Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS12090

Experiment: Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
2,667,283	+		RALBFv3_RS12085	0.29	+0.8
2,667,284	-		RALBFv3_RS12085	0.29	-0.6
2,667,303	+		RALBFv3_RS12085	0.32	-0.4
2,667,303	+		RALBFv3_RS12085	0.32	-0.6
2,667,303	+		RALBFv3_RS12085	0.32	-0.2
2,667,303	+		RALBFv3_RS12085	0.32	-0.1
2,667,303	+		RALBFv3_RS12085	0.32	+1.2
2,667,303	+		RALBFv3_RS12085	0.32	-0.4
2,667,303	+		RALBFv3_RS12085	0.32	+0.3
2,667,303	+		RALBFv3_RS12085	0.32	+0.4
2,667,303	+		RALBFv3_RS12085	0.32	+0.2
2,667,303	+		RALBFv3_RS12085	0.32	+1.0
2,667,303	+		RALBFv3_RS12085	0.32	-0.5
2,667,303	+		RALBFv3_RS12085	0.32	-0.7
2,667,303	+		RALBFv3_RS12085	0.32	+1.2
2,667,303	+		RALBFv3_RS12085	0.32	-0.4
2,667,303	+		RALBFv3_RS12085	0.32	+0.1
2,667,303	+		RALBFv3_RS12085	0.32	-0.2
2,667,303	+		RALBFv3_RS12085	0.32	+0.1
2,667,304	-		RALBFv3_RS12085	0.32	+1.8
2,667,304	-		RALBFv3_RS12085	0.32	-1.2
2,667,304	-		RALBFv3_RS12085	0.32	-0.9
2,667,304	-		RALBFv3_RS12085	0.32	-0.8
2,667,304	-		RALBFv3_RS12085	0.32	-0.4
2,667,304	-		RALBFv3_RS12085	0.32	+0.2
2,667,304	-		RALBFv3_RS12085	0.32	-1.2
2,667,304	-		RALBFv3_RS12085	0.32	-0.6
2,667,304	-		RALBFv3_RS12085	0.32	-0.2
2,667,304	-		RALBFv3_RS12085	0.32	+0.9
2,667,304	-		RALBFv3_RS12085	0.32	-1.4
2,667,304	-		RALBFv3_RS12085	0.32	+0.4
2,667,304	-		RALBFv3_RS12085	0.32	-1.2
2,667,304	-		RALBFv3_RS12085	0.32	+0.0
2,667,304	-		RALBFv3_RS12085	0.32	-0.3
2,667,304	-		RALBFv3_RS12085	0.32	+0.4
2,667,307	+		RALBFv3_RS12085	0.33	-0.5
2,667,307	+		RALBFv3_RS12085	0.33	-1.3
2,667,307	+		RALBFv3_RS12085	0.33	-0.9
2,667,307	+		RALBFv3_RS12085	0.33	-0.6
2,667,307	+		RALBFv3_RS12085	0.33	+0.5
2,667,307	+		RALBFv3_RS12085	0.33	-0.6
2,667,307	+		RALBFv3_RS12085	0.33	-1.6
2,667,307	+		RALBFv3_RS12085	0.33	-2.0
2,667,307	+		RALBFv3_RS12085	0.33	+0.4
2,667,307	+		RALBFv3_RS12085	0.33	-0.2
2,667,307	+		RALBFv3_RS12085	0.33	-0.6
2,667,307	+		RALBFv3_RS12085	0.33	+0.2
2,667,307	+		RALBFv3_RS12085	0.33	+0.7
2,667,308	-		RALBFv3_RS12085	0.33	+1.0
2,667,308	-		RALBFv3_RS12085	0.33	+0.6
2,667,308	-		RALBFv3_RS12085	0.33	-0.6
2,667,308	-		RALBFv3_RS12085	0.33	-0.4
2,667,308	-		RALBFv3_RS12085	0.33	+0.5
2,667,308	-		RALBFv3_RS12085	0.33	+0.4
2,667,343	+		RALBFv3_RS12085	0.39	+0.4
2,667,343	+		RALBFv3_RS12085	0.39	+0.2
2,667,343	+		RALBFv3_RS12085	0.39	-0.3
2,667,344	-		RALBFv3_RS12085	0.39	+0.8
2,667,344	-		RALBFv3_RS12085	0.39	+0.1
2,667,372	+		RALBFv3_RS12085	0.44	+1.2
2,667,372	+		RALBFv3_RS12085	0.44	-0.4
2,667,372	+		RALBFv3_RS12085	0.44	+1.4
2,667,372	+		RALBFv3_RS12085	0.44	-0.5
2,667,372	+		RALBFv3_RS12085	0.44	-0.5
2,667,372	+		RALBFv3_RS12085	0.44	-0.6
2,667,372	+		RALBFv3_RS12085	0.44	-0.5
