Experiment: Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS16915 and RALBFv3_RS16920 are separated by 64 nucleotides RALBFv3_RS16920 and RALBFv3_RS16925 are separated by 156 nucleotides
RALBFv3_RS16915: RALBFv3_RS16915 - LysR family transcriptional regulator, at 277,399 to 278,277
_RS16915
RALBFv3_RS16920: RALBFv3_RS16920 - EamA/RhaT family transporter, at 278,342 to 279,283
_RS16920
RALBFv3_RS16925: RALBFv3_RS16925 - hypothetical protein, at 279,440 to 280,555
_RS16925
Position (kb) 278
279
280 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 277.365 kb on + strand at 277.365 kb on + strand at 277.365 kb on + strand at 277.366 kb on - strand at 277.366 kb on - strand at 277.370 kb on + strand at 277.371 kb on + strand at 277.371 kb on + strand at 277.371 kb on + strand at 277.371 kb on + strand at 277.371 kb on + strand at 277.371 kb on + strand at 277.371 kb on + strand at 277.371 kb on + strand at 277.372 kb on - strand at 277.372 kb on - strand at 277.400 kb on + strand at 277.400 kb on + strand at 277.400 kb on + strand at 277.401 kb on - strand at 277.401 kb on - strand at 277.451 kb on + strand at 277.451 kb on + strand at 277.451 kb on + strand at 277.451 kb on + strand at 277.451 kb on + strand at 277.451 kb on + strand at 277.452 kb on - strand at 277.452 kb on - strand at 277.452 kb on - strand at 277.452 kb on - strand at 277.452 kb on - strand at 277.452 kb on - strand at 277.452 kb on - strand at 277.452 kb on - strand at 277.452 kb on - strand at 277.452 kb on - strand at 277.452 kb on - strand at 277.452 kb on - strand at 277.452 kb on - strand at 277.452 kb on - strand at 277.585 kb on + strand, within RALBFv3_RS16915 at 277.646 kb on + strand, within RALBFv3_RS16915 at 277.920 kb on - strand, within RALBFv3_RS16915 at 277.955 kb on + strand, within RALBFv3_RS16915 at 277.955 kb on + strand, within RALBFv3_RS16915 at 277.956 kb on - strand, within RALBFv3_RS16915 at 277.956 kb on - strand, within RALBFv3_RS16915 at 277.956 kb on - strand, within RALBFv3_RS16915 at 277.967 kb on + strand, within RALBFv3_RS16915 at 277.967 kb on + strand, within RALBFv3_RS16915 at 277.968 kb on - strand, within RALBFv3_RS16915 at 278.063 kb on + strand, within RALBFv3_RS16915 at 278.064 kb on - strand, within RALBFv3_RS16915 at 278.064 kb on - strand, within RALBFv3_RS16915 at 278.186 kb on + strand, within RALBFv3_RS16915 at 278.186 kb on + strand, within RALBFv3_RS16915 at 278.186 kb on + strand, within RALBFv3_RS16915 at 278.187 kb on - strand, within RALBFv3_RS16915 at 278.287 kb on - strand at 278.315 kb on + strand at 278.483 kb on - strand, within RALBFv3_RS16920 at 278.483 kb on - strand, within RALBFv3_RS16920 at 278.829 kb on + strand, within RALBFv3_RS16920 at 278.874 kb on - strand, within RALBFv3_RS16920 at 278.874 kb on - strand, within RALBFv3_RS16920 at 278.956 kb on + strand, within RALBFv3_RS16920 at 278.957 kb on - strand, within RALBFv3_RS16920 at 279.079 kb on + strand, within RALBFv3_RS16920 at 279.098 kb on + strand, within RALBFv3_RS16920 at 279.099 kb on - strand, within RALBFv3_RS16920 at 279.099 kb on - strand, within RALBFv3_RS16920 at 279.110 kb on + strand, within RALBFv3_RS16920 