Experiment: Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS18440 and RALBFv3_RS18445 are separated by 136 nucleotides RALBFv3_RS18445 and RALBFv3_RS18450 are separated by 107 nucleotides RALBFv3_RS18450 and RALBFv3_RS24370 are separated by 139 nucleotides RALBFv3_RS24370 and RALBFv3_RS18455 are separated by 22 nucleotides
RALBFv3_RS18440: RALBFv3_RS18440 - sensor histidine kinase, at 663,000 to 664,448
_RS18440
RALBFv3_RS18445: RALBFv3_RS18445 - membrane protein, at 664,585 to 666,126
_RS18445
RALBFv3_RS18450: RALBFv3_RS18450 - endonuclease, at 666,234 to 666,542
_RS18450
RALBFv3_RS24370: RALBFv3_RS24370 - hypothetical protein, at 666,682 to 666,909
_RS24370
RALBFv3_RS18455: RALBFv3_RS18455 - phosphodiesterase, at 666,932 to 669,019
_RS18455
Position (kb) 664
665
666
667 Strain fitness (log2 ratio) -1
0
1
2
3 at 663.959 kb on + strand, within RALBFv3_RS18440 at 663.960 kb on - strand, within RALBFv3_RS18440 at 663.960 kb on - strand, within RALBFv3_RS18440 at 664.074 kb on + strand, within RALBFv3_RS18440 at 664.121 kb on + strand, within RALBFv3_RS18440 at 664.236 kb on + strand, within RALBFv3_RS18440 at 664.237 kb on - strand, within RALBFv3_RS18440 at 664.237 kb on - strand, within RALBFv3_RS18440 at 664.505 kb on + strand at 664.552 kb on + strand at 664.683 kb on + strand at 664.684 kb on - strand at 664.684 kb on - strand at 664.756 kb on + strand, within RALBFv3_RS18445 at 664.838 kb on - strand, within RALBFv3_RS18445 at 665.008 kb on + strand, within RALBFv3_RS18445 at 665.008 kb on + strand, within RALBFv3_RS18445 at 665.009 kb on - strand, within RALBFv3_RS18445 at 665.009 kb on - strand, within RALBFv3_RS18445 at 665.009 kb on - strand, within RALBFv3_RS18445 at 665.056 kb on + strand, within RALBFv3_RS18445 at 665.057 kb on - strand, within RALBFv3_RS18445 at 665.057 kb on - strand, within RALBFv3_RS18445 at 665.068 kb on + strand, within RALBFv3_RS18445 at 665.069 kb on - strand, within RALBFv3_RS18445 at 665.069 kb on - strand, within RALBFv3_RS18445 at 665.104 kb on + strand, within RALBFv3_RS18445 at 665.104 kb on + strand, within RALBFv3_RS18445 at 665.105 kb on - strand, within RALBFv3_RS18445 at 665.105 kb on - strand, within RALBFv3_RS18445 at 665.106 kb on + strand, within RALBFv3_RS18445 at 665.107 kb on - strand, within RALBFv3_RS18445 at 665.107 kb on - strand, within RALBFv3_RS18445 at 666.202 kb on - strand at 666.533 kb on - strand at 666.533 kb on - strand at 667.000 kb on - strand at 667.000 kb on - strand at 667.125 kb on + strand at 667.126 kb on - strand at 667.126 kb on - strand at 667.126 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 663,959 + RALBFv3_RS18440 0.66 +0.9 663,960 - RALBFv3_RS18440 0.66 +1.2 663,960 - RALBFv3_RS18440 0.66 -0.5 664,074 + RALBFv3_RS18440 0.74 -0.6 664,121 + RALBFv3_RS18440 0.77 -0.7 664,236 + RALBFv3_RS18440 0.85 -0.1 664,237 - RALBFv3_RS18440 0.85 +0.2 664,237 - RALBFv3_RS18440 0.85 -1.1 664,505 + -0.5 664,552 + +2.1 664,683 + -0.2 664,684 - -1.0 664,684 - -0.9 664,756 + RALBFv3_RS18445 0.11 -0.1 664,838 - RALBFv3_RS18445 0.16 -1.2 665,008 + RALBFv3_RS18445 0.27 +0.5 665,008 + RALBFv3_RS18445 0.27 +0.2 665,009 - RALBFv3_RS18445 0.27 -1.2 665,009 - RALBFv3_RS18445 0.27 -0.6 665,009 - RALBFv3_RS18445 0.27 +0.3 665,056 + RALBFv3_RS18445 0.31 +0.5 665,057 - RALBFv3_RS18445 0.31 +1.2 665,057 - RALBFv3_RS18445 0.31 +2.1 665,068 + RALBFv3_RS18445 0.31 -1.7 665,069 - RALBFv3_RS18445 0.31 -0.2 665,069 - RALBFv3_RS18445 0.31 -0.8 665,104 + RALBFv3_RS18445 0.34 +0.4 665,104 + RALBFv3_RS18445 0.34 -1.5 665,105 - RALBFv3_RS18445 0.34 +1.7 665,105 - RALBFv3_RS18445 0.34 -0.6 665,106 + RALBFv3_RS18445 0.34 -0.0 665,107 - RALBFv3_RS18445 0.34 -1.1 665,107 - RALBFv3_RS18445 0.34 +3.1 666,202 - -0.3 666,533 - +0.8 666,533 - +0.5 667,000 - +0.5 667,000 - +1.3 667,125 + +0.5 667,126 - +1.4 667,126 - +0.2 667,126 - +0.2
Or see this region's nucleotide sequence