2,667,372	+		RALBFv3_RS12085	0.44	-0.7
2,667,372	+		RALBFv3_RS12085	0.44	-0.0
2,667,372	+		RALBFv3_RS12085	0.44	-0.4
2,667,373	-		RALBFv3_RS12085	0.44	+1.2
2,667,373	-		RALBFv3_RS12085	0.44	-0.9
2,667,373	-		RALBFv3_RS12085	0.44	-0.9
2,667,373	-		RALBFv3_RS12085	0.44	-0.2
2,667,373	-		RALBFv3_RS12085	0.44	-1.6
2,667,493	+		RALBFv3_RS12085	0.64	-1.0
2,667,494	-		RALBFv3_RS12085	0.64	-1.2
2,667,495	+		RALBFv3_RS12085	0.64	-0.4
2,667,495	+		RALBFv3_RS12085	0.64	+0.1
2,667,495	+		RALBFv3_RS12085	0.64	-0.6
2,667,495	+		RALBFv3_RS12085	0.64	-0.2
2,667,495	+		RALBFv3_RS12085	0.64	-0.5
2,667,495	+		RALBFv3_RS12085	0.64	+0.3
2,667,496	-		RALBFv3_RS12085	0.64	+0.5
2,667,496	-		RALBFv3_RS12085	0.64	+4.0
2,667,496	-		RALBFv3_RS12085	0.64	+0.8
2,667,496	-		RALBFv3_RS12085	0.64	+2.4
2,667,496	-		RALBFv3_RS12085	0.64	-1.0
2,667,502	+		RALBFv3_RS12085	0.65	+0.9
2,667,502	+		RALBFv3_RS12085	0.65	-0.3
2,667,502	+		RALBFv3_RS12085	0.65	-0.9
2,667,503	-		RALBFv3_RS12085	0.66	+1.4
2,667,503	-		RALBFv3_RS12085	0.66	-0.5
2,667,503	-		RALBFv3_RS12085	0.66	-0.3
2,667,503	-		RALBFv3_RS12085	0.66	+0.6
2,667,550	+		RALBFv3_RS12085	0.73	-0.0
2,667,580	+		RALBFv3_RS12085	0.78	-0.3
2,667,580	+		RALBFv3_RS12085	0.78	+1.1
2,667,581	-		RALBFv3_RS12085	0.79	-0.4
2,667,581	-		RALBFv3_RS12085	0.79	-0.4
2,667,661	+				-0.6
2,667,661	+				-0.7
2,667,661	+				+1.4
2,667,661	+				+0.7
2,667,661	+				-0.7
2,667,662	-				-1.0
2,667,662	-				+0.5
2,667,662	-				-0.5
2,667,662	-				-0.9
2,667,662	-				-0.2
2,667,662	-				-1.1
2,667,662	-				+1.4
2,667,700	+				-0.3
2,667,701	-				-0.2
2,667,705	+				+1.3
2,667,707	+				-0.7
2,667,707	+				-1.5
2,667,707	+				+0.2
2,667,707	+				+0.7
2,667,707	+				-0.5
2,667,707	+				+0.3
2,667,707	+				-1.0
2,667,708	-				+1.1
2,667,708	-				+2.4
2,667,708	-				+0.8
2,667,708	-				-0.2
2,667,708	-				+0.4
2,667,708	-				-0.4
2,667,708	-				-0.5
2,667,708	-				-0.4
2,667,816	+		RALBFv3_RS23980	0.46	-1.4
2,667,816	+		RALBFv3_RS23980	0.46	+1.6
2,667,816	+		RALBFv3_RS23980	0.46	-1.1
2,667,816	+		RALBFv3_RS23980	0.46	-1.0
2,667,817	-		RALBFv3_RS23980	0.47	+0.3
2,667,817	-		RALBFv3_RS23980	0.47	-0.8
2,667,817	-		RALBFv3_RS23980	0.47	+0.2
2,667,817	-		RALBFv3_RS23980	0.47	+0.6
2,667,817	-		RALBFv3_RS23980	0.47	-0.9
2,667,908	+		RALBFv3_RS23980	0.84	+0.5
2,667,908	+		RALBFv3_RS23980	0.84	+0.2
2,667,909	-		RALBFv3_RS23980	0.84	-0.3
2,667,909	-		RALBFv3_RS23980	0.84	-0.8
2,667,909	-		RALBFv3_RS23980	0.84	-1.4
2,667,909	-		RALBFv3_RS23980	0.84	-0.3
2,667,909	-		RALBFv3_RS23980	0.84	-1.1
2,667,931	+				+0.0
2,667,931	+				+0.8
2,667,932	-				-0.4
2,667,932	-				-1.5
2,667,932	-				-0.4
2,667,964	+				-1.2
2,667,964	+				-0.2
2,667,964	+				+0.4
2,667,964	+				+0.9
