Experiment: Thallium(I) acetate 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_29115 and AO353_29120 are separated by 165 nucleotides AO353_29120 and AO353_29125 overlap by 4 nucleotides AO353_29125 and AO353_29130 are separated by 22 nucleotides
AO353_29115: AO353_29115 - enamine deaminase RidA, at 6,326,456 to 6,326,872
_29115
AO353_29120: AO353_29120 - fimbrial assembly protein FimA, at 6,327,038 to 6,327,715
_29120
AO353_29125: AO353_29125 - acetylornithine deacetylase, at 6,327,712 to 6,328,860
_29125
AO353_29130: AO353_29130 - LysR family transcriptional regulator, at 6,328,883 to 6,329,794
_29130
Position (kb)
6327
6328
6329 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 6326.717 kb on + strand, within AO353_29115 at 6326.717 kb on + strand, within AO353_29115 at 6326.717 kb on + strand, within AO353_29115 at 6326.717 kb on + strand, within AO353_29115 at 6326.717 kb on + strand, within AO353_29115 at 6326.717 kb on + strand, within AO353_29115 at 6326.717 kb on + strand, within AO353_29115 at 6326.717 kb on + strand, within AO353_29115 at 6326.717 kb on + strand, within AO353_29115 at 6326.717 kb on + strand, within AO353_29115 at 6326.717 kb on + strand, within AO353_29115 at 6326.718 kb on - strand, within AO353_29115 at 6326.718 kb on - strand, within AO353_29115 at 6326.718 kb on - strand, within AO353_29115 at 6326.718 kb on - strand, within AO353_29115 at 6326.751 kb on - strand, within AO353_29115 at 6326.881 kb on - strand at 6326.916 kb on + strand at 6326.916 kb on + strand at 6326.917 kb on - strand at 6327.267 kb on - strand, within AO353_29120 at 6327.418 kb on - strand, within AO353_29120 at 6327.651 kb on - strand at 6327.651 kb on - strand at 6327.651 kb on - strand at 6327.805 kb on + strand at 6327.805 kb on + strand at 6327.806 kb on - strand at 6327.841 kb on + strand, within AO353_29125 at 6327.841 kb on + strand, within AO353_29125 at 6327.841 kb on + strand, within AO353_29125 at 6327.841 kb on + strand, within AO353_29125 at 6327.842 kb on - strand, within AO353_29125 at 6327.842 kb on - strand, within AO353_29125 at 6327.842 kb on - strand, within AO353_29125 at 6327.842 kb on - strand, within AO353_29125 at 6327.842 kb on - strand, within AO353_29125 at 6327.997 kb on + strand, within AO353_29125 at 6327.998 kb on - strand, within AO353_29125 at 6327.998 kb on - strand, within AO353_29125 at 6327.998 kb on - strand, within AO353_29125 at 6328.027 kb on + strand, within AO353_29125 at 6328.027 kb on + strand, within AO353_29125 at 6328.028 kb on - strand, within AO353_29125 at 6328.028 kb on - strand, within AO353_29125 at 6328.028 kb on - strand, within AO353_29125 at 6328.028 kb on - strand, within AO353_29125 at 6328.028 kb on - strand, within AO353_29125 at 6328.028 kb on - strand, within AO353_29125 at 6328.092 kb on + strand, within AO353_29125 at 6328.106 kb on - strand, within AO353_29125 at 6328.312 kb on + strand, within AO353_29125 at 6328.534 kb on + strand, within AO353_29125 at 6328.534 kb on + strand, within AO353_29125 at 6328.534 kb on + strand, within AO353_29125 at 6328.534 kb on + strand, within AO353_29125 at 6328.535 kb on - strand, within AO353_29125 at 6328.535 kb on - strand, within AO353_29125 at 6328.535 kb on - strand, within AO353_29125 at 6328.535 kb on - strand, within AO353_29125 at 6328.535 kb on - strand, within AO353_29125 at 6328.550 kb on + strand, within AO353_29125 at 6328.550 kb on + strand, within AO353_29125 at 6328.551 kb on - strand, within AO353_29125 at 6328.551 kb on - strand, within AO353_29125 at 6328.551 kb on - strand, within AO353_29125 at 6328.551 kb on - strand, within AO353_29125 at 6328.551 kb on - strand, within AO353_29125 at 6328.613 kb on - strand, within AO353_29125 at 6328.888 kb on + strand at 6328.888 kb on + strand at 6328.888 kb on + strand at 6328.889 kb on - strand at 6328.889 kb on - strand at 6328.889 kb on - strand at 6328.889 kb on - strand at 6328.889 kb on - strand at 6328.889 kb on - strand at 6328.890 kb on + strand at 6328.890 kb on + strand at 6328.891 kb on - strand at 6328.891 kb on - strand at 6329.034 kb on + strand, within AO353_29130 at 6329.034 kb on + strand, within AO353_29130 at 6329.034 kb on + strand, within AO353_29130 at 6329.034 kb on + strand, within AO353_29130 at 6329.034 kb on + strand, within AO353_29130 at 6329.034 kb on + strand, within AO353_29130 at 6329.035 kb on - strand, within AO353_29130 at 6329.035 kb on - strand, within AO353_29130 at 6329.035 kb on - strand, within AO353_29130 at 6329.035 kb on - strand, within AO353_29130 at 6329.035 kb on - strand, within AO353_29130 at 6329.035 kb on - strand, within AO353_29130 at 6329.035 kb on - strand, within AO353_29130 at 6329.035 kb on - strand, within AO353_29130 at 6329.035 kb on - strand, within AO353_29130 at 6329.035 kb on - strand, within AO353_29130 at 6329.040 kb on + strand, within AO353_29130 at 6329.041 kb on - strand, within AO353_29130 at 6329.041 kb on - strand, within AO353_29130 at 6329.041 kb on - strand, within AO353_29130 at 6329.041 kb on - strand, within AO353_29130 at 6329.175 kb on + strand, within AO353_29130 at 6329.175 kb on + strand, within AO353_29130 at 6329.175 kb on + strand, within AO353_29130 at 6329.175 kb on - strand, within AO353_29130 at 6329.176 kb on - strand, within AO353_29130 at 6329.176 kb on - strand, within AO353_29130 at 6329.176 kb on - strand, within AO353_29130 at 6329.176 kb on - strand, within AO353_29130 at 6329.283 kb on + strand, within AO353_29130 at 6329.284 kb on - strand at 6329.284 kb on - strand, within AO353_29130 at 6329.589 kb on + strand, within AO353_29130 at 6329.709 kb on + strand at 6329.709 kb on + strand at 6329.709 kb on + strand at 6329.709 kb on + strand at 6329.709 kb on + strand at 6329.709 kb on + strand at 6329.709 kb on + strand at 6329.709 kb on + strand at 6329.709 kb on + strand at 6329.710 kb on - strand at 6329.710 kb on - strand at 6329.710 kb on - strand at 6329.710 kb on - strand at 6329.710 kb on - strand at 6329.710 kb on - strand at 6329.710 kb on - strand at 6329.763 kb on + strand at 6329.763 kb on + strand at 6329.764 kb on - strand at 6329.764 kb on - strand at 6329.784 kb on + strand at 6329.784 kb on + strand at 6329.784 kb on + strand at 6329.784 kb on + strand at 6329.784 kb on + strand at 6329.784 kb on + strand at 6329.784 kb on + strand at 6329.785 kb on - strand at 6329.785 kb on - strand at 6329.785 kb on - strand at 6329.811 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml remove 6,326,717 + AO353_29115 0.63 -0.3 6,326,717 + AO353_29115 0.63 +0.4 6,326,717 + AO353_29115 0.63 -0.3 6,326,717 + AO353_29115 0.63 +1.3 6,326,717 + AO353_29115 0.63 +0.7 6,326,717 + AO353_29115 0.63 +1.5 6,326,717 + AO353_29115 0.63 -0.3 6,326,717 + AO353_29115 0.63 +0.8 6,326,717 + AO353_29115 0.63 +0.4 6,326,717 + AO353_29115 0.63 +0.2 6,326,717 + AO353_29115 0.63 -0.3 6,326,718 - AO353_29115 0.63 +1.3 6,326,718 - AO353_29115 0.63 +0.1 6,326,718 - AO353_29115 0.63 +0.7 6,326,718 - AO353_29115 0.63 +1.0 6,326,751 - AO353_29115 0.71 +0.3 