Experiment: Thallium(I) acetate 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_27675 and AO353_27680 are separated by 29 nucleotides AO353_27680 and AO353_27685 are separated by 217 nucleotides AO353_27685 and AO353_27690 are separated by 80 nucleotides
AO353_27675: AO353_27675 - ATP-dependent Clp protease ATP-binding subunit ClpA, at 6,031,673 to 6,033,943
_27675
AO353_27680: AO353_27680 - ATP-dependent Clp protease adaptor ClpS, at 6,033,973 to 6,034,335
_27680
AO353_27685: AO353_27685 - cold-shock protein, at 6,034,553 to 6,034,822
_27685
AO353_27690: AO353_27690 - isocitrate dehydrogenase, at 6,034,903 to 6,036,159
_27690
Position (kb)
6031
6032
6033
6034 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 6030.767 kb on + strand at 6030.767 kb on + strand at 6030.768 kb on - strand at 6030.768 kb on - strand at 6030.768 kb on - strand at 6030.768 kb on - strand at 6030.768 kb on - strand at 6030.768 kb on - strand at 6030.768 kb on - strand at 6030.768 kb on - strand at 6030.868 kb on + strand at 6030.868 kb on + strand at 6030.869 kb on - strand at 6030.869 kb on - strand at 6030.877 kb on + strand at 6030.877 kb on + strand at 6030.878 kb on - strand at 6030.878 kb on - strand at 6030.878 kb on - strand at 6030.945 kb on - strand at 6031.012 kb on + strand at 6031.012 kb on + strand at 6031.012 kb on + strand at 6031.012 kb on + strand at 6031.012 kb on + strand at 6031.012 kb on + strand at 6031.012 kb on + strand at 6031.012 kb on + strand at 6031.012 kb on + strand at 6031.013 kb on - strand at 6031.013 kb on - strand at 6031.081 kb on + strand at 6031.081 kb on + strand at 6031.081 kb on + strand at 6031.082 kb on - strand at 6031.082 kb on - strand at 6031.082 kb on - strand at 6031.154 kb on + strand at 6031.154 kb on + strand at 6031.154 kb on + strand at 6031.154 kb on + strand at 6031.155 kb on - strand at 6031.155 kb on - strand at 6031.155 kb on - strand at 6031.155 kb on - strand at 6031.155 kb on - strand at 6031.584 kb on + strand at 6031.584 kb on + strand at 6031.584 kb on + strand at 6031.584 kb on + strand at 6031.584 kb on + strand at 6031.584 kb on + strand at 6031.584 kb on + strand at 6031.584 kb on + strand at 6031.653 kb on + strand at 6031.653 kb on + strand at 6031.654 kb on - strand at 6031.690 kb on + strand at 6031.690 kb on + strand at 6031.690 kb on + strand at 6031.736 kb on + strand at 6031.736 kb on + strand at 6031.736 kb on + strand at 6031.736 kb on + strand at 6031.737 kb on - strand at 6031.849 kb on - strand at 6031.898 kb on + strand at 6031.899 kb on - strand at 6032.083 kb on + strand, within AO353_27675 at 6032.084 kb on - strand, within AO353_27675 at 6032.084 kb on - strand, within AO353_27675 at 6032.313 kb on + strand, within AO353_27675 at 6032.361 kb on + strand, within AO353_27675 at 6032.362 kb on - strand, within AO353_27675 at 6032.362 kb on - strand, within AO353_27675 at 6032.582 kb on - strand, within AO353_27675 at 6032.709 kb on + strand, within AO353_27675 at 6032.710 kb on - strand, within AO353_27675 at 6032.769 kb on + strand, within AO353_27675 at 6032.814 kb on + strand, within AO353_27675 at 6032.815 kb on - strand, within AO353_27675 at 6032.815 kb on - strand, within AO353_27675 at 6033.062 kb on - strand, within AO353_27675 at 6033.157 kb on - strand, within