Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_24330

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_24325 and AO353_24330 are separated by 110 nucleotidesAO353_24330 and AO353_24335 are separated by 390 nucleotides AO353_24325: AO353_24325 - Fis family transcriptional regulator, at 5,350,362 to 5,351,675 _24325 AO353_24330: AO353_24330 - cystathionine beta-lyase, at 5,351,786 to 5,352,955 _24330 AO353_24335: AO353_24335 - L-asparagine permease, at 5,353,346 to 5,354,830 _24335 Position (kb) 5351 5352 5353Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5350.802 kb on + strand, within AO353_24325at 5350.803 kb on - strand, within AO353_24325at 5350.803 kb on - strand, within AO353_24325at 5350.987 kb on + strand, within AO353_24325at 5350.988 kb on - strand, within AO353_24325at 5351.083 kb on + strand, within AO353_24325at 5351.092 kb on + strand, within AO353_24325at 5351.092 kb on + strand, within AO353_24325at 5351.093 kb on - strand, within AO353_24325at 5351.093 kb on - strand, within AO353_24325at 5351.157 kb on - strand, within AO353_24325at 5351.220 kb on - strand, within AO353_24325at 5351.257 kb on - strand, within AO353_24325at 5351.396 kb on + strand, within AO353_24325at 5351.404 kb on - strand, within AO353_24325at 5351.506 kb on + strand, within AO353_24325at 5351.506 kb on + strand, within AO353_24325at 5351.576 kb on - strandat 5351.580 kb on - strandat 5351.756 kb on + strandat 5351.772 kb on - strandat 5352.062 kb on - strand, within AO353_24330at 5352.115 kb on - strand, within AO353_24330at 5352.175 kb on - strand, within AO353_24330at 5352.197 kb on + strand, within AO353_24330at 5352.340 kb on + strand, within AO353_24330at 5352.341 kb on - strand, within AO353_24330at 5352.341 kb on - strand, within AO353_24330at 5352.342 kb on + strand, within AO353_24330at 5352.342 kb on + strand, within AO353_24330at 5352.342 kb on + strand, within AO353_24330at 5352.343 kb on - strand, within AO353_24330at 5352.343 kb on - strand, within AO353_24330at 5352.343 kb on - strand, within AO353_24330at 5352.365 kb on + strand, within AO353_24330at 5352.365 kb on + strand, within AO353_24330at 5352.365 kb on + strand, within AO353_24330at 5352.428 kb on - strand, within AO353_24330at 5352.431 kb on + strand, within AO353_24330at 5352.431 kb on + strand, within AO353_24330at 5352.462 kb on - strand, within AO353_24330at 5352.479 kb on + strand, within AO353_24330at 5352.480 kb on - strand, within AO353_24330at 5352.513 kb on + strand, within AO353_24330at 5352.513 kb on + strand, within AO353_24330at 5352.514 kb on - strandat 5352.514 kb on - strand, within AO353_24330at 5352.524 kb on - strand, within AO353_24330at 5352.545 kb on + strand, within AO353_24330at 5352.546 kb on - strand, within AO353_24330at 5352.560 kb on + strand, within AO353_24330at 5352.560 kb on + strand, within AO353_24330at 5352.561 kb on - strand, within AO353_24330at 5352.561 kb on - strand, within AO353_24330at 5352.561 kb on - strand, within AO353_24330at 5352.573 kb on + strand, within AO353_24330at 5352.574 kb on - strand, within AO353_24330at 5352.636 kb on + strand, within AO353_24330at 5352.636 kb on + strand, within AO353_24330at 5352.637 kb on - strand, within AO353_24330at 5352.686 kb on + strand, within AO353_24330at 5352.686 kb on + strand, within AO353_24330at 5352.687 kb on - strand, within AO353_24330at 5352.697 kb on + strand, within AO353_24330at 5352.697 kb on + strand, within AO353_24330at 5352.697 kb on + strand, within AO353_24330at 5352.698 kb on - strand, within AO353_24330at 5352.698 kb on - strand, within AO353_24330at 5352.698 kb on - strand, within AO353_24330at 5352.698 kb on - strand, within AO353_24330at 5352.698 kb on - strand, within AO353_24330at 5352.801 kb on + strand, within AO353_24330at 5352.801 kb on + strand, within AO353_24330at 5352.801 kb on + strand, within AO353_24330at 5352.801 kb on + strand, within AO353_24330at 5352.802 kb on - strand, within AO353_24330at 5352.802 kb on - strand, within AO353_24330at 5352.802 kb on - strand, within AO353_24330at 5352.802 kb on - strand, within AO353_24330at 5352.802 kb on - strand, within AO353_24330at 5352.802 kb on - strand, within AO353_24330at 5352.806 kb on - strand, within AO353_24330at 5352.806 kb on - strand, within AO353_24330at 5352.806 kb on - strand, within AO353_24330at 5352.806 kb on - strand, within AO353_24330at 5352.841 kb on + strandat 5352.842 kb on - strandat 5352.877 kb on + strandat 5352.878 kb on - strandat 5352.878 kb on - strandat 5352.878 kb on - strandat 5352.878 kb on - strandat 5352.878 kb on - strandat 5352.926 kb on + strandat 5352.945 kb on + strandat 5352.992 kb on + strandat 5352.997 kb on - strandat 5352.999 kb on + strandat 5353.482 kb on + strandat 5353.498 kb on + strand, within AO353_24335at 5353.891 kb on - strand, within AO353_24335at 5353.906 kb on - strand, within AO353_24335