2,667,964	+				+0.7
2,667,964	+				-0.2
2,667,964	+				-1.4
2,667,965	-				+2.4
2,667,965	-				-1.1
2,667,965	-				+1.2
2,667,965	-				+1.1
2,667,965	-				+0.4
2,667,965	-				+0.1
2,667,965	-				+0.4
2,667,965	-				-0.0
2,667,965	-				+1.4
2,667,990	+				-0.3
2,667,991	-				+0.6
2,667,992	+				-1.5
2,668,131	+				-1.1
2,668,132	-				-0.1
2,668,132	-				+0.8
2,668,132	-				-0.1
2,668,132	-				-1.0
2,668,154	+				-0.3
2,668,154	+				-0.4
2,668,154	+				+0.4
2,668,154	+				-0.4
2,668,155	-				+0.3
2,668,155	-				-1.2
2,668,155	-				-1.4
2,668,155	-				-1.4
2,668,155	-				-1.3
2,668,158	+				+0.4
2,668,158	+				-0.3
2,668,158	+				-1.0
2,668,158	+				-0.6
2,668,158	+				-0.5
2,668,158	+				+0.7
2,668,158	+				-0.1
2,668,158	+				+0.1
2,668,158	+				-0.7
2,668,158	+				-0.6
2,668,159	-				-1.1
2,668,159	-				+0.6
2,668,159	-				+1.3
2,668,159	-				+2.0
2,668,159	-				-0.1
2,668,159	-				+2.5
2,668,159	-				+0.2
2,668,159	-				-0.3
2,668,159	-				-0.8
2,668,159	-				+2.4
2,668,159	-				+0.9
2,668,159	-				+2.1
2,668,182	+				+1.1
2,668,182	+				+0.4
2,668,183	-				-0.1
2,668,183	-				-0.8
2,668,183	-				-0.6
2,668,183	-				-0.3
2,668,183	-				-0.6
2,668,223	+				-0.8
2,668,223	+				-0.0
2,668,224	-				+1.4
2,668,224	-				-0.4
2,668,224	-				-0.3
2,668,224	-				-1.3
2,668,224	-				+0.9
2,668,334	+		RALBFv3_RS12090	0.10	-0.5
2,668,334	+		RALBFv3_RS12090	0.10	-0.4
2,668,334	+		RALBFv3_RS12090	0.10	+0.9
2,668,334	+		RALBFv3_RS12090	0.10	-0.9
2,668,334	+		RALBFv3_RS12090	0.10	-1.6
2,668,335	-		RALBFv3_RS12090	0.10	+1.0
2,668,335	-		RALBFv3_RS12090	0.10	-0.7
2,668,335	-		RALBFv3_RS12090	0.10	+2.4
2,668,335	-		RALBFv3_RS12090	0.10	-0.7
2,668,335	-		RALBFv3_RS12090	0.10	-1.5
2,668,335	-		RALBFv3_RS12090	0.10	+0.8
2,668,349	+		RALBFv3_RS12090	0.12	+1.0
2,668,349	+		RALBFv3_RS12090	0.12	-1.5
2,668,349	+		RALBFv3_RS12090	0.12	+0.8
2,668,349	+		RALBFv3_RS12090	0.12	-0.2
2,668,349	+		RALBFv3_RS12090	0.12	-0.7
2,668,350	-		RALBFv3_RS12090	0.12	-1.0
2,668,350	-		RALBFv3_RS12090	0.12	+0.8
2,668,350	-		RALBFv3_RS12090	0.12	-0.2
2,668,367	-		RALBFv3_RS12090	0.14	-0.4
2,668,379	+		RALBFv3_RS12090	0.16	+0.8
2,668,379	+		RALBFv3_RS12090	0.16	+2.4
2,668,380	-		RALBFv3_RS12090	0.16	-1.3
2,668,380	-		RALBFv3_RS12090	0.16	+0.3
2,668,380	-		RALBFv3_RS12090	0.16	-1.0
2,668,380	-		RALBFv3_RS12090	0.16	+0.0
2,668,380	-		RALBFv3_RS12090	0.16	-1.3
2,668,380	-		RALBFv3_RS12090	0.16	+0.3
2,668,380	-		RALBFv3_RS12090	0.16	-1.5
2,668,406	+		RALBFv3_RS12090	0.19	-0.8
2,668,406	+		RALBFv3_RS12090	0.19	+0.4
2,668,406	+		RALBFv3_RS12090	0.19	+0.8
2,668,406	+		RALBFv3_RS12090	0.19	+0.8
2,668,406	+		RALBFv3_RS12090	0.19	+1.2
2,668,406	+		RALBFv3_RS12090	0.19	-0.3
2,668,406	+		RALBFv3_RS12090	0.19	-0.4