AO353_27675 at 6033.196 kb on - strand, within AO353_27675 at 6033.205 kb on + strand, within AO353_27675 at 6033.417 kb on + strand, within AO353_27675 at 6033.417 kb on + strand, within AO353_27675 at 6033.417 kb on + strand, within AO353_27675 at 6033.417 kb on + strand, within AO353_27675 at 6033.417 kb on + strand, within AO353_27675 at 6033.417 kb on + strand, within AO353_27675 at 6033.418 kb on - strand, within AO353_27675 at 6033.472 kb on + strand, within AO353_27675 at 6033.472 kb on + strand, within AO353_27675 at 6033.472 kb on + strand, within AO353_27675 at 6033.473 kb on - strand, within AO353_27675 at 6033.473 kb on - strand, within AO353_27675 at 6033.473 kb on - strand, within AO353_27675 at 6033.534 kb on + strand, within AO353_27675 at 6033.534 kb on + strand, within AO353_27675 at 6033.535 kb on - strand, within AO353_27675 at 6033.535 kb on - strand, within AO353_27675 at 6033.535 kb on - strand, within AO353_27675 at 6033.535 kb on - strand, within AO353_27675 at 6033.635 kb on + strand, within AO353_27675 at 6033.636 kb on - strand, within AO353_27675 at 6033.660 kb on - strand, within AO353_27675 at 6033.660 kb on - strand, within AO353_27675 at 6033.660 kb on - strand, within AO353_27675 at 6033.683 kb on + strand, within AO353_27675 at 6033.683 kb on + strand, within AO353_27675 at 6033.684 kb on - strand, within AO353_27675 at 6033.684 kb on - strand, within AO353_27675 at 6033.684 kb on - strand, within AO353_27675 at 6033.943 kb on + strand at 6033.943 kb on + strand at 6033.943 kb on + strand at 6033.943 kb on + strand at 6033.944 kb on - strand at 6033.944 kb on - strand at 6033.944 kb on - strand at 6033.944 kb on - strand at 6033.944 kb on - strand at 6033.944 kb on - strand at 6033.944 kb on - strand at 6033.956 kb on + strand at 6034.026 kb on - strand, within AO353_27680 at 6034.081 kb on + strand, within AO353_27680 at 6034.081 kb on + strand, within AO353_27680 at 6034.081 kb on + strand, within AO353_27680 at 6034.081 kb on + strand, within AO353_27680 at 6034.082 kb on - strand, within AO353_27680 at 6034.082 kb on - strand, within AO353_27680 at 6034.082 kb on - strand, within AO353_27680 at 6034.099 kb on - strand, within AO353_27680 at 6034.144 kb on - strand, within AO353_27680 at 6034.187 kb on + strand, within AO353_27680 at 6034.188 kb on - strand, within AO353_27680 at 6034.188 kb on - strand, within AO353_27680 at 6034.215 kb on - strand, within AO353_27680 at 6034.215 kb on - strand, within AO353_27680 at 6034.215 kb on - strand, within AO353_27680 at 6034.215 kb on - strand, within AO353_27680 at 6034.215 kb on - strand, within AO353_27680 at 6034.253 kb on - strand, within AO353_27680 at 6034.253 kb on - strand, within AO353_27680 at 6034.253 kb on - strand, within AO353_27680 at 6034.282 kb on + strand, within AO353_27680 at 6034.282 kb on + strand, within AO353_27680 at 6034.283 kb on - strand, within AO353_27680 at 6034.309 kb on + strand at 6034.309 kb on + strand at 6034.310 kb on - strand at 6034.326 kb on + strand at 6034.326 kb on + strand at 6034.327 kb on - strand at 6034.352 kb on + strand at 6034.353 kb on - strand at 6034.353 kb on - strand at 6034.366 kb on - strand at 6034.439 kb on + strand at 6034.439 kb on + strand at 6034.448 kb on + strand at 6034.448 kb on + strand at 