Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_22845

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_22840 and AO353_22845 are separated by 187 nucleotidesAO353_22845 and AO353_22850 are separated by 244 nucleotidesAO353_22850 and AO353_22855 are separated by 191 nucleotides AO353_22840: AO353_22840 - DNA-binding protein, at 5,007,068 to 5,008,501 _22840 AO353_22845: AO353_22845 - GNAT family acetyltransferase, at 5,008,689 to 5,009,210 _22845 AO353_22850: AO353_22850 - hypothetical protein, at 5,009,455 to 5,009,949 _22850 AO353_22855: AO353_22855 - hypothetical protein, at 5,010,141 to 5,010,362 _22855 Position (kb) 5008 5009 5010Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5007.747 kb on + strand, within AO353_22840at 5007.747 kb on + strand, within AO353_22840at 5007.747 kb on + strand, within AO353_22840at 5007.747 kb on + strand, within AO353_22840at 5007.747 kb on + strand, within AO353_22840at 5007.747 kb on + strand, within AO353_22840at 5007.747 kb on + strand, within AO353_22840at 5007.747 kb on + strand, within AO353_22840at 5007.747 kb on + strand, within AO353_22840at 5007.747 kb on + strand, within AO353_22840at 5007.747 kb on + strand, within AO353_22840at 5007.748 kb on - strand, within AO353_22840at 5007.748 kb on - strand, within AO353_22840at 5007.748 kb on - strand, within AO353_22840at 5007.903 kb on - strand, within AO353_22840at 5008.146 kb on + strand, within AO353_22840at 5008.146 kb on + strand, within AO353_22840at 5008.278 kb on + strand, within AO353_22840at 5008.278 kb on + strand, within AO353_22840at 5008.278 kb on + strand, within AO353_22840at 5008.278 kb on + strand, within AO353_22840at 5008.278 kb on + strand, within AO353_22840at 5008.279 kb on - strand, within AO353_22840at 5008.279 kb on - strand, within AO353_22840at 5008.279 kb on - strand, within AO353_22840at 5008.279 kb on - strand, within AO353_22840at 5008.279 kb on - strand, within AO353_22840at 5008.317 kb on + strand, within AO353_22840at 5008.318 kb on - strand, within AO353_22840at 5008.318 kb on - strand, within AO353_22840at 5008.332 kb on + strand, within AO353_22840at 5008.333 kb on - strand, within AO353_22840at 5008.333 kb on - strand, within AO353_22840at 5008.333 kb on - strand, within AO353_22840at 5008.333 kb on - strand, within AO353_22840at 5008.333 kb on - strand, within AO353_22840at 5008.427 kb on + strandat 5008.428 kb on - strandat 5008.428 kb on - strandat 5008.428 kb on - strandat 5008.449 kb on + strandat 5008.530 kb on + strandat 5008.530 kb on + strandat 5008.531 kb on - strandat 5008.650 kb on + strandat 5008.651 kb on - strandat 5008.668 kb on + strandat 5008.668 kb on + strandat 5008.668 kb on + strandat 5008.668 kb on + strandat 5008.668 kb on + strandat 5008.669 kb on - strandat 5008.724 kb on + strandat 5008.761 kb on + strand, within AO353_22845at 5008.762 kb on - strand, within AO353_22845at 5009.064 kb on + strand, within AO353_22845at 5009.064 kb on + strand, within AO353_22845at 5009.064 kb on + strand, within AO353_22845at 5009.064 kb on + strand, within AO353_22845at 5009.064 kb on + strand, within AO353_22845at 5009.065 kb on - strand, within AO353_22845at 5009.065 kb on - strand, within AO353_22845at 5009.065 kb on - strand, within AO353_22845at 5009.065 kb on - strand, within AO353_22845at 5009.065 kb on - strand, within AO353_22845at 5009.095 kb on - strand, within AO353_22845at 5009.137 kb on - strand, within AO353_22845at 5009.137 kb on - strand, within AO353_22845at 5009.276 kb on - strandat 5009.305 kb on - strandat 5009.305 kb on - strandat 5009.305 kb on - strandat 5009.305 kb on - strandat 5009.389 kb on - strandat 5009.428 kb on + strandat 5009.465 kb on + strandat 5009.466 kb on - strandat 5009.466 