Experiment: Thallium(I) acetate 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_25605 and AO353_25610 overlap by 8 nucleotides AO353_25610 and AO353_25615 overlap by 4 nucleotides AO353_25615 and AO353_25620 are separated by 16 nucleotides
AO353_25605: AO353_25605 - polysaccharide deacetylase, at 5,648,202 to 5,649,050
_25605
AO353_25610: AO353_25610 - polysaccharide deacetylase, at 5,649,043 to 5,649,930
_25610
AO353_25615: AO353_25615 - 2-methylcitrate dehydratase, at 5,649,927 to 5,651,276
_25615
AO353_25620: AO353_25620 - MFS transporter, at 5,651,293 to 5,652,492
_25620
Position (kb)
5649
5650
5651
5652 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 5649.087 kb on - strand at 5649.103 kb on + strand at 5649.103 kb on + strand at 5649.103 kb on + strand at 5649.103 kb on + strand at 5649.104 kb on - strand at 5649.104 kb on - strand at 5649.104 kb on - strand at 5649.104 kb on - strand at 5649.113 kb on + strand at 5649.113 kb on + strand at 5649.113 kb on + strand at 5649.114 kb on - strand at 5649.114 kb on - strand at 5649.331 kb on + strand, within AO353_25610 at 5649.346 kb on + strand, within AO353_25610 at 5649.346 kb on + strand, within AO353_25610 at 5649.346 kb on + strand, within AO353_25610 at 5649.347 kb on - strand, within AO353_25610 at 5649.347 kb on - strand, within AO353_25610 at 5649.347 kb on - strand, within AO353_25610 at 5649.580 kb on + strand, within AO353_25610 at 5649.580 kb on + strand, within AO353_25610 at 5649.601 kb on + strand, within AO353_25610 at 5649.601 kb on + strand, within AO353_25610 at 5649.601 kb on + strand, within AO353_25610 at 5649.602 kb on - strand, within AO353_25610 at 5649.658 kb on + strand, within AO353_25610 at 5649.658 kb on + strand, within AO353_25610 at 5649.658 kb on + strand, within AO353_25610 at 5649.659 kb on - strand, within AO353_25610 at 5649.659 kb on - strand, within AO353_25610 at 5649.666 kb on + strand, within AO353_25610 at 5649.666 kb on + strand, within AO353_25610 at 5649.667 kb on - strand, within AO353_25610 at 5649.667 kb on - strand, within AO353_25610 at 5649.667 kb on - strand, within AO353_25610 at 5649.667 kb on - strand, within AO353_25610 at 5649.721 kb on + strand, within AO353_25610 at 5649.721 kb on + strand at 5649.721 kb on + strand, within AO353_25610 at 5649.721 kb on + strand, within AO353_25610 at 5649.721 kb on + strand, within AO353_25610 at 5649.721 kb on + strand, within AO353_25610 at 5649.721 kb on + strand, within AO353_25610 at 5649.721 kb on + strand, within AO353_25610 at 5649.722 kb on - strand, within AO353_25610 at 5649.722 kb on - strand, within AO353_25610 at 5649.898 kb on + strand at 5649.898 kb on + strand at 5649.919 kb on + strand at 5649.919 kb on + strand at 5649.920 kb on - strand at 5649.920 kb on - strand at 5649.920 kb on - strand at 5649.920 kb on - strand at 5649.920 kb on - strand at 5650.019 kb on + strand at 5650.020 kb on - strand at 5650.020 kb on - strand at 5650.020 kb on - strand at 5650.020 kb on - strand at 5650.020 kb on - strand at 5650.269 kb on - strand, within AO353_25615 at 5650.295 kb on + strand, within AO353_25615 at 5650.296 kb on - strand, within AO353_25615 at 5650.432 kb on + strand, within AO353_25615 at 5650.468 kb on + strand, within AO353_25615 at 5650.469 kb on - strand, within AO353_25615 at 5650.734 kb on + strand, within AO353_25615 at 5650.734 kb on + strand, within AO353_25615 at 5650.735 kb on - strand, within AO353_25615 at 5650.911 kb on + strand, within AO353_25615 at 5650.911 kb on + strand, within AO353_25615 at 5650.959 kb on + strand, within AO353_25615 at 5650.959 kb on + strand, within AO353_25615 at 5650.959 kb on + strand, within AO353_25615 at 5650.959 kb on + strand, within AO353_25615 at 5650.959 kb on + strand, within AO353_25615 at 5650.960 kb on - strand, within AO353_25615 at 5650.960 kb on - strand, within AO353_25615 at 5650.979 kb on + strand, within AO353_25615 at 5650.980 kb on - strand, within AO353_25615 at 5651.252 kb on + strand at 5651.253 kb on - strand at 5651.274 kb on + strand at 5651.299 kb on - strand