Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS19660

Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS19655 and RS_RS19660 are separated by 271 nucleotidesRS_RS19660 and RS_RS19665 are separated by 165 nucleotides RS_RS19655: RS_RS19655 - GGDEF domain-containing protein, at 647,352 to 648,395 _RS19655 RS_RS19660: RS_RS19660 - divalent metal cation transporter, at 648,667 to 649,995 _RS19660 RS_RS19665: RS_RS19665 - molecular chaperone HscC, at 650,161 to 651,942 _RS19665 Position (kb) 648 649 650Strain fitness (log2 ratio) -2 -1 0 1at 647.769 kb on - strand, within RS_RS19655at 647.770 kb on + strand, within RS_RS19655at 647.770 kb on + strand, within RS_RS19655at 647.770 kb on + strand, within RS_RS19655at 647.770 kb on + strand, within RS_RS19655at 647.770 kb on + strand, within RS_RS19655at 647.771 kb on - strand, within RS_RS19655at 647.771 kb on - strand, within RS_RS19655at 647.771 kb on - strand, within RS_RS19655at 647.771 kb on - strand, within RS_RS19655at 647.771 kb on - strand, within RS_RS19655at 647.771 kb on - strand, within RS_RS19655at 647.771 kb on - strand, within RS_RS19655at 647.935 kb on + strand, within RS_RS19655at 647.935 kb on + strand, within RS_RS19655at 647.936 kb on - strand, within RS_RS19655at 647.936 kb on - strand, within RS_RS19655at 647.977 kb on + strand, within RS_RS19655at 647.977 kb on + strand, within RS_RS19655at 647.977 kb on + strand, within RS_RS19655at 648.131 kb on - strand, within RS_RS19655at 648.131 kb on - strand, within RS_RS19655at 648.413 kb on - strandat 648.545 kb on - strandat 648.545 kb on - strandat 648.570 kb on - strandat 648.841 kb on + strand, within RS_RS19660at 648.841 kb on + strand, within RS_RS19660at 648.842 kb on - strand, within RS_RS19660at 648.842 kb on - strand, within RS_RS19660at 648.842 kb on - strand, within RS_RS19660at 648.842 kb on - strand, within RS_RS19660at 649.295 kb on + strand, within RS_RS19660at 649.295 kb on + strand, within RS_RS19660at 649.296 kb on - strand, within RS_RS19660at 649.296 kb on - strand, within RS_RS19660at 649.296 kb on - strand, within RS_RS19660at 649.296 kb on - strand, within RS_RS19660at 649.296 kb on - strand, within RS_RS19660at 649.343 kb on + strand, within RS_RS19660at 649.344 kb on - strand, within RS_RS19660at 649.439 kb on + strand, within RS_RS19660at 649.439 kb on + strand, within RS_RS19660at 649.439 kb on + strand, within RS_RS19660at 649.439 kb on + strand, within RS_RS19660at 649.439 kb on + strand, within RS_RS19660at 649.440 kb on - strand, within RS_RS19660at 649.847 kb on + strand, within RS_RS19660at 649.847 kb on + strand, within RS_RS19660at 649.847 kb on + strand, within RS_RS19660at 649.847 kb on + strand, within RS_RS19660at 649.847 kb on + strand, within RS_RS19660at 649.848 kb on - strand, within RS_RS19660at 650.434 kb on + strand, within RS_RS19665at 650.435 kb on - strand, within RS_RS19665at 650.435 kb on - strand, within RS_RS19665at 650.435 kb on - strand, within RS_RS19665at 650.435 kb on - strand, within RS_RS19665at 650.504 kb on + strand, within RS_RS19665at 650.581 kb on + strand, within RS_RS19665

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
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647,769 - RS_RS19655 0.40 +0.2
647,770 + RS_RS19655 0.40 +0.7
647,770 + RS_RS19655 0.40 -1.4
647,770 + RS_RS19655 0.40 +0.1
647,770 + RS_RS19655 0.40 -0.8
647,770 + RS_RS19655 0.40 -1.9
647,771 - RS_RS19655 0.40 +0.2
647,771 - RS_RS19655 0.40 -0.2
647,771 - RS_RS19655 0.40 -0.2
647,771 - RS_RS19655 0.40 +0.0
647,771 - RS_RS19655 0.40 -0.1
647,771 - RS_RS19655 0.40 -1.0
647,771 - RS_RS19655 0.40 -0.8
647,935 + RS_RS19655 0.56 +0.3
647,935 + RS_RS19655 0.56 +0.3
647,936 - RS_RS19655 0.56 -0.3
647,936 - RS_RS19655 0.56 +0.3
647,977 + RS_RS19655 0.60 -0.2
647,977 + RS_RS19655 0.60 -0.0
647,977 + RS_RS19655 0.60 +0.2
648,131 - RS_RS19655 0.75 -0.2
648,131 - RS_RS19655 0.75 +0.0
648,413 - -0.1
648,545 - -0.1
648,545 - +0.2
648,570 - +0.8
648,841 + RS_RS19660 0.13 +0.5
648,841 + RS_RS19660 0.13 -0.3
648,842 - RS_RS19660 0.13 -0.0
648,842 - RS_RS19660 0.13 -0.4
648,842 - RS_RS19660 0.13 +0.5
648,842 - RS_RS19660 0.13 +0.6
649,295 + RS_RS19660 0.47 -0.5
649,295 + RS_RS19660 0.47 +0.3
649,296 - RS_RS19660 0.47 +0.7
649,296 - RS_RS19660 0.47 +0.2
649,296 - RS_RS19660 0.47 +0.1
649,296 - RS_RS19660 0.47 +0.9
649,296 - RS_RS19660 0.47 +0.5
649,343 + RS_RS19660 0.51 +0.3
649,344 - RS_RS19660 0.51 +0.0
649,439 + RS_RS19660 0.58 -1.5
649,439 + RS_RS19660 0.58 -0.2
649,439 + RS_RS19660 0.58 +0.5
649,439 + RS_RS19660 0.58 +0.4
649,439 + RS_RS19660 0.58 -0.1
649,440 - RS_RS19660 0.58 +0.0
649,847 + RS_RS19660 0.89 -0.6
649,847 + RS_RS19660 0.89 -0.4
649,847 + RS_RS19660 0.89 +0.8
649,847 + RS_RS19660 0.89 +1.5
649,847 + RS_RS19660 0.89 +0.9
649,848 - RS_RS19660 0.89 +0.5
650,434 + RS_RS19665 0.15 -1.4
650,435 - RS_RS19665 0.15 +0.4
650,435 - RS_RS19665 0.15 +0.2
650,435 - RS_RS19665 0.15 +0.2
650,435 - RS_RS19665 0.15 +0.6
650,504 + RS_RS19665 0.19 +0.7
650,581 + RS_RS19665 0.24 -1.3

Or see this region's nucleotide sequence