Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_21480

Experiment: Thallium(I) acetate 0.008 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_21475 and AO353_21480 overlap by 6 nucleotidesAO353_21480 and AO353_21485 are separated by 715 nucleotides AO353_21475: AO353_21475 - hypothetical protein, at 4,699,013 to 4,700,041 _21475 AO353_21480: AO353_21480 - Cro/Cl family transcriptional regulator, at 4,700,036 to 4,700,599 _21480 AO353_21485: AO353_21485 - pyridine nucleotide-disulfide oxidoreductase, at 4,701,315 to 4,702,742 _21485 Position (kb) 4700 4701Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7at 4699.410 kb on + strand, within AO353_21475at 4699.410 kb on + strand, within AO353_21475at 4699.410 kb on + strand, within AO353_21475at 4699.410 kb on + strand, within AO353_21475at 4699.410 kb on + strand, within AO353_21475at 4699.410 kb on + strand, within AO353_21475at 4699.410 kb on + strand, within AO353_21475at 4699.410 kb on + strand, within AO353_21475at 4699.410 kb on + strandat 4699.411 kb on - strand, within AO353_21475at 4699.411 kb on - strand, within AO353_21475at 4699.411 kb on - strand, within AO353_21475at 4699.411 kb on - strand, within AO353_21475at 4699.550 kb on - strand, within AO353_21475at 4699.614 kb on + strand, within AO353_21475at 4699.614 kb on + strand, within AO353_21475at 4699.615 kb on - strand, within AO353_21475at 4699.615 kb on - strand, within AO353_21475at 4699.774 kb on + strand, within AO353_21475at 4699.774 kb on + strand, within AO353_21475at 4699.774 kb on + strand, within AO353_21475at 4699.775 kb on - strand, within AO353_21475at 4699.936 kb on + strand, within AO353_21475at 4699.936 kb on + strand, within AO353_21475at 4699.936 kb on + strand, within AO353_21475at 4699.936 kb on + strand, within AO353_21475at 4699.936 kb on + strand, within AO353_21475at 4699.936 kb on + strand, within AO353_21475at 4699.937 kb on - strand, within AO353_21475at 4699.937 kb on - strand, within AO353_21475at 4699.937 kb on - strand, within AO353_21475at 4700.004 kb on - strandat 4700.004 kb on - strandat 4700.004 kb on - strandat 4700.032 kb on + strandat 4700.034 kb on + strandat 4700.034 kb on + strandat 4700.034 kb on + strandat 4700.405 kb on + strand, within AO353_21480at 4700.405 kb on + strand, within AO353_21480at 4700.405 kb on + strand, within AO353_21480at 4700.406 kb on - strand, within AO353_21480at 4700.406 kb on - strand, within AO353_21480at 4700.406 kb on - strand, within AO353_21480at 4700.447 kb on + strand, within AO353_21480at 4700.447 kb on + strand, within AO353_21480at 4700.447 kb on + strand, within AO353_21480at 4700.447 kb on + strand, within AO353_21480at 4700.447 kb on + strand, within AO353_21480at 4700.447 kb on + strand, within AO353_21480at 4700.447 kb on + strand, within AO353_21480at 4700.447 kb on + strand, within AO353_21480at 4700.447 kb on + strand, within AO353_21480at 4700.447 kb on + strand, within AO353_21480at 4700.447 kb on + strand, within AO353_21480at 4700.447 kb on + strand, within AO353_21480at 4700.447 kb on + strand, within