at 5651.302 kb on + strand at 5651.302 kb on + strand at 5651.302 kb on + strand at 5651.303 kb on - strand at 5651.303 kb on - strand at 5651.474 kb on - strand, within AO353_25620 at 5651.474 kb on - strand, within AO353_25620 at 5651.482 kb on + strand, within AO353_25620 at 5651.482 kb on + strand, within AO353_25620 at 5651.482 kb on + strand, within AO353_25620 at 5651.578 kb on + strand, within AO353_25620 at 5651.578 kb on + strand, within AO353_25620 at 5651.702 kb on - strand, within AO353_25620 at 5651.704 kb on - strand, within AO353_25620 at 5651.974 kb on + strand, within AO353_25620 at 5651.975 kb on - strand, within AO353_25620 at 5651.986 kb on + strand, within AO353_25620 at 5651.986 kb on + strand, within AO353_25620 at 5651.987 kb on - strand, within AO353_25620 at 5651.987 kb on - strand, within AO353_25620 at 5652.077 kb on - strand, within AO353_25620 at 5652.236 kb on - strand, within AO353_25620
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml remove 5,649,087 - -0.5 5,649,103 + +0.0 5,649,103 + -1.1 5,649,103 + +0.2 5,649,103 + -1.3 5,649,104 - +0.5 5,649,104 - -1.5 5,649,104 - -1.8 5,649,104 - +0.7 5,649,113 + +0.5 5,649,113 + -1.5 5,649,113 + -2.1 5,649,114 - +0.5 5,649,114 - +1.7 5,649,331 + AO353_25610 0.32 -0.5 5,649,346 + AO353_25610 0.34 -1.2 5,649,346 + AO353_25610 0.34 +0.8 5,649,346 + AO353_25610 0.34 -0.5 5,649,347 - AO353_25610 0.34 +0.3 5,649,347 - AO353_25610 0.34 -2.5 5,649,347 - AO353_25610 0.34 -0.1 5,649,580 + AO353_25610 0.60 +1.1 5,649,580 + AO353_25610 0.60 -1.5 5,649,601 + AO353_25610 0.63 -0.5 5,649,601 + AO353_25610 0.63 -0.1 5,649,601 + AO353_25610 0.63 -2.1 5,649,602 - AO353_25610 0.63 -1.7 5,649,658 + AO353_25610 0.69 -2.8 5,649,658 + AO353_25610 0.69 +2.6 5,649,658 + AO353_25610 0.69 +1.8 5,649,659 - AO353_25610 0.69 -1.5 5,649,659 - AO353_25610 0.69 +1.8 5,649,666 + AO353_25610 0.70 -0.5 5,649,666 + AO353_25610 0.70 +1.1 5,649,667 - AO353_25610 0.70 -1.5 5,649,667 - AO353_25610 0.70 -0.2 5,649,667 - AO353_25610 0.70 -2.1 5,649,667 - AO353_25610 0.70 -0.9 5,649,721 + AO353_25610 0.76 +0.2 5,649,721 + -0.5 5,649,721 + AO353_25610 0.76 -0.5 5,649,721 + AO353_25610 0.76 -2.1 5,649,721 + AO353_25610 0.76 +0.1 5,649,721 + AO353_25610 0.76 -1.8 5,649,721 + AO353_25610 0.76 +2.1 5,649,721 + AO353_25610 0.76 -1.5 5,649,722 - AO353_25610 0.76 +1.1 5,649,722 - AO353_25610 0.76 -0.5 5,649,898 + +0.5 5,649,898 + -0.0 5,649,919 + +0.5 5,649,919 + +0.5 5,649,920 - +0.9 5,649,920 - +0.2 5,649,920 - +0.5 5,649,920 - +0.9 5,649,920 - -0.5 5,650,019 + -0.5 5,650,020 - +1.1 5,650,020 - -2.1 5,650,020 - -1.3 5,650,020 - +0.6 5,650,020 - -1.5 5,650,269 - AO353_25615 0.25 -0.5 5,650,295 + AO353_25615 0.27 -0.5 5,650,296 - AO353_25615 0.27 -0.5 5,650,432 + AO353_25615 0.37 -0.5 5,650,468 + AO353_25615 0.40 -2.5 5,650,469 - AO353_25615 0.40 +0.5 5,650,734 + AO353_25615 0.60 -0.1 5,650,734 + AO353_25615 0.60 -0.9 5,650,735 - AO353_25615 0.60 -0.5 5,650,911 + AO353_25615 0.73 -0.9 5,650,911 + AO353_25615 0.73 -1.5 5,650,959 + AO353_25615 0.76 -1.7 5,650,959 + AO353_25615 0.76 -0.2 5,650,959 + AO353_25615 0.76 -1.5 5,650,959 + AO353_25615 0.76 +0.1 5,650,959 + AO353_25615 0.76 +1.1 5,650,960 - AO353_25615 0.77 +0.2 5,650,960 - AO353_25615 0.77 -0.5 5,650,979 + AO353_25615 0.78 -1.8 5,650,980 - AO353_25615 0.78 -1.5 5,651,252 + -0.9 5,651,253 - -0.9 5,651,274 + -2.1 5,651,299 - +0.3 5,651,302 + +0.1 5,651,302 + +1.5 5,651,302 + -0.2 5,651,303 - -1.8 5,651,303 - +0.5 5,651,474 - AO353_25620 0.15 +0.7 5,651,474 - AO353_25620 0.15 -0.5 5,651,482 + AO353_25620 0.16 +1.9 5,651,482 + AO353_25620 0.16 -1.1 5,651,482 + AO353_25620 0.16 -1.2 5,651,578 + AO353_25620 0.24 +0.3 5,651,578 + AO353_25620 0.24 -0.5 5,651,702 - AO353_25620 0.34 +0.5 5,651,704 - AO353_25620 0.34 +1.8 5,651,974 + AO353_25620 0.57 -1.2 5,651,975 - AO353_25620 0.57 +2.1 5,651,986 + AO353_25620 0.58 +0.7 5,651,986 + AO353_25620 0.58 +0.7 5,651,987 - AO353_25620 0.58 +0.8 5,651,987 - AO353_25620 0.58 -0.5 5,652,077 - AO353_25620 0.65 +0.1 5,652,236 - AO353_25620 0.79 -0.0
Or see this region's nucleotide sequence