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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5,350,802 + AO353_24325 0.33 +1.1
5,350,803 - AO353_24325 0.34 +1.5
5,350,803 - AO353_24325 0.34 -0.1
5,350,987 + AO353_24325 0.48 -0.2
5,350,988 - AO353_24325 0.48 +1.9
5,351,083 + AO353_24325 0.55 -0.1
5,351,092 + AO353_24325 0.56 -1.1
5,351,092 + AO353_24325 0.56 +0.5
5,351,093 - AO353_24325 0.56 +0.1
5,351,093 - AO353_24325 0.56 -0.5
5,351,157 - AO353_24325 0.61 +0.9
5,351,220 - AO353_24325 0.65 +0.5
5,351,257 - AO353_24325 0.68 +0.3
5,351,396 + AO353_24325 0.79 -0.5
5,351,404 - AO353_24325 0.79 +0.7
5,351,506 + AO353_24325 0.87 -0.5
5,351,506 + AO353_24325 0.87 +0.2
5,351,576 - +0.1
5,351,580 - +2.5
5,351,756 + +0.9
5,351,772 - -0.3
5,352,062 - AO353_24330 0.24 +0.5
5,352,115 - AO353_24330 0.28 -2.8
5,352,175 - AO353_24330 0.33 -0.5
5,352,197 + AO353_24330 0.35 +0.5
5,352,340 + AO353_24330 0.47 +0.6
5,352,341 - AO353_24330 0.47 +0.5
5,352,341 - AO353_24330 0.47 +1.5
5,352,342 + AO353_24330 0.48 -0.2
5,352,342 + AO353_24330 0.48 -1.2
5,352,342 + AO353_24330 0.48 +1.5
5,352,343 - AO353_24330 0.48 -0.5
5,352,343 - AO353_24330 0.48 +0.7
5,352,343 - AO353_24330 0.48 +2.5
5,352,365 + AO353_24330 0.49 +0.7
5,352,365 + AO353_24330 0.49 -0.1
5,352,365 + AO353_24330 0.49 -0.1
5,352,428 - AO353_24330 0.55 -0.1
5,352,431 + AO353_24330 0.55 -0.5
5,352,431 + AO353_24330 0.55 -2.1
5,352,462 - AO353_24330 0.58 -0.5
5,352,479 + AO353_24330 0.59 -0.5
5,352,480 - AO353_24330 0.59 +0.3
5,352,513 + AO353_24330 0.62 -0.5
5,352,513 + AO353_24330 0.62 +0.4
5,352,514 - -1.5
5,352,514 - AO353_24330 0.62 +0.0
5,352,524 - AO353_24330 0.63 -0.7
5,352,545 + AO353_24330 0.65 -0.5
5,352,546 - AO353_24330 0.65 -1.5
5,352,560 + AO353_24330 0.66 +0.0
5,352,560 + AO353_24330 0.66 -0.5
5,352,561 - AO353_24330 0.66 -0.5
5,352,561 - AO353_24330 0.66 -0.5
5,352,561 - AO353_24330 0.66 -1.0
5,352,573 + AO353_24330 0.67 +0.8
5,352,574 - AO353_24330 0.67 -0.3
5,352,636 + AO353_24330 0.73 +0.5
5,352,636 + AO353_24330 0.73 +0.9
5,352,637 - AO353_24330 0.73 +0.1
5,352,686 + AO353_24330 0.77 -0.5
5,352,686 + AO353_24330 0.77 -0.1
5,352,687 - AO353_24330 0.77 -0.5
5,352,697 + AO353_24330 0.78 +0.5
5,352,697 + AO353_24330 0.78 +0.1
5,352,697 + AO353_24330 0.78 +0.4
5,352,698 - AO353_24330 0.78 +0.5
5,352,698 - AO353_24330 0.78 -2.8
5,352,698 - AO353_24330 0.78 -1.1
5,352,698 - AO353_24330 0.78 +2.3
5,352,698 - AO353_24330 0.78 -1.2
5,352,801 + AO353_24330 0.87 +1.5
5,352,801 + AO353_24330 0.87 -1.1
5,352,801 + AO353_24330 0.87 -0.5
5,352,801 + AO353_24330 0.87 -0.1
5,352,802 - AO353_24330 0.87 +2.4
5,352,802 - AO353_24330 0.87 +0.3
5,352,802 - AO353_24330 0.87 +1.5
5,352,802 - AO353_24330 0.87 -0.3
5,352,802 - AO353_24330 0.87 +0.5
5,352,802 - AO353_24330 0.87 +0.9
5,352,806 - AO353_24330 0.87 +2.6
5,352,806 - AO353_24330 0.87 -1.5
5,352,806 - AO353_24330 0.87 +1.3
5,352,806 - AO353_24330 0.87 +0.9
5,352,841 + -0.1
5,352,842 - -1.5
5,352,877 + -0.5
5,352,878 - +2.1
5,352,878 - +0.1
5,352,878 - +0.5
5,352,878 - +0.0
5,352,878 - -2.8
5,352,926 + +1.1
5,352,945 + -0.9
5,352,992 + -1.2
5,352,997 - +0.5
5,352,999 + -0.7
5,353,482 + +0.5
5,353,498 + AO353_24335 0.10 +0.5
5,353,891 - AO353_24335 0.37 -0.5
5,353,906 - AO353_24335 0.38 +0.3

Or see this region's nucleotide sequence