Experiment: Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS18820 and RALBFv3_RS18825 are separated by 303 nucleotides RALBFv3_RS18825 and RALBFv3_RS18830 are separated by 54 nucleotides
RALBFv3_RS18820: RALBFv3_RS18820 - DNA-binding protein, at 767,578 to 767,829
_RS18820
RALBFv3_RS18825: RALBFv3_RS18825 - LysR family transcriptional regulator, at 768,133 to 768,993
_RS18825
RALBFv3_RS18830: RALBFv3_RS18830 - DUF4865 domain-containing protein, at 769,048 to 769,884
_RS18830
Position (kb) 768
769 Strain fitness (log2 ratio) -2
-1
0
1 at 767.303 kb on + strand at 767.303 kb on + strand at 767.684 kb on + strand, within RALBFv3_RS18820 at 767.685 kb on - strand, within RALBFv3_RS18820 at 767.756 kb on + strand, within RALBFv3_RS18820 at 767.757 kb on - strand, within RALBFv3_RS18820 at 767.834 kb on + strand at 767.835 kb on - strand at 767.844 kb on - strand at 767.935 kb on + strand at 767.936 kb on - strand at 767.936 kb on - strand at 768.955 kb on + strand at 768.967 kb on + strand at 768.967 kb on + strand at 769.483 kb on + strand, within RALBFv3_RS18830 at 769.483 kb on + strand, within RALBFv3_RS18830 at 769.496 kb on - strand, within RALBFv3_RS18830 at 769.627 kb on - strand, within RALBFv3_RS18830 at 769.839 kb on + strand at 769.840 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 767,303 + +1.1 767,303 + -1.0 767,684 + RALBFv3_RS18820 0.42 +0.5 767,685 - RALBFv3_RS18820 0.42 +1.6 767,756 + RALBFv3_RS18820 0.71 -0.1 767,757 - RALBFv3_RS18820 0.71 -0.8 767,834 + +0.6 767,835 - +1.4 767,844 - -0.5 767,935 + +0.3 767,936 - +1.0 767,936 - +1.1 768,955 + +0.1 768,967 + -1.9 768,967 + +0.4 769,483 + RALBFv3_RS18830 0.52 +0.7 769,483 + RALBFv3_RS18830 0.52 -1.1 769,496 - RALBFv3_RS18830 0.54 -0.3 769,627 - RALBFv3_RS18830 0.69 -1.1 769,839 + -0.7 769,840 - -0.9
Or see this region's nucleotide sequence