Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS02785 and RS_RS02790 are separated by 193 nucleotides RS_RS02790 and RS_RS02795 are separated by 266 nucleotides RS_RS02795 and RS_RS02800 are separated by 81 nucleotides
RS_RS02785: RS_RS02785 - hypothetical protein, at 601,059 to 601,757
_RS02785
RS_RS02790: RS_RS02790 - pilin, at 601,951 to 602,472
_RS02790
RS_RS02795: RS_RS02795 - pilin, at 602,739 to 603,245
_RS02795
RS_RS02800: RS_RS02800 - polymerase, at 603,327 to 605,060
_RS02800
Position (kb) 602
603
604 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 601.781 kb on + strand at 602.040 kb on - strand, within RS_RS02790 at 602.075 kb on - strand, within RS_RS02790 at 602.075 kb on - strand, within RS_RS02790 at 602.163 kb on + strand, within RS_RS02790 at 602.163 kb on + strand, within RS_RS02790 at 602.163 kb on + strand, within RS_RS02790 at 602.164 kb on - strand, within RS_RS02790 at 602.164 kb on - strand, within RS_RS02790 at 602.164 kb on - strand, within RS_RS02790 at 602.164 kb on - strand, within RS_RS02790 at 602.254 kb on + strand, within RS_RS02790 at 602.254 kb on + strand, within RS_RS02790 at 602.255 kb on - strand, within RS_RS02790 at 602.286 kb on + strand, within RS_RS02790 at 602.287 kb on - strand, within RS_RS02790 at 602.294 kb on + strand, within RS_RS02790 at 602.294 kb on + strand, within RS_RS02790 at 602.294 kb on + strand, within RS_RS02790 at 602.295 kb on - strand, within RS_RS02790 at 602.325 kb on - strand, within RS_RS02790 at 602.325 kb on - strand, within RS_RS02790 at 602.449 kb on + strand at 602.449 kb on + strand at 602.694 kb on + strand at 602.694 kb on + strand at 602.695 kb on - strand at 602.695 kb on - strand at 602.715 kb on - strand at 602.822 kb on + strand, within RS_RS02795 at 603.021 kb on - strand, within RS_RS02795 at 603.049 kb on - strand, within RS_RS02795 at 603.049 kb on - strand, within RS_RS02795 at 603.049 kb on - strand, within RS_RS02795 at 603.153 kb on + strand, within RS_RS02795 at 603.164 kb on + strand, within RS_RS02795 at 603.165 kb on - strand, within RS_RS02795 at 603.179 kb on + strand, within RS_RS02795 at 603.223 kb on - strand at 603.223 kb on - strand at 603.250 kb on + strand at 603.251 kb on - strand at 603.251 kb on - strand at 603.256 kb on - strand at 603.260 kb on + strand at 603.260 kb on + strand at 603.260 kb on + strand at 603.261 kb on - strand at 603.273 kb on - strand at 603.308 kb on - strand at 603.416 kb on + strand at 603.417 kb on - strand at 603.417 kb on - strand at 603.417 kb on - strand at 603.438 kb on + strand at 603.439 kb on - strand at 603.506 kb on + strand, within RS_RS02800 at 603.507 kb on - strand, within RS_RS02800 at 603.605 kb on + strand, within RS_RS02800 at 603.646 kb on + strand, within RS_RS02800 at 603.647 kb on - strand, within RS_RS02800 at 603.859 kb on - strand, within RS_RS02800 at 604.098 kb on + strand, within RS_RS02800 at 604.099 kb on - strand, within RS_RS02800 at 604.099 kb on - strand, within RS_RS02800 at 604.125 kb on + strand, within RS_RS02800 at 604.207 kb on + strand, within RS_RS02800
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 601,781 + +0.4 602,040 - RS_RS02790 0.17 -0.1 602,075 - RS_RS02790 0.24 -0.5 602,075 - RS_RS02790 0.24 +0.2 602,163 + RS_RS02790 0.41 +0.2 602,163 + RS_RS02790 0.41 +0.4 602,163 + RS_RS02790 0.41 +0.0 602,164 - RS_RS02790 0.41 -0.5 602,164 - RS_RS02790 0.41 -0.2 602,164 - RS_RS02790 0.41 -1.0 602,164 - RS_RS02790 0.41 -1.2 602,254 + RS_RS02790 0.58 +0.2 602,254 + RS_RS02790 0.58 -0.7 602,255 - RS_RS02790 0.58 +0.3 602,286 + RS_RS02790 0.64 -0.6 602,287 - RS_RS02790 0.64 -0.5 602,294 + RS_RS02790 0.66 -0.1 602,294 + RS_RS02790 0.66 -3.3 602,294 + RS_RS02790 0.66 -0.2 602,295 - RS_RS02790 0.66 +0.1 602,325 - RS_RS02790 0.72 -0.4 602,325 - RS_RS02790 0.72 +0.3 602,449 + +0.6 602,449 + -0.0 602,694 + +1.3 602,694 + +0.0 602,695 - -0.1 602,695 - +0.1 602,715 - -0.7 602,822 + RS_RS02795 0.16 -0.2 603,021 - RS_RS02795 0.56 +0.3 603,049 - RS_RS02795 0.61 +0.5 603,049 - RS_RS02795 0.61 -0.2 603,049 - RS_RS02795 0.61 +0.8 603,153 + RS_RS02795 0.82 +0.3 603,164 + RS_RS02795 0.84 +0.4 603,165 - RS_RS02795 0.84 +0.4 603,179 + RS_RS02795 0.87 +0.5 603,223 - -0.3 603,223 - -0.3 603,250 + +0.4 603,251 - +0.2 603,251 - -0.0 603,256 - +1.0 603,260 + +0.8 603,260 + -0.4 603,260 + -0.8 603,261 - +0.3 603,273 - +0.5 603,308 - -0.2 603,416 + -0.7 603,417 - -0.7 603,417 - -0.2 603,417 - -2.6 603,438 + +0.6 603,439 - -0.3 603,506 + RS_RS02800 0.10 +0.7 603,507 - RS_RS02800 0.10 +1.0 603,605 + RS_RS02800 0.16 +0.3 603,646 + RS_RS02800 0.18 +0.7 603,647 - RS_RS02800 0.18 -0.0 603,859 - RS_RS02800 0.31 +0.2 604,098 + RS_RS02800 0.44 -0.2 604,099 - RS_RS02800 0.45 +0.5 604,099 - RS_RS02800 0.45 +0.5 604,125 + RS_RS02800 0.46 +0.2 604,207 + RS_RS02800 0.51 -1.0
Or see this region's nucleotide sequence