Experiment: Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS07405 and RALBFv3_RS07410 overlap by 26 nucleotides RALBFv3_RS07410 and RALBFv3_RS07415 overlap by 14 nucleotides RALBFv3_RS07415 and RALBFv3_RS07420 are separated by 57 nucleotides RALBFv3_RS07420 and RALBFv3_RS07425 are separated by 213 nucleotides
RALBFv3_RS07405: RALBFv3_RS07405 - DUF1415 domain-containing protein, at 1,630,273 to 1,630,899
_RS07405
RALBFv3_RS07410: RALBFv3_RS07410 - PIN domain-containing protein, at 1,630,874 to 1,631,287
_RS07410
RALBFv3_RS07415: RALBFv3_RS07415 - AbrB/MazE/SpoVT family DNA-binding domain-containing protein, at 1,631,274 to 1,631,507
_RS07415
RALBFv3_RS07420: RALBFv3_RS07420 - glucan biosynthesis protein D, at 1,631,565 to 1,633,172
_RS07420
RALBFv3_RS07425: RALBFv3_RS07425 - N-acylglucosamine 2-epimerase, at 1,633,386 to 1,634,636
_RS07425
Position (kb) 1631
1632
1633
1634 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1630.807 kb on + strand, within RALBFv3_RS07405 at 1630.807 kb on + strand, within RALBFv3_RS07405 at 1630.807 kb on + strand, within RALBFv3_RS07405 at 1630.807 kb on + strand, within RALBFv3_RS07405 at 1630.807 kb on + strand, within RALBFv3_RS07405 at 1630.876 kb on - strand at 1630.950 kb on + strand, within RALBFv3_RS07410 at 1631.001 kb on + strand, within RALBFv3_RS07410 at 1631.198 kb on + strand, within RALBFv3_RS07410 at 1631.199 kb on - strand, within RALBFv3_RS07410 at 1631.244 kb on + strand, within RALBFv3_RS07410 at 1631.244 kb on + strand, within RALBFv3_RS07410 at 1631.244 kb on + strand, within RALBFv3_RS07410 at 1631.336 kb on - strand, within RALBFv3_RS07415 at 1631.551 kb on + strand at 1631.553 kb on + strand at 1631.566 kb on + strand at 1631.566 kb on + strand at 1631.566 kb on + strand at 1631.567 kb on - strand at 1632.127 kb on + strand, within RALBFv3_RS07420 at 1632.365 kb on - strand, within RALBFv3_RS07420 at 1632.453 kb on - strand, within RALBFv3_RS07420 at 1632.514 kb on + strand, within RALBFv3_RS07420 at 1632.664 kb on + strand, within RALBFv3_RS07420 at 1632.665 kb on - strand, within RALBFv3_RS07420 at 1632.665 kb on - strand, within RALBFv3_RS07420 at 1632.949 kb on + strand, within RALBFv3_RS07420 at 1633.006 kb on + strand, within RALBFv3_RS07420 at 1633.007 kb on - strand, within RALBFv3_RS07420 at 1633.007 kb on - strand, within RALBFv3_RS07420 at 1633.097 kb on + strand at 1633.103 kb on + strand at 1633.103 kb on + strand at 1633.104 kb on - strand at 1633.104 kb on - strand at 1633.351 kb on + strand at 1633.352 kb on - strand at 1633.415 kb on - strand at 1633.537 kb on - strand, within RALBFv3_RS07425 at 1633.620 kb on + strand, within RALBFv3_RS07425 at 1633.791 kb on + strand, within RALBFv3_RS07425 at 1633.792 kb on - strand, within RALBFv3_RS07425 at 1633.792 kb on - strand, within RALBFv3_RS07425 at 1634.144 kb on + strand, within RALBFv3_RS07425
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 1,630,807 + RALBFv3_RS07405 0.85 -1.9 1,630,807 + RALBFv3_RS07405 0.85 -2.9 1,630,807 + RALBFv3_RS07405 0.85 +2.3 1,630,807 + RALBFv3_RS07405 0.85 +0.5 1,630,807 + RALBFv3_RS07405 0.85 -0.4 1,630,876 - +3.5 1,630,950 + RALBFv3_RS07410 0.18 -1.4 1,631,001 + RALBFv3_RS07410 0.31 +0.7 1,631,198 + RALBFv3_RS07410 0.78 -0.3 1,631,199 - RALBFv3_RS07410 0.79 +0.5 1,631,244 + RALBFv3_RS07410 0.89 -0.8 1,631,244 + RALBFv3_RS07410 0.89 +0.3 1,631,244 + RALBFv3_RS07410 0.89 +1.3 1,631,336 - RALBFv3_RS07415 0.26 -0.6 1,631,551 + +1.2 1,631,553 + -0.3 1,631,566 + -0.2 1,631,566 + -1.4 1,631,566 + -0.5 1,631,567 - -0.3 1,632,127 + RALBFv3_RS07420 0.35 +1.1 1,632,365 - RALBFv3_RS07420 0.50 +1.9 1,632,453 - RALBFv3_RS07420 0.55 -0.0 1,632,514 + RALBFv3_RS07420 0.59 -1.4 1,632,664 + RALBFv3_RS07420 0.68 -0.2 1,632,665 - RALBFv3_RS07420 0.68 +0.9 1,632,665 - RALBFv3_RS07420 0.68 +0.0 1,632,949 + RALBFv3_RS07420 0.86 -0.8 1,633,006 + RALBFv3_RS07420 0.90 -0.7 1,633,007 - RALBFv3_RS07420 0.90 +1.3 1,633,007 - RALBFv3_RS07420 0.90 +1.5 1,633,097 + -0.1 1,633,103 + +1.5 1,633,103 + -0.7 1,633,104 - +0.8 1,633,104 - +1.1 1,633,351 + -1.4 1,633,352 - -1.1 1,633,415 - +0.3 1,633,537 - RALBFv3_RS07425 0.12 -2.1 1,633,620 + RALBFv3_RS07425 0.19 -3.3 1,633,791 + RALBFv3_RS07425 0.32 -0.8 1,633,792 - RALBFv3_RS07425 0.32 +1.0 1,633,792 - RALBFv3_RS07425 0.32 +2.5 1,634,144 + RALBFv3_RS07425 0.61 -2.9
Or see this region's nucleotide sequence