Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS14700

Experiment: R2A with Lomefloxacin 0.1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Lomefloxacin 0.1 mM
3,697,855	-		CA265_RS14695	0.39	+0.2
3,697,885	-		CA265_RS14695	0.41	+0.1
3,697,995	+		CA265_RS14695	0.48	-0.1
3,697,995	+		CA265_RS14695	0.48	+0.2
3,698,005	+		CA265_RS14695	0.48	-0.2
3,698,102	-		CA265_RS14695	0.54	+0.5
3,698,119	-		CA265_RS14695	0.55	+0.4
3,698,224	+		CA265_RS14695	0.62	-2.2
3,698,224	+		CA265_RS14695	0.62	+0.4
3,698,225	-		CA265_RS14695	0.62	-0.0
3,698,227	-		CA265_RS14695	0.62	-0.4
3,698,322	+		CA265_RS14695	0.68	+0.4
3,698,352	+		CA265_RS14695	0.70	-0.4
3,698,352	+		CA265_RS14695	0.70	+0.5
3,698,352	+		CA265_RS14695	0.70	-0.0
3,698,353	-		CA265_RS14695	0.70	-0.3
3,698,399	+		CA265_RS14695	0.73	-0.3
3,698,399	+		CA265_RS14695	0.73	-0.4
3,698,526	+		CA265_RS14695	0.81	+0.3
3,698,572	+		CA265_RS14695	0.84	-0.5
3,698,572	+		CA265_RS14695	0.84	-1.7
3,698,573	-		CA265_RS14695	0.84	-0.2
3,698,600	+		CA265_RS14695	0.85	+2.1
3,698,603	+		CA265_RS14695	0.86	-0.5
3,698,607	-		CA265_RS14695	0.86	+0.7
3,698,609	+		CA265_RS14695	0.86	+0.5
3,698,623	+		CA265_RS14695	0.87	-0.2
3,698,745	+				+0.0
3,698,811	+				+0.3
3,698,811	+				+0.4
3,698,815	+				-0.6
3,698,815	+				+2.1
3,698,815	+				+0.2
3,698,838	-				+0.8
3,698,871	+				+0.3
3,698,871	+				+0.3
3,698,871	+				-0.1
3,698,877	+				+0.0
3,698,914	+				+0.3
3,698,915	-				-0.4
3,698,915	-				+0.2
3,698,970	+				+0.3
3,699,009	+				-0.5
3,699,010	-				+0.4
3,699,047	+				-0.2
3,699,138	-				+0.2
3,699,151	-		CA265_RS14700	0.10	-0.3
3,699,242	+		CA265_RS14700	0.13	-0.5
3,699,242	+		CA265_RS14700	0.13	+0.5
3,699,243	-		CA265_RS14700	0.13	-0.2
3,699,246	+		CA265_RS14700	0.13	-0.7
3,699,246	+		CA265_RS14700	0.13	+0.6
3,699,247	-		CA265_RS14700	0.13	+0.6
3,699,248	+		CA265_RS14700	0.13	+0.7
3,699,249	-		CA265_RS14700	0.13	+1.0
3,699,274	-		CA265_RS14700	0.14	-0.4
3,699,318	+		CA265_RS14700	0.16	-0.3
3,699,347	+		CA265_RS14700	0.16	+0.1
3,699,349	+		CA265_RS14700	0.17	-0.5
3,699,349	+		CA265_RS14700	0.17	-0.4
3,699,349	+		CA265_RS14700	0.17	+1.7
3,699,349	+		CA265_RS14700	0.17	+0.1
3,699,349	+		CA265_RS14700	0.17	-1.3
3,699,350	-		CA265_RS14700	0.17	-0.7
3,699,350	-		CA265_RS14700	0.17	+0.1
3,699,397	+		CA265_RS14700	0.18	+0.6
3,699,523	-		CA265_RS14700	0.22	-1.5
3,699,528	+		CA265_RS14700	0.22	+0.4
3,699,530	+		CA265_RS14700	0.22	+0.2
3,699,556	+		CA265_RS14700	0.23	-0.5
3,699,625	-		CA265_RS14700	0.25	+0.1
3,699,805	+		CA265_RS14700	0.31	-0.4
3,699,888	+		CA265_RS14700	0.34	-0.3
3,699,888	+		CA265_RS14700	0.34	-0.8
3,699,897	+		CA265_RS14700	0.34	+0.1
3,699,898	-		CA265_RS14700	0.34	+0.1
3,699,898	-		CA265_RS14700	0.34	+0.4
3,699,899	+		CA265_RS14700	0.34	+0.2
3,699,900	-		CA265_RS14700	0.34	+0.7
3,699,917	+		CA265_RS14700	0.35	+0.5
3,700,063	-		CA265_RS14700	0.40	-0.0
3,700,063	-		CA265_RS14700	0.40	+1.0
3,700,067	+		CA265_RS14700	0.40	+1.5
3,700,068	-		CA265_RS14700	0.40	-1.2
3,700,133	+		CA265_RS14700	0.42	-0.0
3,700,203	-		CA265_RS14700	0.44	+0.1
3,700,205	-		CA265_RS14700	0.44	+1.0
3,700,231	+		CA265_RS14700	0.45	-0.0
3,700,232	-		CA265_RS14700	0.45	+0.2
3,700,366	-		CA265_RS14700	0.49	-0.3
