Experiment: Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS15215 and RALBFv3_RS15220 are separated by 190 nucleotides RALBFv3_RS15220 and RALBFv3_RS15225 are separated by 15 nucleotides RALBFv3_RS15225 and RALBFv3_RS15230 are separated by 1 nucleotides RALBFv3_RS15230 and RALBFv3_RS15235 are separated by 8 nucleotides
RALBFv3_RS15215: RALBFv3_RS15215 - NADPH:quinone oxidoreductase family protein, at 3,313,637 to 3,314,611
_RS15215
RALBFv3_RS15220: RALBFv3_RS15220 - 5'/3'-nucleotidase SurE, at 3,314,802 to 3,315,557
_RS15220
RALBFv3_RS15225: RALBFv3_RS15225 - protein-L-isoaspartate(D-aspartate) O-methyltransferase, at 3,315,573 to 3,316,499
_RS15225
RALBFv3_RS15230: RALBFv3_RS15230 - hypothetical protein, at 3,316,501 to 3,317,328
_RS15230
RALBFv3_RS15235: RALBFv3_RS15235 - RNA polymerase sigma factor RpoS, at 3,317,337 to 3,318,467
_RS15235
Position (kb) 3315
3316
3317 Strain fitness (log2 ratio) -1
0
1 at 3314.668 kb on - strand at 3314.668 kb on - strand at 3315.029 kb on + strand, within RALBFv3_RS15220 at 3315.117 kb on + strand, within RALBFv3_RS15220 at 3315.293 kb on + strand, within RALBFv3_RS15220 at 3316.158 kb on + strand, within RALBFv3_RS15225 at 3316.158 kb on + strand, within RALBFv3_RS15225 at 3316.159 kb on - strand, within RALBFv3_RS15225 at 3316.159 kb on - strand, within RALBFv3_RS15225 at 3316.498 kb on - strand at 3316.717 kb on + strand, within RALBFv3_RS15230 at 3316.860 kb on + strand, within RALBFv3_RS15230 at 3317.148 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 3,314,668 - +1.4 3,314,668 - -0.2 3,315,029 + RALBFv3_RS15220 0.30 -0.6 3,315,117 + RALBFv3_RS15220 0.42 -0.5 3,315,293 + RALBFv3_RS15220 0.65 -0.6 3,316,158 + RALBFv3_RS15225 0.63 +0.6 3,316,158 + RALBFv3_RS15225 0.63 -0.1 3,316,159 - RALBFv3_RS15225 0.63 -0.6 3,316,159 - RALBFv3_RS15225 0.63 +0.3 3,316,498 - -0.9 3,316,717 + RALBFv3_RS15230 0.26 -0.7 3,316,860 + RALBFv3_RS15230 0.43 +0.9 3,317,148 + +1.6
Or see this region's nucleotide sequence