Experiment: Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS03270 and RALBFv3_RS03275 are separated by 49 nucleotides RALBFv3_RS03275 and RALBFv3_RS03280 are separated by 73 nucleotides RALBFv3_RS03280 and RALBFv3_RS03285 are separated by 59 nucleotides RALBFv3_RS03285 and RALBFv3_RS03290 are separated by 293 nucleotides
RALBFv3_RS03270: RALBFv3_RS03270 - aminopeptidase N, at 715,555 to 718,272
_RS03270
RALBFv3_RS03275: RALBFv3_RS03275 - class 1 fructose-bisphosphatase, at 718,322 to 719,329
_RS03275
RALBFv3_RS03280: RALBFv3_RS03280 - tRNA-Thr, at 719,403 to 719,478
_RS03280
RALBFv3_RS03285: RALBFv3_RS03285 - peptidoglycan-binding protein LysM, at 719,538 to 720,014
_RS03285
RALBFv3_RS03290: RALBFv3_RS03290 - esterase, at 720,308 to 721,339
_RS03290
Position (kb) 718
719
720 Strain fitness (log2 ratio) -1
0
1
2 at 717.517 kb on + strand, within RALBFv3_RS03270 at 717.518 kb on - strand, within RALBFv3_RS03270 at 717.760 kb on + strand, within RALBFv3_RS03270 at 717.760 kb on + strand, within RALBFv3_RS03270 at 717.761 kb on - strand, within RALBFv3_RS03270 at 717.820 kb on + strand, within RALBFv3_RS03270 at 717.821 kb on - strand, within RALBFv3_RS03270 at 717.821 kb on - strand, within RALBFv3_RS03270 at 717.856 kb on + strand, within RALBFv3_RS03270 at 718.166 kb on - strand at 718.295 kb on - strand at 719.329 kb on - strand at 719.626 kb on + strand, within RALBFv3_RS03285 at 719.691 kb on - strand, within RALBFv3_RS03285 at 719.884 kb on + strand, within RALBFv3_RS03285 at 719.884 kb on + strand, within RALBFv3_RS03285 at 719.884 kb on + strand, within RALBFv3_RS03285 at 719.885 kb on - strand, within RALBFv3_RS03285 at 719.885 kb on - strand, within RALBFv3_RS03285 at 719.885 kb on - strand, within RALBFv3_RS03285 at 719.885 kb on - strand, within RALBFv3_RS03285
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 717,517 + RALBFv3_RS03270 0.72 -0.8 717,518 - RALBFv3_RS03270 0.72 -0.3 717,760 + RALBFv3_RS03270 0.81 -0.1 717,760 + RALBFv3_RS03270 0.81 -0.2 717,761 - RALBFv3_RS03270 0.81 +1.2 717,820 + RALBFv3_RS03270 0.83 +0.8 717,821 - RALBFv3_RS03270 0.83 +0.4 717,821 - RALBFv3_RS03270 0.83 -0.2 717,856 + RALBFv3_RS03270 0.85 -1.3 718,166 - +0.2 718,295 - +0.2 719,329 - +0.2 719,626 + RALBFv3_RS03285 0.18 +0.0 719,691 - RALBFv3_RS03285 0.32 -1.0 719,884 + RALBFv3_RS03285 0.73 +1.6 719,884 + RALBFv3_RS03285 0.73 -0.5 719,884 + RALBFv3_RS03285 0.73 -0.9 719,885 - RALBFv3_RS03285 0.73 +1.1 719,885 - RALBFv3_RS03285 0.73 -0.3 719,885 - RALBFv3_RS03285 0.73 -1.4 719,885 - RALBFv3_RS03285 0.73 +2.3
Or see this region's nucleotide sequence