Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS00405

Experiment: R2A with Lomefloxacin 0.1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS00400 and CA265_RS00405 overlap by 4 nucleotidesCA265_RS00405 and CA265_RS00410 are separated by 11 nucleotides CA265_RS00400: CA265_RS00400 - hypothetical protein, at 88,371 to 90,113 _RS00400 CA265_RS00405: CA265_RS00405 - DNA-binding response regulator, at 90,110 to 90,868 _RS00405 CA265_RS00410: CA265_RS00410 - hypothetical protein, at 90,880 to 92,400 _RS00410 Position (kb) 90 91Strain fitness (log2 ratio) -1 0 1 2at 89.117 kb on + strand, within CA265_RS00400at 89.126 kb on + strand, within CA265_RS00400at 89.231 kb on - strand, within CA265_RS00400at 89.246 kb on + strand, within CA265_RS00400at 89.313 kb on + strand, within CA265_RS00400at 89.353 kb on + strand, within CA265_RS00400at 89.353 kb on + strand, within CA265_RS00400at 89.353 kb on + strand, within CA265_RS00400at 89.354 kb on - strand, within CA265_RS00400at 89.364 kb on - strand, within CA265_RS00400at 89.369 kb on + strand, within CA265_RS00400at 89.369 kb on + strand, within CA265_RS00400at 89.398 kb on + strand, within CA265_RS00400at 89.421 kb on - strand, within CA265_RS00400at 89.421 kb on - strand, within CA265_RS00400at 89.728 kb on - strand, within CA265_RS00400at 89.804 kb on - strand, within CA265_RS00400at 89.860 kb on + strand, within CA265_RS00400at 89.860 kb on + strand, within CA265_RS00400at 89.861 kb on - strand, within CA265_RS00400at 89.888 kb on + strand, within CA265_RS00400at 89.896 kb on + strand, within CA265_RS00400at 89.897 kb on - strand, within CA265_RS00400at 89.918 kb on + strand, within CA265_RS00400at 89.919 kb on - strand, within CA265_RS00400at 89.963 kb on + strandat 90.109 kb on + strandat 90.109 kb on + strandat 90.110 kb on - strandat 90.115 kb on - strandat 90.161 kb on + strandat 90.162 kb on + strandat 90.163 kb on - strandat 90.169 kb on - strandat 90.169 kb on - strandat 90.277 kb on - strand, within CA265_RS00405at 90.277 kb on - strand, within CA265_RS00405at 90.318 kb on + strand, within CA265_RS00405at 90.342 kb on + strand, within CA265_RS00405at 90.365 kb on + strand, within CA265_RS00405at 90.366 kb on - strand, within CA265_RS00405at 90.397 kb on - strand, within CA265_RS00405at 90.401 kb on + strand, within CA265_RS00405at 90.402 kb on - strand, within CA265_RS00405at 90.432 kb on + strand, within CA265_RS00405at 90.520 kb on + strand, within CA265_RS00405at 90.521 kb on - strand, within CA265_RS00405at 90.584 kb on - strand, within CA265_RS00405at 90.633 kb on - strand, within CA265_RS00405at 90.695 kb on - strand, within CA265_RS00405at 90.732 kb on + strand, within CA265_RS00405at 90.799 kb on + strandat 90.837 kb on + strandat 90.842 kb on - strandat 90.888 kb on + strandat 90.888 kb on + strandat 90.888 kb on + strandat 90.893 kb on + strandat 90.896 kb on - strandat 90.909 kb on - strandat 90.909 kb on - strandat 90.909 kb on - strandat 90.980 kb on - strandat 90.980 kb on - strandat 90.980 kb on - strandat 91.008 kb on - strandat 91.035 kb on + strand, within CA265_RS00410at 91.154 kb on + strand, within CA265_RS00410at 91.190 kb on - strand, within CA265_RS00410at 91.207 kb on + strandat 91.208 kb on - strand, within CA265_RS00410at 91.251 kb on - strand, within CA265_RS00410at 91.266 kb on + strand, within CA265_RS00410at 91.267 kb on - strand, within CA265_RS00410at 91.404 kb on - strand, within CA265_RS00410at 91.404 kb on - strand, within CA265_RS00410at 91.407 kb on + strand, within CA265_RS00410at 91.477 kb on - strand, within CA265_RS00410at 91.496 kb on - strand, within CA265_RS00410at 91.496 kb on - strand, within CA265_RS00410at 91.543 kb on - strand, within CA265_RS00410at 91.551 kb on - strand, within CA265_RS00410at 91.613 kb on - strand, within CA265_RS00410at 91.623 kb on + strand, within CA265_RS00410at 91.624 kb on - strand, within CA265_RS00410at 91.660 kb on + strand, within CA265_RS00410at 91.661 kb on - strand, within CA265_RS00410at 91.718 kb on + strand, within CA265_RS00410at 91.729 kb on + strand, within CA265_RS00410at 91.729 kb on + strand, within CA265_RS00410at 91.751 kb on + strand, within CA265_RS00410at 91.779 kb on + strand, within CA265_RS00410at 91.780 kb on - strand, within CA265_RS00410at 91.821 kb on + strand, within CA265_RS00410at 91.822 kb on - strand, within CA265_RS00410at 91.822 kb on - strand, within CA265_RS00410at 91.824 kb on - strand, within CA265_RS00410

