Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS17915

Experiment: Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRALBFv3_RS17900 and RALBFv3_RS17905 are separated by 25 nucleotidesRALBFv3_RS17905 and RALBFv3_RS17910 overlap by 1 nucleotidesRALBFv3_RS17910 and RALBFv3_RS17915 are separated by 0 nucleotidesRALBFv3_RS17915 and RALBFv3_RS17920 are separated by 153 nucleotides RALBFv3_RS17900: RALBFv3_RS17900 - DoxX family protein, at 522,616 to 523,038 _RS17900 RALBFv3_RS17905: RALBFv3_RS17905 - GTP cyclohydrolase II RibA, at 523,064 to 523,720 _RS17905 RALBFv3_RS17910: RALBFv3_RS17910 - hypothetical protein, at 523,720 to 523,959 _RS17910 RALBFv3_RS17915: RALBFv3_RS17915 - type III effector protein, at 523,960 to 526,056 _RS17915 RALBFv3_RS17920: RALBFv3_RS17920 - LysR family transcriptional regulator, at 526,210 to 527,142 _RS17920 Position (kb) 523 524 525 526 527Strain fitness (log2 ratio) -1 0 1 2at 522.960 kb on - strand, within RALBFv3_RS17900at 522.960 kb on - strand, within RALBFv3_RS17900at 522.969 kb on + strand, within RALBFv3_RS17900at 522.969 kb on + strand, within RALBFv3_RS17900at 522.970 kb on - strand, within RALBFv3_RS17900at 523.175 kb on + strand, within RALBFv3_RS17905at 523.176 kb on - strand, within RALBFv3_RS17905at 523.176 kb on - strand, within RALBFv3_RS17905at 523.176 kb on - strand, within RALBFv3_RS17905at 523.176 kb on - strand, within RALBFv3_RS17905at 523.177 kb on - strandat 523.361 kb on + strand, within RALBFv3_RS17905at 523.362 kb on - strand, within RALBFv3_RS17905at 523.370 kb on + strand, within RALBFv3_RS17905at 523.370 kb on + strand, within RALBFv3_RS17905at 523.370 kb on + strand, within RALBFv3_RS17905at 523.370 kb on + strand, within RALBFv3_RS17905at 523.403 kb on + strand, within RALBFv3_RS17905at 523.404 kb on - strand, within RALBFv3_RS17905at 523.496 kb on + strand, within RALBFv3_RS17905at 523.497 kb on - strand, within RALBFv3_RS17905at 523.801 kb on + strand, within RALBFv3_RS17910at 523.801 kb on + strand, within RALBFv3_RS17910at 523.801 kb on + strand, within RALBFv3_RS17910at 523.802 kb on - strand, within RALBFv3_RS17910at 523.865 kb on + strand, within RALBFv3_RS17910at 523.865 kb on + strand, within RALBFv3_RS17910at 523.865 kb on + strand, within RALBFv3_RS17910at 523.865 kb on + strand, within RALBFv3_RS17910at 523.866 kb on - strand, within RALBFv3_RS17910at 523.866 kb on - strand, within RALBFv3_RS17910at 523.866 kb on - strand, within RALBFv3_RS17910at 523.903 kb on + strand, within RALBFv3_RS17910at 523.903 kb on + strand, within RALBFv3_RS17910at 523.904 kb on - strand, within RALBFv3_RS17910at 523.904 kb on - strand, within RALBFv3_RS17910at 523.904 kb on - strand, within RALBFv3_RS17910at 523.904 kb on - strand, within RALBFv3_RS17910at 524.138 kb on + strandat 524.138 kb on + strandat 524.139 kb on - strandat 524.543 kb on + strand, within RALBFv3_RS17915at 524.544 kb on - strand, within RALBFv3_RS17915at 524.594 kb on + strand, within RALBFv3_RS17915at 524.594 kb on + strand, within RALBFv3_RS17915at 524.594 kb on + strand, within RALBFv3_RS17915at 524.595 kb on - strand, within RALBFv3_RS17915at 524.595 kb on - strand, within RALBFv3_RS17915at 524.735 kb on + strand, within RALBFv3_RS17915at 525.098 kb on - strand, within RALBFv3_RS17915at 525.134 kb on - strand, within RALBFv3_RS17915at 525.134 kb on - strand, within RALBFv3_RS17915at 525.178 kb on - strand, within RALBFv3_RS17915at 525.234 kb on + strand, within RALBFv3_RS17915at 525.234 kb on + strand, within RALBFv3_RS17915at 525.235 kb on - strand, within RALBFv3_RS17915at 525.236 kb on + strand, within RALBFv3_RS17915at 525.236 kb on + strand, within RALBFv3_RS17915at 525.237 kb on - strand, within RALBFv3_RS17915at 525.253 kb on + strand, within RALBFv3_RS17915at 525.254 kb on - strand, within RALBFv3_RS17915at 525.267 kb on + strand, within RALBFv3_RS17915at 525.268 kb on - strand, within RALBFv3_RS17915at 525.577 kb on - strand, within RALBFv3_RS17915at 525.851 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
remove
522,960 - RALBFv3_RS17900 0.81 -1.6
522,960 - RALBFv3_RS17900 0.81 -1.0
522,969 + RALBFv3_RS17900 0.83 +0.5
522,969 + RALBFv3_RS17900 0.83 +0.3
522,970 - RALBFv3_RS17900 0.84 +1.1
523,175 + RALBFv3_RS17905 0.17 +0.1
523,176 - RALBFv3_RS17905 0.17 +1.9
523,176 - RALBFv3_RS17905 0.17 -0.7
523,176 - RALBFv3_RS17905 0.17 -0.9
523,176 - RALBFv3_RS17905 0.17 +0.7
523,177 - +0.1
523,361 + RALBFv3_RS17905 0.45 +0.1
523,362 - RALBFv3_RS17905 0.45 +1.1
523,370 + RALBFv3_RS17905 0.47 +0.3
523,370 + RALBFv3_RS17905 0.47 -0.8
523,370 + RALBFv3_RS17905 0.47 -0.7
523,370 + RALBFv3_RS17905 0.47 +0.4
523,403 + RALBFv3_RS17905 0.52 +1.0
523,404 - RALBFv3_RS17905 0.52 +0.8
523,496 + RALBFv3_RS17905 0.66 -1.4
523,497 - RALBFv3_RS17905 0.66 +1.6
523,801 + RALBFv3_RS17910 0.34 -0.1
523,801 + RALBFv3_RS17910 0.34 +0.1
523,801 + RALBFv3_RS17910 0.34 +1.5
523,802 - RALBFv3_RS17910 0.34 -1.1
523,865 + RALBFv3_RS17910 0.60 +1.7
523,865 + RALBFv3_RS17910 0.60 +2.1
523,865 + RALBFv3_RS17910 0.60 +0.1
523,865 + RALBFv3_RS17910 0.60 +0.1
523,866 - RALBFv3_RS17910 0.61 -0.1
523,866 - RALBFv3_RS17910 0.61 -1.1
523,866 - RALBFv3_RS17910 0.61 -0.7
523,903 + RALBFv3_RS17910 0.76 +0.6
523,903 + RALBFv3_RS17910 0.76 +0.4
523,904 - RALBFv3_RS17910 0.77 +0.1
523,904 - RALBFv3_RS17910 0.77 -0.3
523,904 - RALBFv3_RS17910 0.77 -0.1
523,904 - RALBFv3_RS17910 0.77 -0.5
524,138 + +0.1
524,138 + +0.3
524,139 - +0.1
524,543 + RALBFv3_RS17915 0.28 +0.1
524,544 - RALBFv3_RS17915 0.28 -0.3
524,594 + RALBFv3_RS17915 0.30 +0.0
524,594 + RALBFv3_RS17915 0.30 -0.2
524,594 + RALBFv3_RS17915 0.30 +0.5
524,595 - RALBFv3_RS17915 0.30 +0.1
524,595 - RALBFv3_RS17915 0.30 +1.2
524,735 + RALBFv3_RS17915 0.37 +0.7
525,098 - RALBFv3_RS17915 0.54 +0.5
525,134 - RALBFv3_RS17915 0.56 -0.9
525,134 - RALBFv3_RS17915 0.56 +1.0
525,178 - RALBFv3_RS17915 0.58 +1.0
525,234 + RALBFv3_RS17915 0.61 +0.7
525,234 + RALBFv3_RS17915 0.61 +1.6
525,235 - RALBFv3_RS17915 0.61 -0.1
525,236 + RALBFv3_RS17915 0.61 -0.1
525,236 + RALBFv3_RS17915 0.61 -0.3
525,237 - RALBFv3_RS17915 0.61 -0.2
525,253 + RALBFv3_RS17915 0.62 -0.8
525,254 - RALBFv3_RS17915 0.62 -0.5
525,267 + RALBFv3_RS17915 0.62 -0.9
525,268 - RALBFv3_RS17915 0.62 +0.1
525,577 - RALBFv3_RS17915 0.77 +1.0
525,851 - +0.5

Or see this region's nucleotide sequence