Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS33740

Experiment: L-Lactate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 nt AZOBR_RS33740: AZOBR_RS33740 - hypothetical protein, at 99,200 to 99,931 _RS33740 Position (kb) 99 100Strain fitness (log2 ratio) -1 0 1 2at 98.250 kb on + strandat 98.250 kb on + strandat 98.250 kb on + strandat 98.589 kb on + strandat 99.228 kb on + strandat 99.333 kb on + strand, within AZOBR_RS33740at 99.333 kb on + strand, within AZOBR_RS33740at 99.395 kb on - strand, within AZOBR_RS33740at 99.468 kb on + strand, within AZOBR_RS33740at 99.757 kb on - strand, within AZOBR_RS33740at 99.847 kb on + strand, within AZOBR_RS33740at 99.847 kb on + strand, within AZOBR_RS33740at 99.847 kb on + strand, within AZOBR_RS33740at 99.847 kb on + strand, within AZOBR_RS33740at 99.848 kb on - strand, within AZOBR_RS33740at 100.725 kb on + strandat 100.726 kb on - strandat 100.726 kb on - strandat 100.853 kb on + strandat 100.853 kb on + strandat 100.853 kb on + strandat 100.853 kb on + strandat 100.853 kb on + strandat 100.854 kb on - strandat 100.854 kb on - strandat 100.867 kb on + strandat 100.867 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
remove
98,250 + +0.1
98,250 + +0.1
98,250 + +0.3
98,589 + -0.6
99,228 + +0.5
99,333 + AZOBR_RS33740 0.18 +0.1
99,333 + AZOBR_RS33740 0.18 -0.5
99,395 - AZOBR_RS33740 0.27 -0.0
99,468 + AZOBR_RS33740 0.37 +0.8
99,757 - AZOBR_RS33740 0.76 +1.6
99,847 + AZOBR_RS33740 0.88 -0.1
99,847 + AZOBR_RS33740 0.88 +0.5
99,847 + AZOBR_RS33740 0.88 +0.8
99,847 + AZOBR_RS33740 0.88 +0.8
99,848 - AZOBR_RS33740 0.89 +1.5
100,725 + -0.1
100,726 - -0.2
100,726 - +0.3
100,853 + +0.5
100,853 + +2.3
100,853 + +0.6
100,853 + -0.6
100,853 + +2.1
100,854 - +0.4
100,854 - +0.0
100,867 + +0.1
100,867 + -0.1

Or see this region's nucleotide sequence