6,326,881 - -0.9 6,326,916 + +0.7 6,326,916 + +0.8 6,326,917 - -1.3 6,327,267 - AO353_29120 0.34 -0.3 6,327,418 - AO353_29120 0.56 +2.3 6,327,651 - -1.9 6,327,651 - -2.3 6,327,651 - -0.3 6,327,805 + -1.1 6,327,805 + +0.3 6,327,806 - +0.4 6,327,841 + AO353_29125 0.11 -0.3 6,327,841 + AO353_29125 0.11 -1.9 6,327,841 + AO353_29125 0.11 +0.7 6,327,841 + AO353_29125 0.11 +0.1 6,327,842 - AO353_29125 0.11 +0.2 6,327,842 - AO353_29125 0.11 +0.7 6,327,842 - AO353_29125 0.11 +0.3 6,327,842 - AO353_29125 0.11 +0.9 6,327,842 - AO353_29125 0.11 +0.4 6,327,997 + AO353_29125 0.25 -1.9 6,327,998 - AO353_29125 0.25 -1.1 6,327,998 - AO353_29125 0.25 -0.6 6,327,998 - AO353_29125 0.25 +0.0 6,328,027 + AO353_29125 0.27 +0.1 6,328,027 + AO353_29125 0.27 +1.7 6,328,028 - AO353_29125 0.28 -3.5 6,328,028 - AO353_29125 0.28 -1.3 6,328,028 - AO353_29125 0.28 -1.3 6,328,028 - AO353_29125 0.28 +0.1 6,328,028 - AO353_29125 0.28 +0.7 6,328,028 - AO353_29125 0.28 -1.9 6,328,092 + AO353_29125 0.33 -1.6 6,328,106 - AO353_29125 0.34 -0.3 6,328,312 + AO353_29125 0.52 -0.3 6,328,534 + AO353_29125 0.72 -1.3 6,328,534 + AO353_29125 0.72 -0.5 6,328,534 + AO353_29125 0.72 -0.6 6,328,534 + AO353_29125 0.72 -0.3 6,328,535 - AO353_29125 0.72 -0.6 6,328,535 - AO353_29125 0.72 -2.3 6,328,535 - AO353_29125 0.72 +2.3 6,328,535 - AO353_29125 0.72 +0.1 6,328,535 - AO353_29125 0.72 +1.2 6,328,550 + AO353_29125 0.73 -1.6 6,328,550 + AO353_29125 0.73 -0.1 6,328,551 - AO353_29125 0.73 -1.9 6,328,551 - AO353_29125 0.73 +0.7 6,328,551 - AO353_29125 0.73 -1.1 6,328,551 - AO353_29125 0.73 +0.3 6,328,551 - AO353_29125 0.73 +0.7 6,328,613 - AO353_29125 0.78 -0.8 6,328,888 + +0.3 6,328,888 + +0.9 6,328,888 + -0.9 6,328,889 - -0.6 6,328,889 - -0.9 6,328,889 - +2.5 6,328,889 - +0.9 6,328,889 - -1.3 6,328,889 - -0.3 6,328,890 + +0.3 6,328,890 + -1.1 6,328,891 - -1.6 6,328,891 - +1.1 6,329,034 + AO353_29130 0.17 -0.6 6,329,034 + AO353_29130 0.17 -0.3 6,329,034 + AO353_29130 0.17 -0.6 6,329,034 + AO353_29130 0.17 +1.0 6,329,034 + AO353_29130 0.17 +0.9 6,329,034 + AO353_29130 0.17 -3.1 6,329,035 - AO353_29130 0.17 +0.7 6,329,035 - AO353_29130 0.17 -2.3 6,329,035 - AO353_29130 0.17 +0.2 6,329,035 - AO353_29130 0.17 -1.2 6,329,035 - AO353_29130 0.17 -1.1 6,329,035 - AO353_29130 0.17 -0.5 6,329,035 - AO353_29130 0.17 -0.5 6,329,035 - AO353_29130 0.17 -2.6 6,329,035 - AO353_29130 0.17 -0.3 6,329,035 - AO353_29130 0.17 +0.3 6,329,040 + AO353_29130 0.17 +0.3 6,329,041 - AO353_29130 0.17 +0.4 6,329,041 - AO353_29130 0.17 +1.1 6,329,041 - AO353_29130 0.17 +0.5 6,329,041 - AO353_29130 0.17 +1.3 6,329,175 + AO353_29130 0.32 +0.7 6,329,175 + AO353_29130 0.32 -0.3 6,329,175 + AO353_29130 0.32 +2.0 6,329,175 - AO353_29130 0.32 +0.4 6,329,176 - AO353_29130 0.32 +0.1 6,329,176 - AO353_29130 0.32 -0.9 6,329,176 - AO353_29130 0.32 +1.0 6,329,176 - AO353_29130 0.32 -0.9 6,329,283 + AO353_29130 0.44 +0.4 6,329,284 - +1.3 6,329,284 - AO353_29130 0.44 +0.1 6,329,589 + AO353_29130 0.77 -0.2 6,329,709 + -1.9 6,329,709 + -1.1 6,329,709 + -0.3 6,329,709 + +1.0 6,329,709 + +1.0 6,329,709 + +0.7 6,329,709 + +2.7 6,329,709 + -1.1 6,329,709 + +1.3 6,329,710 - -2.6 6,329,710 - -0.7 6,329,710 - +0.5 6,329,710 - -1.3 6,329,710 - +1.3 6,329,710 - +0.7 6,329,710 - -1.3 6,329,763 + -0.2 6,329,763 + +0.8 6,329,764 - -0.1 6,329,764 - -0.6 6,329,784 + +1.7 6,329,784 + -0.8 6,329,784 + -1.3 6,329,784 + +1.3 6,329,784 + +1.0 6,329,784 + +0.3 6,329,784 + -2.3 6,329,785 - -0.6 6,329,785 - -1.9 6,329,785 - +0.7 6,329,811 + +0.4
Or see this region's nucleotide sequence