6034.448 kb on + strand at 6034.511 kb on - strand at 6034.511 kb on - strand at 6034.521 kb on + strand at 6034.521 kb on + strand at 6034.521 kb on + strand at 6034.522 kb on - strand at 6034.522 kb on - strand at 6034.522 kb on - strand at 6034.522 kb on - strand at 6034.522 kb on - strand at 6034.552 kb on + strand at 6034.552 kb on + strand at 6034.660 kb on + strand, within AO353_27685 at 6034.661 kb on - strand, within AO353_27685 at 6034.673 kb on + strand, within AO353_27685 at 6034.674 kb on - strand, within AO353_27685 at 6034.674 kb on - strand at 6034.759 kb on + strand, within AO353_27685 at 6034.759 kb on + strand, within AO353_27685 at 6034.760 kb on - strand, within AO353_27685 at 6034.760 kb on - strand, within AO353_27685 at 6034.760 kb on - strand, within AO353_27685 at 6034.764 kb on + strand, within AO353_27685 at 6034.764 kb on + strand, within AO353_27685 at 6034.765 kb on - strand, within AO353_27685 at 6034.765 kb on - strand, within AO353_27685 at 6034.823 kb on + strand at 6034.836 kb on - strand at 6034.836 kb on - strand at 6034.844 kb on - strand at 6034.885 kb on + strand at 6034.886 kb on - strand at 6034.889 kb on + strand at 6034.889 kb on + strand at 6034.890 kb on - strand at 6034.904 kb on + strand at 6034.904 kb on + strand at 6034.904 kb on + strand at 6034.904 kb on + strand at 6034.904 kb on + strand at 6034.905 kb on - strand at 6034.905 kb on - strand at 6034.905 kb on - strand at 6034.905 kb on - strand at 6034.905 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml remove 6,030,767 + -0.8 6,030,767 + +0.7 6,030,768 - -0.3 6,030,768 - +1.0 6,030,768 - +0.5 6,030,768 - +1.8 6,030,768 - +1.7 6,030,768 - +0.4 6,030,768 - +0.7 6,030,768 - +1.7 6,030,868 + -1.3 6,030,868 + -0.3 6,030,869 - -1.0 6,030,869 - -0.9 6,030,877 + -1.6 6,030,877 + +1.3 6,030,878 - -1.3 6,030,878 - -0.9 6,030,878 - +0.1 6,030,945 - -1.3 6,031,012 + -0.3 6,031,012 + +2.8 6,031,012 + -0.3 6,031,012 + -2.6 6,031,012 + +2.5 6,031,012 + -1.9 6,031,012 + +0.3 6,031,012 + -0.3 6,031,012 + +0.4 6,031,013 - +0.5 6,031,013 - +0.5 6,031,081 + -0.3 6,031,081 + -0.3 6,031,081 + +0.3 6,031,082 - +1.7 6,031,082 - +0.3 6,031,082 - +0.3 6,031,154 + +0.7 6,031,154 + -0.3 6,031,154 + -1.3 6,031,154 + -2.3 6,031,155 - -1.9 6,031,155 - -0.9 6,031,155 - -0.3 6,031,155 - +0.4 6,031,155 - -0.3 6,031,584 + -1.9 6,031,584 + +1.1 6,031,584 + -0.1 6,031,584 + +0.7 6,031,584 + +0.2 6,031,584 + -1.6 6,031,584 + +1.2 6,031,584 + -1.0 6,031,653 + -0.9 6,031,653 + -0.3 6,031,654 - -0.9 6,031,690 + -0.3 6,031,690 + +1.2 6,031,690 + -1.3 6,031,736 + -1.0 6,031,736 + -2.1 6,031,736 + -3.3 6,031,736 + -0.3 6,031,737 - -1.7 6,031,849 - -1.9 6,031,898 + -0.9 6,031,899 - -1.7 6,032,083 + AO353_27675 0.18 -0.9 6,032,084 - AO353_27675 0.18 -1.3 6,032,084 - AO353_27675 0.18 -0.8 6,032,313 + AO353_27675 0.28 +2.2 6,032,361 + AO353_27675 0.30 -0.3 6,032,362 - AO353_27675 0.30 -1.3 6,032,362 - AO353_27675 0.30 -0.3 6,032,582 - AO353_27675 0.40 -0.3 6,032,709 + AO353_27675 0.46 -0.3 6,032,710 - AO353_27675 0.46 -0.7 6,032,769 + AO353_27675 0.48 -2.3 6,032,814 + AO353_27675 0.50 +0.2 6,032,815 - AO353_27675 0.50 -1.3 6,032,815 - AO353_27675 0.50 +0.4 6,033,062 - AO353_27675 0.61 -1.1 6,033,157 - AO353_27675 0.65 +0.1 6,033,196 - AO353_27675 0.67 +1.2 6,033,205 + AO353_27675 