AO353_21480at 4700.448 kb on - strand, within AO353_21480at 4700.448 kb on - strand, within AO353_21480at 4700.448 kb on - strand, within AO353_21480at 4700.448 kb on - strand, within AO353_21480at 4700.448 kb on - strand, within AO353_21480at 4700.448 kb on - strand, within AO353_21480at 4700.448 kb on - strand, within AO353_21480at 4700.448 kb on - strand, within AO353_21480at 4700.448 kb on - strand, within AO353_21480at 4700.448 kb on - strand, within AO353_21480at 4700.448 kb on - strand, within AO353_21480at 4700.448 kb on - strand, within AO353_21480at 4700.448 kb on - strand, within AO353_21480at 4700.632 kb on + strandat 4700.633 kb on - strandat 4700.633 kb on - strandat 4700.633 kb on - strandat 4700.639 kb on + strandat 4700.640 kb on - strandat 4700.683 kb on + strandat 4700.731 kb on + strandat 4700.732 kb on - strandat 4700.732 kb on - strandat 4700.733 kb on + strandat 4700.741 kb on + strandat 4700.809 kb on + strandat 4700.811 kb on + strandat 4700.812 kb on - strandat 4700.817 kb on + strandat 4700.861 kb on + strandat 4700.871 kb on + strandat 4700.871 kb on + strandat 4700.871 kb on + strandat 4700.871 kb on + strandat 4700.872 kb on - strandat 4700.872 kb on - strandat 4700.875 kb on + strandat 4700.875 kb on + strandat 4700.875 kb on + strandat 4700.876 kb on - strandat 4700.877 kb on + strandat 4700.878 kb on - strandat 4700.950 kb on - strandat 4700.950 kb on - strandat 4700.969 kb on - strandat 4701.033 kb on + strandat 4701.075 kb on + strandat 4701.075 kb on + strandat 4701.090 kb on + strandat 4701.090 kb on + strandat 4701.090 kb on + strandat 4701.091 kb on - strandat 4701.129 kb on + strandat 4701.130 kb on - strandat 4701.135 kb on + strandat 4701.135 kb on + strandat 4701.135 kb on + strandat 4701.135 kb on + strandat 4701.136 kb on - strandat 4701.136 kb on - strandat 4701.136 kb on - strandat 4701.136 kb on - strandat 4701.136 kb on - strandat 4701.167 kb on + strandat 4701.167 kb on + strandat 4701.281 kb on + strandat 4701.282 kb on - strandat 4701.400 kb on + strandat 4701.401 kb on - strandat 4701.486 kb on + strand, within AO353_21485at 4701.487 kb on - strand, within AO353_21485at 4701.487 kb on - strand, within AO353_21485at 4701.487 kb on - strand, within AO353_21485at 4701.488 kb on + strand, within AO353_21485at 4701.489 kb on - strand, within AO353_21485at 4701.509 kb on + strand, within AO353_21485at 4701.510 kb on - strand, within AO353_21485at 4701.588 kb on - strand, within AO353_21485at 4701.588 kb on - strand, within AO353_21485

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
remove
4,699,410 + AO353_21475 0.39 +0.3
4,699,410 + AO353_21475 0.39 -1.9
4,699,410 + AO353_21475 0.39 -0.8
4,699,410 + AO353_21475 0.39 +1.0
4,699,410 + AO353_21475 0.39 -0.9
4,699,410 + AO353_21475 0.39 -1.3
4,699,410 + AO353_21475 0.39 +1.7
4,699,410 + AO353_21475 0.39 +0.7
4,699,410 + -0.3
4,699,411 - AO353_21475 0.39 -0.3
4,699,411 - AO353_21475 0.39 +0.7
4,699,411 - AO353_21475 0.39 -0.6
4,699,411 - AO353_21475 0.39 -1.3
4,699,550 - AO353_21475 0.52 -1.6
4,699,614 + AO353_21475 0.58 +0.7