at 279.111 kb on - strand, within RALBFv3_RS16920 at 279.111 kb on - strand, within RALBFv3_RS16920 at 279.111 kb on - strand, within RALBFv3_RS16920 at 279.164 kb on + strand, within RALBFv3_RS16920 at 279.164 kb on + strand, within RALBFv3_RS16920 at 279.165 kb on - strand, within RALBFv3_RS16920 at 279.200 kb on + strand at 279.200 kb on + strand at 279.201 kb on - strand at 279.201 kb on - strand at 279.201 kb on - strand at 279.201 kb on - strand at 279.284 kb on + strand at 279.284 kb on + strand at 279.284 kb on + strand at 279.284 kb on + strand at 279.285 kb on - strand at 279.285 kb on - strand at 279.285 kb on - strand at 279.384 kb on + strand at 279.402 kb on + strand at 279.403 kb on - strand at 279.403 kb on - strand at 279.403 kb on - strand at 279.403 kb on - strand at 279.403 kb on - strand at 279.403 kb on - strand at 279.403 kb on - strand at 279.563 kb on - strand, within RALBFv3_RS16925 at 279.620 kb on + strand, within RALBFv3_RS16925 at 279.621 kb on - strand, within RALBFv3_RS16925 at 279.621 kb on - strand, within RALBFv3_RS16925 at 279.777 kb on - strand, within RALBFv3_RS16925 at 279.777 kb on - strand, within RALBFv3_RS16925 at 279.779 kb on + strand, within RALBFv3_RS16925 at 279.779 kb on + strand, within RALBFv3_RS16925 at 279.779 kb on + strand, within RALBFv3_RS16925 at 279.779 kb on + strand, within RALBFv3_RS16925 at 279.779 kb on + strand, within RALBFv3_RS16925 at 279.780 kb on - strand, within RALBFv3_RS16925 at 279.780 kb on - strand, within RALBFv3_RS16925 at 279.780 kb on - strand, within RALBFv3_RS16925 at 279.780 kb on - strand, within RALBFv3_RS16925 at 279.780 kb on - strand, within RALBFv3_RS16925 at 279.780 kb on - strand, within RALBFv3_RS16925 at 279.857 kb on + strand, within RALBFv3_RS16925 at 279.857 kb on + strand, within RALBFv3_RS16925 at 279.888 kb on - strand, within RALBFv3_RS16925 at 279.909 kb on + strand, within RALBFv3_RS16925 at 279.909 kb on + strand, within RALBFv3_RS16925 at 279.909 kb on + strand, within RALBFv3_RS16925 at 279.910 kb on - strand, within RALBFv3_RS16925 at 279.910 kb on - strand, within RALBFv3_RS16925 at 280.112 kb on + strand, within RALBFv3_RS16925 at 280.113 kb on - strand, within RALBFv3_RS16925 at 280.222 kb on + strand, within RALBFv3_RS16925 at 280.222 kb on + strand, within RALBFv3_RS16925 at 280.222 kb on + strand, within RALBFv3_RS16925 at 280.223 kb on - strand, within RALBFv3_RS16925 at 280.223 kb on - strand, within RALBFv3_RS16925 at 280.224 kb on + strand, within RALBFv3_RS16925 at 280.226 kb on + strand, within RALBFv3_RS16925 at 280.226 kb on + strand, within RALBFv3_RS16925 at 280.226 kb on + strand, within RALBFv3_RS16925
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 277,365 + -0.0 277,365 + -0.3 277,365 + -0.8 277,366 - +0.3 277,366 - -0.2 277,370 + -0.6 277,371 + -0.8 277,371 + -0.6 277,371 + -1.1 277,371 + -0.7 277,371 + +2.0 277,371 + +0.3 277,371 + +1.8 277,371 + -1.9 277,372 - -0.1 277,372 - +0.6 277,400 + -0.4 277,400 + -0.2 277,400 + -0.1 277,401 - +0.0 277,401 - +0.6 277,451 + -0.1 277,451 + +0.3 277,451 + +1.5 277,451 + +0.8 277,451 + +0.0 277,451 + +1.6 277,452 - -0.3 277,452 - -0.2 