3,700,375	+		CA265_RS14700	0.50	+0.2
3,700,375	+		CA265_RS14700	0.50	+0.3
3,700,501	+		CA265_RS14700	0.54	-0.4
3,700,515	+		CA265_RS14700	0.54	+0.7
3,700,516	-		CA265_RS14700	0.54	+0.1
3,700,516	-		CA265_RS14700	0.54	-0.5
3,700,518	-		CA265_RS14700	0.54	+0.5
3,700,536	-		CA265_RS14700	0.55	+0.5
3,700,563	-		CA265_RS14700	0.56	+0.0
3,700,578	-		CA265_RS14700	0.56	-0.0
3,700,706	+		CA265_RS14700	0.60	-0.1
3,700,707	-		CA265_RS14700	0.60	+0.5
3,700,731	-		CA265_RS14700	0.61	+0.4
3,700,734	+		CA265_RS14700	0.61	+0.5
3,700,772	-		CA265_RS14700	0.62	+0.1
3,700,782	+		CA265_RS14700	0.63	-0.0
3,700,838	+		CA265_RS14700	0.65	+0.7
3,700,838	+		CA265_RS14700	0.65	+0.3
3,700,866	-		CA265_RS14700	0.65	+0.1
3,700,962	-		CA265_RS14700	0.69	+0.4
3,700,962	-		CA265_RS14700	0.69	+0.9
3,700,982	-		CA265_RS14700	0.69	+0.7
3,700,982	-		CA265_RS14700	0.69	+0.0
3,701,023	+		CA265_RS14700	0.71	-0.6
3,701,048	+		CA265_RS14700	0.71	+0.7
3,701,048	+		CA265_RS14700	0.71	-0.3
3,701,093	+		CA265_RS14700	0.73	+0.0
3,701,094	-		CA265_RS14700	0.73	-0.1
3,701,139	+		CA265_RS14700	0.74	+0.9
3,701,144	+		CA265_RS14700	0.74	+0.8
3,701,144	+		CA265_RS14700	0.74	+0.1
3,701,144	+		CA265_RS14700	0.74	+0.8
3,701,223	-		CA265_RS14700	0.77	+0.9
3,701,224	+		CA265_RS14700	0.77	+0.2
3,701,283	+		CA265_RS14700	0.79	+0.0
3,701,325	+		CA265_RS14700	0.80	-0.3
3,701,461	+		CA265_RS14700	0.85	+0.1
3,701,559	+		CA265_RS14700	0.88	+0.0
3,701,560	-		CA265_RS14700	0.88	+0.2
3,701,560	-		CA265_RS14700	0.88	-0.7
3,701,815	+				+0.0
3,701,816	-				+0.5
3,701,816	-				-1.1
3,701,824	+				+1.3
3,701,825	-				+0.9
3,701,881	+				+0.4
3,701,882	-				+0.1
3,701,882	-				-0.2
3,701,914	+				+1.5
3,701,915	-				-0.0
3,701,981	+				+0.3
3,701,982	-				-1.1
3,701,984	-				+0.4
3,701,984	-				-0.0
3,701,985	+				+0.3
3,702,093	-		CA265_RS14705	0.12	-0.1
3,702,128	-		CA265_RS14705	0.16	+1.6
3,702,142	-		CA265_RS14705	0.17	+1.3
3,702,150	+		CA265_RS14705	0.18	+0.4
3,702,212	+		CA265_RS14705	0.24	+0.6
3,702,212	+		CA265_RS14705	0.24	-0.2
3,702,233	+		CA265_RS14705	0.26	+0.2
3,702,264	-		CA265_RS14705	0.29	+0.4
3,702,303	-		CA265_RS14705	0.33	-1.9
3,702,303	-		CA265_RS14705	0.33	-0.5
3,702,318	-		CA265_RS14705	0.34	-0.1
3,702,340	-		CA265_RS14705	0.36	-0.2
3,702,355	-		CA265_RS14705	0.38	-0.1
3,702,392	+		CA265_RS14705	0.42	+0.0
3,702,393	-		CA265_RS14705	0.42	+0.7
3,702,438	-		CA265_RS14705	0.46	-0.5
3,702,447	-		CA265_RS14705	0.47	-0.3
3,702,458	+		CA265_RS14705	0.48	+0.5
3,702,499	+		CA265_RS14705	0.52	-0.1
3,702,586	-		CA265_RS14705	0.61	+0.0
3,702,586	-		CA265_RS14705	0.61	-1.4
3,702,586	-		CA265_RS14705	0.61	+0.1
3,702,615	+		CA265_RS14705	0.64	-0.4
3,702,616	-		CA265_RS14705	0.64	+0.2
3,702,616	-		CA265_RS14705	0.64	-1.2
3,702,616	-		CA265_RS14705	0.64	-0.3
3,702,619	-		CA265_RS14705	0.64	+0.3
3,702,619	-		CA265_RS14705	0.64	-0.0
3,702,647	+		CA265_RS14705	0.67	+0.3
3,702,669	-		CA265_RS14705	0.69	+0.1
3,702,673	+		CA265_RS14705	0.69	+0.5
3,702,673	+		CA265_RS14705	0.69	+0.9
3,702,734	-		CA265_RS14705	0.75	+1.2
3,702,741	-		CA265_RS14705	0.76	-1.0
3,702,856	-		CA265_RS14705	0.87	-0.0
3,702,865	+		CA265_RS14705	0.88	+0.2
3,702,885	-				-0.2
3,702,895	-				+1.3
3,702,895	-				-0.3