Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS20750

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS20740 and AZOBR_RS20745 are separated by 256 nucleotidesAZOBR_RS20745 and AZOBR_RS20750 are separated by 29 nucleotidesAZOBR_RS20750 and AZOBR_RS20755 overlap by 1 nucleotidesAZOBR_RS20755 and AZOBR_RS20760 are separated by 118 nucleotides AZOBR_RS20740: AZOBR_RS20740 - tRNA methyltransferase, at 1,411,453 to 1,411,926 _RS20740 AZOBR_RS20745: AZOBR_RS20745 - ubiquinol-cytochrome C reductase, at 1,412,183 to 1,412,752 _RS20745 AZOBR_RS20750: AZOBR_RS20750 - cytochrome B, at 1,412,782 to 1,414,050 _RS20750 AZOBR_RS20755: AZOBR_RS20755 - cytochrome C, at 1,414,050 to 1,414,814 _RS20755 AZOBR_RS20760: AZOBR_RS20760 - membrane protein, at 1,414,933 to 1,415,484 _RS20760 Position (kb) 1412 1413 1414 1415Strain fitness (log2 ratio) -2 -1 0 1 2at 1411.955 kb on - strandat 1412.050 kb on + strandat 1412.050 kb on + strandat 1412.050 kb on + strandat 1412.050 kb on + strandat 1412.050 kb on + strandat 1412.050 kb on + strandat 1412.050 kb on + strandat 1412.050 kb on + strandat 1412.051 kb on - strandat 1412.051 kb on - strandat 1412.051 kb on - strandat 1412.051 kb on - strandat 1412.137 kb on + strandat 1412.138 kb on - strandat 1412.159 kb on + strandat 1412.183 kb on - strandat 1412.906 kb on - strandat 1413.127 kb on + strand, within AZOBR_RS20750at 1413.139 kb on + strandat 1413.140 kb on - strandat 1413.217 kb on + strand, within AZOBR_RS20750at 1413.665 kb on - strand, within AZOBR_RS20750at 1413.902 kb on - strand, within AZOBR_RS20750at 1414.048 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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1,411,955 - -0.3
1,412,050 + -0.3
1,412,050 + +1.1
1,412,050 + -0.2
1,412,050 + -0.5
1,412,050 + +0.4
1,412,050 + -0.3
1,412,050 + -0.1
1,412,050 + -1.1
1,412,051 - +0.3
1,412,051 - +0.4
1,412,051 - +0.3
1,412,051 - +0.1
1,412,137 + -0.2
1,412,138 - -0.7
1,412,159 + +0.1
1,412,183 - +0.9
1,412,906 - -0.1
1,413,127 + AZOBR_RS20750 0.27 -1.9
1,413,139 + -0.7
1,413,140 - -0.1
1,413,217 + AZOBR_RS20750 0.34 -0.7
1,413,665 - AZOBR_RS20750 0.70 -0.9
1,413,902 - AZOBR_RS20750 0.88 +1.9
1,414,048 + -0.3

Or see this region's nucleotide sequence