277,452 - -0.3 277,452 - -2.1 277,452 - -0.6 277,452 - +0.5 277,452 - -0.2 277,452 - -1.1 277,452 - +0.2 277,452 - -0.6 277,452 - +0.1 277,452 - -2.7 277,452 - -1.4 277,452 - -0.1 277,585 + RALBFv3_RS16915 0.21 -1.1 277,646 + RALBFv3_RS16915 0.28 -0.8 277,920 - RALBFv3_RS16915 0.59 -0.2 277,955 + RALBFv3_RS16915 0.63 -0.4 277,955 + RALBFv3_RS16915 0.63 -2.2 277,956 - RALBFv3_RS16915 0.63 +0.1 277,956 - RALBFv3_RS16915 0.63 +0.8 277,956 - RALBFv3_RS16915 0.63 +0.7 277,967 + RALBFv3_RS16915 0.65 +0.3 277,967 + RALBFv3_RS16915 0.65 -0.1 277,968 - RALBFv3_RS16915 0.65 +0.8 278,063 + RALBFv3_RS16915 0.76 -1.3 278,064 - RALBFv3_RS16915 0.76 +0.5 278,064 - RALBFv3_RS16915 0.76 -1.5 278,186 + RALBFv3_RS16915 0.90 -1.5 278,186 + RALBFv3_RS16915 0.90 -0.6 278,186 + RALBFv3_RS16915 0.90 +0.4 278,187 - RALBFv3_RS16915 0.90 -1.7 278,287 - +0.6 278,315 + -1.0 278,483 - RALBFv3_RS16920 0.15 +2.2 278,483 - RALBFv3_RS16920 0.15 -0.2 278,829 + RALBFv3_RS16920 0.52 +0.4 278,874 - RALBFv3_RS16920 0.56 -0.1 278,874 - RALBFv3_RS16920 0.56 -0.6 278,956 + RALBFv3_RS16920 0.65 +1.2 278,957 - RALBFv3_RS16920 0.65 -0.5 279,079 + RALBFv3_RS16920 0.78 -0.8 279,098 + RALBFv3_RS16920 0.80 +0.6 279,099 - RALBFv3_RS16920 0.80 +0.8 279,099 - RALBFv3_RS16920 0.80 -0.2 279,110 + RALBFv3_RS16920 0.82 -0.5 279,111 - RALBFv3_RS16920 0.82 -0.9 279,111 - RALBFv3_RS16920 0.82 +1.9 279,111 - RALBFv3_RS16920 0.82 +2.2 279,164 + RALBFv3_RS16920 0.87 -0.6 279,164 + RALBFv3_RS16920 0.87 -1.5 279,165 - RALBFv3_RS16920 0.87 -0.6 279,200 + +1.9 279,200 + +2.7 279,201 - -0.1 279,201 - +0.1 279,201 - +0.4 279,201 - -1.0 279,284 + +1.2 279,284 + -2.0 279,284 + +1.8 279,284 + -2.1 279,285 - -0.5 279,285 - +2.1 279,285 - -0.4 279,384 + -0.7 279,402 + -1.0 279,403 - +0.2 279,403 - -0.2 279,403 - +0.4 279,403 - -0.7 279,403 - -0.7 279,403 - -2.2 279,403 - +0.4 279,563 - RALBFv3_RS16925 0.11 -0.5 279,620 + RALBFv3_RS16925 0.16 +0.6 279,621 - RALBFv3_RS16925 0.16 -0.6 279,621 - RALBFv3_RS16925 0.16 -1.6 279,777 - RALBFv3_RS16925 0.30 -0.3 279,777 - RALBFv3_RS16925 0.30 -2.0 279,779 + RALBFv3_RS16925 0.30 -0.5 279,779 + RALBFv3_RS16925 0.30 -0.4 279,779 + RALBFv3_RS16925 0.30 +0.2 279,779 + RALBFv3_RS16925 0.30 -0.7 279,779 + RALBFv3_RS16925 0.30 -1.1 279,780 - RALBFv3_RS16925 0.30 +0.3 279,780 - RALBFv3_RS16925 0.30 -0.2 279,780 - RALBFv3_RS16925 0.30 +0.1 279,780 - RALBFv3_RS16925 0.30 -0.2 279,780 - RALBFv3_RS16925 0.30 +0.3 279,780 - RALBFv3_RS16925 0.30 +0.2 279,857 + RALBFv3_RS16925 0.37 -0.9 279,857 + RALBFv3_RS16925 0.37 -0.3 279,888 - RALBFv3_RS16925 0.40 -0.5 279,909 + RALBFv3_RS16925 0.42 -0.7 279,909 + RALBFv3_RS16925 0.42 +0.4 279,909 + RALBFv3_RS16925 0.42 -1.2 279,910 - RALBFv3_RS16925 0.42 +2.2 279,910 - RALBFv3_RS16925 0.42 +0.3 280,112 + RALBFv3_RS16925 0.60 +0.2 280,113 - RALBFv3_RS16925 0.60 -0.9 280,222 + RALBFv3_RS16925 0.70 +1.2 280,222 + RALBFv3_RS16925 0.70 -0.1 280,222 + RALBFv3_RS16925 0.70 -0.4 280,223 - RALBFv3_RS16925 0.70 +0.1 280,223 - RALBFv3_RS16925 0.70 +1.2 280,224 + RALBFv3_RS16925 0.70 -1.5 280,226 + RALBFv3_RS16925 0.70 +0.6 280,226 + RALBFv3_RS16925 0.70 +0.5 280,226 + RALBFv3_RS16925 0.70 +3.2
Or see this region's nucleotide sequence