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Lomefloxacin 0.1 mM
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89,117 + CA265_RS00400 0.43 +0.2
89,126 + CA265_RS00400 0.43 +0.2
89,231 - CA265_RS00400 0.49 -0.1
89,246 + CA265_RS00400 0.50 -0.6
89,313 + CA265_RS00400 0.54 -0.6
89,353 + CA265_RS00400 0.56 -0.5
89,353 + CA265_RS00400 0.56 +0.5
89,353 + CA265_RS00400 0.56 -0.3
89,354 - CA265_RS00400 0.56 +0.2
89,364 - CA265_RS00400 0.57 -0.0
89,369 + CA265_RS00400 0.57 +0.6
89,369 + CA265_RS00400 0.57 +1.1
89,398 + CA265_RS00400 0.59 +1.1
89,421 - CA265_RS00400 0.60 -0.8
89,421 - CA265_RS00400 0.60 -0.1
89,728 - CA265_RS00400 0.78 +0.3
89,804 - CA265_RS00400 0.82 -0.5
89,860 + CA265_RS00400 0.85 +0.7
89,860 + CA265_RS00400 0.85 +1.8
89,861 - CA265_RS00400 0.85 -0.1
89,888 + CA265_RS00400 0.87 +0.6
89,896 + CA265_RS00400 0.87 +0.1
89,897 - CA265_RS00400 0.88 -0.0
89,918 + CA265_RS00400 0.89 -0.7
89,919 - CA265_RS00400 0.89 +0.1
89,963 + -1.3
90,109 + +0.0
90,109 + +0.4
90,110 - +0.3
90,115 - +0.6
90,161 + +0.2
90,162 + +0.0
90,163 - +0.4
90,169 - -0.1
90,169 - +0.5
90,277 - CA265_RS00405 0.22 -0.0
90,277 - CA265_RS00405 0.22 +0.8
90,318 + CA265_RS00405 0.27 -1.5
90,342 + CA265_RS00405 0.31 +0.2
90,365 + CA265_RS00405 0.34 -0.2
90,366 - CA265_RS00405 0.34 +1.2
90,397 - CA265_RS00405 0.38 +0.6
90,401 + CA265_RS00405 0.38 -0.5
90,402 - CA265_RS00405 0.38 +1.3
90,432 + CA265_RS00405 0.42 +0.2
90,520 + CA265_RS00405 0.54 +0.5
90,521 - CA265_RS00405 0.54 +0.6
90,584 - CA265_RS00405 0.62 -0.3
90,633 - CA265_RS00405 0.69 +0.0
90,695 - CA265_RS00405 0.77 -0.1
90,732 + CA265_RS00405 0.82 +0.1
90,799 + -0.7
90,837 + -0.4
90,842 - -0.8
90,888 + -0.5
90,888 + -0.1
90,888 + -0.0
90,893 + -0.1
90,896 - +0.0
90,909 - +0.1
90,909 - -0.6
90,909 - -1.1
90,980 - -0.6
90,980 - -0.5
90,980 - -0.3
91,008 - +0.1
91,035 + CA265_RS00410 0.10 +0.3
91,154 + CA265_RS00410 0.18 +0.1
91,190 - CA265_RS00410 0.20 -0.7
91,207 + +1.5
91,208 - CA265_RS00410 0.22 -0.5
91,251 - CA265_RS00410 0.24 -1.2
91,266 + CA265_RS00410 0.25 +0.5
91,267 - CA265_RS00410 0.25 -0.7
91,404 - CA265_RS00410 0.34 +0.3
91,404 - CA265_RS00410 0.34 -0.1
91,407 + CA265_RS00410 0.35 +0.1
91,477 - CA265_RS00410 0.39 +0.1
91,496 - CA265_RS00410 0.40 -0.5
91,496 - CA265_RS00410 0.40 +0.3
91,543 - CA265_RS00410 0.44 +0.1
91,551 - CA265_RS00410 0.44 +0.5
91,613 - CA265_RS00410 0.48 +1.2
91,623 + CA265_RS00410 0.49 +1.1
91,624 - CA265_RS00410 0.49 -0.4
91,660 + CA265_RS00410 0.51 +0.1
91,661 - CA265_RS00410 0.51 -0.7
91,718 + CA265_RS00410 0.55 -1.7
91,729 + CA265_RS00410 0.56 -0.7
91,729 + CA265_RS00410 0.56 +0.9
91,751 + CA265_RS00410 0.57 -0.1
91,779 + CA265_RS00410 0.59 +0.1
91,780 - CA265_RS00410 0.59 -0.5
91,821 + CA265_RS00410 0.62 +0.5
91,822 - CA265_RS00410 0.62 +0.8
91,822 - CA265_RS00410 0.62 +0.7
91,824 - CA265_RS00410 0.62 +0.9

Or see this region's nucleotide sequence