kb on - strandat 5009.466 kb on - strandat 5009.466 kb on - strandat 5009.466 kb on - strandat 5009.466 kb on - strandat 5009.494 kb on + strandat 5009.494 kb on + strandat 5009.641 kb on + strand, within AO353_22850at 5009.641 kb on + strand, within AO353_22850at 5009.641 kb on + strand, within AO353_22850at 5009.641 kb on + strand, within AO353_22850at 5009.641 kb on + strand, within AO353_22850at 5009.641 kb on + strand, within AO353_22850at 5009.641 kb on + strand, within AO353_22850at 5009.641 kb on + strand, within AO353_22850at 5009.642 kb on - strand, within AO353_22850at 5009.642 kb on - strand, within AO353_22850at 5009.642 kb on - strand, within AO353_22850at 5010.033 kb on + strandat 5010.033 kb on + strandat 5010.033 kb on + strandat 5010.034 kb on - strandat 5010.034 kb on - strandat 5010.066 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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5,007,747 + AO353_22840 0.47 +0.9
5,007,747 + AO353_22840 0.47 +1.6
5,007,747 + AO353_22840 0.47 +1.2
5,007,747 + AO353_22840 0.47 +0.6
5,007,747 + AO353_22840 0.47 +0.6
5,007,747 + AO353_22840 0.47 +1.6
5,007,747 + AO353_22840 0.47 -1.0
5,007,747 + AO353_22840 0.47 -0.8
5,007,747 + AO353_22840 0.47 +2.1
5,007,747 + AO353_22840 0.47 -0.4
5,007,747 + AO353_22840 0.47 +1.4
5,007,748 - AO353_22840 0.47 -1.1
5,007,748 - AO353_22840 0.47 +1.2
5,007,748 - AO353_22840 0.47 -0.2
5,007,903 - AO353_22840 0.58 +0.6
5,008,146 + AO353_22840 0.75 +0.6
5,008,146 + AO353_22840 0.75 -0.7
5,008,278 + AO353_22840 0.84 -0.1
5,008,278 + AO353_22840 0.84 -2.0
5,008,278 + AO353_22840 0.84 -0.4
5,008,278 + AO353_22840 0.84 -1.0
5,008,278 + AO353_22840 0.84 +1.6
5,008,279 - AO353_22840 0.84 -2.2
5,008,279 - AO353_22840 0.84 -0.2
5,008,279 - AO353_22840 0.84 +3.4
5,008,279 - AO353_22840 0.84 +0.3
5,008,279 - AO353_22840 0.84 -0.8
5,008,317 + AO353_22840 0.87 -0.8
5,008,318 - AO353_22840 0.87 -1.4
5,008,318 - AO353_22840 0.87 +1.5
5,008,332 + AO353_22840 0.88 -1.4
5,008,333 - AO353_22840 0.88 -1.4
5,008,333 - AO353_22840 0.88 -1.0
5,008,333 - AO353_22840 0.88 -1.4
5,008,333 - AO353_22840 0.88 +1.2
5,008,333 - AO353_22840 0.88 +0.8
5,008,427 + -1.0
5,008,428 - +1.2
5,008,428 - -1.1
5,008,428 - -1.0
5,008,449 + +0.2
5,008,530 + -1.2
5,008,530 + -0.4
5,008,531 - -0.4
5,008,650 + +0.8
5,008,651 - -1.4
5,008,668 + -0.1
5,008,668 + -0.4
5,008,668 + -1.0
5,008,668 + -1.4
5,008,668 + -2.7
5,008,669 - +1.2
5,008,724 + +0.1
5,008,761 + AO353_22845 0.14 -0.4
5,008,762 - AO353_22845 0.14 -2.0
5,009,064 + AO353_22845 0.72 +0.6
5,009,064 + AO353_22845 0.72 +3.1
5,009,064 + AO353_22845 0.72 -0.7
5,009,064 + AO353_22845 0.72 -2.0
5,009,064 + AO353_22845 0.72 -1.4
5,009,065 - AO353_22845 0.72 -1.0
5,009,065 - AO353_22845 0.72 -0.9
5,009,065 - AO353_22845 0.72 +0.9
5,009,065 - AO353_22845 0.72 +0.9
5,009,065 - AO353_22845 0.72 +0.7
5,009,095 - AO353_22845 0.78 -1.4
5,009,137 - AO353_22845 0.86 -1.0
5,009,137 - AO353_22845 0.86 -2.7
5,009,276 - -0.4
5,009,305 - +0.2
5,009,305 - +1.0
5,009,305 - +1.2
5,009,305 - -2.0
5,009,389 - +0.6
5,009,428 + +1.2
5,009,465 + +0.2
5,009,466 - -0.1
5,009,466 - +0.2
5,009,466 - +0.6
5,009,466 - +0.9
5,009,466 - -0.4
5,009,466 - +0.6
5,009,494 + -0.4
5,009,494 + +0.5
5,009,641 + AO353_22850 0.38 +0.4
5,009,641 + AO353_22850 0.38 +0.1
5,009,641 + AO353_22850 0.38 +1.6
5,009,641 + AO353_22850 0.38 -1.4
5,009,641 + AO353_22850 0.38 -0.8
5,009,641 + AO353_22850 0.38 +0.1
5,009,641 + AO353_22850 0.38 -1.1
5,009,641 + AO353_22850 0.38 +0.4
5,009,642 - AO353_22850 0.38 -0.4
5,009,642 - AO353_22850 0.38 +1.5
5,009,642 - AO353_22850 0.38 -0.8
5,010,033 + +0.3
5,010,033 + -1.4
5,010,033 + +0.6
5,010,034 - +0.3
5,010,034 - +1.5
5,010,066 - +1.8

Or see this region's nucleotide sequence