4,699,614 + AO353_21475 0.58 -1.6
4,699,615 - AO353_21475 0.59 -0.7
4,699,615 - AO353_21475 0.59 +0.3
4,699,774 + AO353_21475 0.74 -1.9
4,699,774 + AO353_21475 0.74 +0.7
4,699,774 + AO353_21475 0.74 -1.9
4,699,775 - AO353_21475 0.74 -1.3
4,699,936 + AO353_21475 0.90 -2.6
4,699,936 + AO353_21475 0.90 -0.3
4,699,936 + AO353_21475 0.90 -0.3
4,699,936 + AO353_21475 0.90 +0.1
4,699,936 + AO353_21475 0.90 -0.3
4,699,936 + AO353_21475 0.90 -1.5
4,699,937 - AO353_21475 0.90 +0.4
4,699,937 - AO353_21475 0.90 +0.3
4,699,937 - AO353_21475 0.90 -0.3
4,700,004 - +0.4
4,700,004 - +1.5
4,700,004 - -0.3
4,700,032 + +3.3
4,700,034 + +3.1
4,700,034 + +1.1
4,700,034 + +1.4
4,700,405 + AO353_21480 0.65 +4.6
4,700,405 + AO353_21480 0.65 +4.1
4,700,405 + AO353_21480 0.65 +5.5
4,700,406 - AO353_21480 0.66 +4.4
4,700,406 - AO353_21480 0.66 +5.7
4,700,406 - AO353_21480 0.66 +5.6
4,700,447 + AO353_21480 0.73 +6.1
4,700,447 + AO353_21480 0.73 +5.5
4,700,447 + AO353_21480 0.73 +6.3
4,700,447 + AO353_21480 0.73 +4.3
4,700,447 + AO353_21480 0.73 +5.8
4,700,447 + AO353_21480 0.73 +5.4
4,700,447 + AO353_21480 0.73 +5.4
4,700,447 + AO353_21480 0.73 +5.1
4,700,447 + AO353_21480 0.73 +6.1
4,700,447 + AO353_21480 0.73 +5.6
4,700,447 + AO353_21480 0.73 +5.7
4,700,447 + AO353_21480 0.73 +6.0
4,700,447 + AO353_21480 0.73 +6.4
4,700,448 - AO353_21480 0.73 +5.5
4,700,448 - AO353_21480 0.73 +6.7
4,700,448 - AO353_21480 0.73 +4.9
4,700,448 - AO353_21480 0.73 +4.3
4,700,448 - AO353_21480 0.73 +6.9
4,700,448 - AO353_21480 0.73 +2.4
4,700,448 - AO353_21480 0.73 +3.7
4,700,448 - AO353_21480 0.73 +5.2
4,700,448 - AO353_21480 0.73 +7.1
4,700,448 - AO353_21480 0.73 +4.4
4,700,448 - AO353_21480 0.73 +4.2
4,700,448 - AO353_21480 0.73 +5.4
4,700,448 - AO353_21480 0.73 +6.5
4,700,632 + +1.4
4,700,633 - +0.4
4,700,633 - +0.1
4,700,633 - +0.5
4,700,639 + -1.5
4,700,640 - -1.1
4,700,683 + -2.1
4,700,731 + -0.1
4,700,732 - +1.0
4,700,732 - +3.0
4,700,733 + +1.1
4,700,741 + +1.3
4,700,809 + +2.3
4,700,811 + -1.2
4,700,812 - +1.3
4,700,817 + -0.3
4,700,861 + +0.3
4,700,871 + +0.7
4,700,871 + +0.7
4,700,871 + -0.3
4,700,871 + -0.3
4,700,872 - +0.4
4,700,872 - +0.7
4,700,875 + +0.1
4,700,875 + -0.5
4,700,875 + -0.3
4,700,876 - -0.3
4,700,877 + -1.3
4,700,878 - +0.3
4,700,950 - -0.3
4,700,950 - -1.3
4,700,969 - +0.9
4,701,033 + -0.4
4,701,075 + -0.7
4,701,075 + +0.0
4,701,090 + +0.1
4,701,090 + +0.5
4,701,090 + -0.3
4,701,091 - -0.1
4,701,129 + +0.9
4,701,130 - -0.3
4,701,135 + +1.7
4,701,135 + +2.3
4,701,135 + +1.0
4,701,135 + +0.4
4,701,136 - +1.0
4,701,136 - +0.4
4,701,136 - +0.7
4,701,136 - -0.3
4,701,136 - -0.3
4,701,167 + +1.1
4,701,167 + +0.2
4,701,281 + -0.0
4,701,282 - +1.0
4,701,400 + +0.7
4,701,401 - -1.3
4,701,486 + AO353_21485 0.12 -0.0
4,701,487 - AO353_21485 0.12 -2.1
4,701,487 - AO353_21485 0.12 +1.5
4,701,487 - AO353_21485 0.12 -0.3
4,701,488 + AO353_21485 0.12 -1.3
4,701,489 - AO353_21485 0.12 +1.5
4,701,509 + AO353_21485 0.14 -3.1
4,701,510 - AO353_21485 0.14 +0.3
4,701,588 - AO353_21485 0.19 +2.5
4,701,588 - AO353_21485 0.19 +1.3

Or see this region's nucleotide sequence