2,668,406	+		RALBFv3_RS12090	0.19	-2.9
2,668,407	-		RALBFv3_RS12090	0.19	-0.5
2,668,407	-		RALBFv3_RS12090	0.19	-0.5
2,668,407	-		RALBFv3_RS12090	0.19	-0.4
2,668,407	-		RALBFv3_RS12090	0.19	-1.4
2,668,407	-		RALBFv3_RS12090	0.19	-0.5
2,668,407	-		RALBFv3_RS12090	0.19	+0.3
2,668,407	-		RALBFv3_RS12090	0.19	-0.2
2,668,407	-		RALBFv3_RS12090	0.19	+0.5
2,668,463	+		RALBFv3_RS12090	0.26	+1.5
2,668,463	+		RALBFv3_RS12090	0.26	+1.1
2,668,463	+		RALBFv3_RS12090	0.26	+0.1
2,668,463	+		RALBFv3_RS12090	0.26	-1.3
2,668,463	+		RALBFv3_RS12090	0.26	+0.4
2,668,464	-		RALBFv3_RS12090	0.26	+1.8
2,668,464	-		RALBFv3_RS12090	0.26	+0.4
2,668,464	-		RALBFv3_RS12090	0.26	-0.5
2,668,464	-		RALBFv3_RS12090	0.26	-0.6
2,668,464	-		RALBFv3_RS12090	0.26	+1.1
2,668,522	+		RALBFv3_RS12090	0.34	-0.5
2,668,523	-		RALBFv3_RS12090	0.34	-0.6
2,668,645	+		RALBFv3_RS12090	0.49	-0.6
2,668,645	+		RALBFv3_RS12090	0.49	-0.1
2,668,645	+		RALBFv3_RS12090	0.49	+0.3
2,668,645	+		RALBFv3_RS12090	0.49	+1.2
2,668,646	-		RALBFv3_RS12090	0.49	-0.3
2,668,646	-		RALBFv3_RS12090	0.49	-1.8
2,668,646	-		RALBFv3_RS12090	0.49	+0.1
2,668,705	+		RALBFv3_RS12090	0.56	-0.1
2,668,705	+		RALBFv3_RS12090	0.56	-0.9
2,668,706	-		RALBFv3_RS12090	0.56	-0.7
2,668,706	-		RALBFv3_RS12090	0.56	-2.1
2,668,706	-		RALBFv3_RS12090	0.56	+0.1
2,668,706	-		RALBFv3_RS12090	0.56	+1.5
2,668,706	-		RALBFv3_RS12090	0.56	+1.8
2,668,706	-		RALBFv3_RS12090	0.56	+0.4
2,668,706	-		RALBFv3_RS12090	0.56	-0.1
2,668,706	-		RALBFv3_RS12090	0.56	-0.6
2,668,706	-		RALBFv3_RS12090	0.56	-0.3
2,668,706	-		RALBFv3_RS12090	0.56	+1.4
2,668,798	+		RALBFv3_RS12090	0.68	+0.7
2,668,799	-		RALBFv3_RS12090	0.68	+0.1
2,668,799	-		RALBFv3_RS12090	0.68	-0.6
2,668,799	-		RALBFv3_RS12090	0.68	+2.4
2,668,806	+		RALBFv3_RS12090	0.69	-0.1
2,668,807	-		RALBFv3_RS12090	0.69	+1.2
2,668,857	+		RALBFv3_RS12090	0.75	-0.7
2,668,857	+		RALBFv3_RS12090	0.75	+0.5
2,668,857	+		RALBFv3_RS12090	0.75	-0.7
2,668,858	-		RALBFv3_RS12090	0.75	+0.4
2,668,858	-		RALBFv3_RS12090	0.75	-0.9
2,668,858	-		RALBFv3_RS12090	0.75	-0.5
2,668,858	-		RALBFv3_RS12090	0.75	-0.4
2,668,957	-		RALBFv3_RS12090	0.87	-0.7
2,668,980	+				+0.0
2,668,980	+				-0.2
2,668,992	+				-0.4
2,668,993	-				-0.7
2,668,993	-				-0.8
2,668,993	-				-0.8
2,668,993	-				+1.2
2,668,993	-				-0.3
2,668,993	-				-0.7
2,668,994	+				-0.4
2,668,994	+				+1.3
2,668,995	-				-0.4
2,668,995	-				-0.0
2,669,005	-				-1.5
2,669,037	+				-1.0
2,669,037	+				+0.4
2,669,038	-				+0.6
2,669,038	-				-1.0
2,669,164	+		RALBFv3_RS12095	0.24	+0.0
2,669,164	+		RALBFv3_RS12095	0.24	-0.5
2,669,164	+		RALBFv3_RS12095	0.24	-0.0
2,669,219	+		RALBFv3_RS12095	0.37	+1.5
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