0.67 -2.3 6,033,417 + AO353_27675 0.77 -0.8 6,033,417 + AO353_27675 0.77 -1.3 6,033,417 + AO353_27675 0.77 -0.3 6,033,417 + AO353_27675 0.77 +1.4 6,033,417 + AO353_27675 0.77 -1.3 6,033,417 + AO353_27675 0.77 -0.3 6,033,418 - AO353_27675 0.77 -0.3 6,033,472 + AO353_27675 0.79 -0.2 6,033,472 + AO353_27675 0.79 -1.7 6,033,472 + AO353_27675 0.79 -0.8 6,033,473 - AO353_27675 0.79 -1.1 6,033,473 - AO353_27675 0.79 -0.3 6,033,473 - AO353_27675 0.79 -0.9 6,033,534 + AO353_27675 0.82 +0.2 6,033,534 + AO353_27675 0.82 -1.3 6,033,535 - AO353_27675 0.82 -2.3 6,033,535 - AO353_27675 0.82 -1.9 6,033,535 - AO353_27675 0.82 -1.1 6,033,535 - AO353_27675 0.82 +0.7 6,033,635 + AO353_27675 0.86 -0.3 6,033,636 - AO353_27675 0.86 -0.3 6,033,660 - AO353_27675 0.87 -0.9 6,033,660 - AO353_27675 0.87 -0.3 6,033,660 - AO353_27675 0.87 -1.3 6,033,683 + AO353_27675 0.89 -2.9 6,033,683 + AO353_27675 0.89 -2.3 6,033,684 - AO353_27675 0.89 -0.3 6,033,684 - AO353_27675 0.89 -0.3 6,033,684 - AO353_27675 0.89 +0.2 6,033,943 + +0.1 6,033,943 + -0.9 6,033,943 + -0.3 6,033,943 + -1.3 6,033,944 - -0.8 6,033,944 - -0.9 6,033,944 - -0.9 6,033,944 - -1.9 6,033,944 - -1.9 6,033,944 - -0.9 6,033,944 - -0.3 6,033,956 + +0.1 6,034,026 - AO353_27680 0.15 +0.2 6,034,081 + AO353_27680 0.30 -0.3 6,034,081 + AO353_27680 0.30 +0.1 6,034,081 + AO353_27680 0.30 -0.3 6,034,081 + AO353_27680 0.30 +0.7 6,034,082 - AO353_27680 0.30 +0.9 6,034,082 - AO353_27680 0.30 +0.4 6,034,082 - AO353_27680 0.30 +1.4 6,034,099 - AO353_27680 0.35 +2.0 6,034,144 - AO353_27680 0.47 +1.2 6,034,187 + AO353_27680 0.59 -2.3 6,034,188 - AO353_27680 0.59 -0.3 6,034,188 - AO353_27680 0.59 +1.2 6,034,215 - AO353_27680 0.67 +2.2 6,034,215 - AO353_27680 0.67 -0.3 6,034,215 - AO353_27680 0.67 +2.2 6,034,215 - AO353_27680 0.67 +2.0 6,034,215 - AO353_27680 0.67 +1.0 6,034,253 - AO353_27680 0.77 -1.3 6,034,253 - AO353_27680 0.77 +2.2 6,034,253 - AO353_27680 0.77 +0.1 6,034,282 + AO353_27680 0.85 -1.1 6,034,282 + AO353_27680 0.85 -1.3 6,034,283 - AO353_27680 0.85 +1.8 6,034,309 + -0.3 6,034,309 + +0.2 6,034,310 - -0.5 6,034,326 + -1.3 6,034,326 + -0.9 6,034,327 - +2.8 6,034,352 + -0.9 6,034,353 - -0.3 6,034,353 - +1.5 6,034,366 - +0.2 6,034,439 + -0.3 6,034,439 + -2.3 6,034,448 + -0.9 6,034,448 + +0.7 6,034,448 + +0.3 6,034,511 - -0.3 6,034,511 - -0.3 6,034,521 + +1.3 6,034,521 + -1.7 6,034,521 + -1.3 6,034,522 - -2.3 6,034,522 - +0.7 6,034,522 - +0.7 6,034,522 - +2.1 6,034,522 - -0.3 6,034,552 + -0.6 6,034,552 + +1.3 6,034,660 + AO353_27685 0.40 -1.6 6,034,661 - AO353_27685 0.40 +0.7 6,034,673 + AO353_27685 0.44 +0.4 6,034,674 - AO353_27685 0.45 +0.4 6,034,674 - -0.3 6,034,759 + AO353_27685 0.76 -3.1 6,034,759 + AO353_27685 0.76 -0.8 6,034,760 - AO353_27685 0.77 +0.1 6,034,760 - AO353_27685 0.77 +0.9 6,034,760 - AO353_27685 0.77 +1.1 6,034,764 + AO353_27685 0.78 -1.1 6,034,764 + AO353_27685 0.78 +0.7 6,034,765 - AO353_27685 0.79 +0.7 6,034,765 - AO353_27685 0.79 -0.2 6,034,823 + +0.7 6,034,836 - -0.3 6,034,836 - -0.7 6,034,844 - +0.9 6,034,885 + -0.9 6,034,886 - +1.3 6,034,889 + -0.9 6,034,889 + -0.1 6,034,890 - +0.7 6,034,904 + +2.3 6,034,904 + +0.3 6,034,904 + +1.3 6,034,904 + +0.7 6,034,904 + +0.7 6,034,905 - +0.4 6,034,905 - +0.6 6,034,905 - +1.3 6,034,905 - -1.6 6,034,905 - +0.1
Or see this region's nucleotide sequence