Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_21475

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_21470 and AO353_21475 are separated by 245 nucleotidesAO353_21475 and AO353_21480 overlap by 6 nucleotides AO353_21470: AO353_21470 - cation:proton antiporter, at 4,695,849 to 4,698,767 _21470 AO353_21475: AO353_21475 - hypothetical protein, at 4,699,013 to 4,700,041 _21475 AO353_21480: AO353_21480 - Cro/Cl family transcriptional regulator, at 4,700,036 to 4,700,599 _21480 Position (kb) 4699 4700 4701Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7at 4698.041 kb on - strand, within AO353_21470at 4698.151 kb on + strand, within AO353_21470at 4698.151 kb on + strand, within AO353_21470at 4698.152 kb on - strand, within AO353_21470at 4698.205 kb on + strand, within AO353_21470at 4698.205 kb on + strand, within AO353_21470at 4698.205 kb on + strand, within AO353_21470at 4698.205 kb on + strand, within AO353_21470at 4698.206 kb on - strand, within AO353_21470at 4698.206 kb on - strandat 4698.206 kb on - strand, within AO353_21470at 4698.286 kb on + strand, within AO353_21470at 4698.286 kb on + strand, within AO353_21470at 4698.286 kb on + strand, within AO353_21470at 4698.286 kb on + strand, within AO353_21470at 4698.286 kb on + strand, within AO353_21470at 4698.286 kb on + strand, within AO353_21470at 4698.287 kb on - strand, within AO353_21470at 4698.287 kb on - strand, within AO353_21470at 4698.287 kb on - strand, within AO353_21470at 4698.323 kb on - strand, within AO353_21470at 4698.472 kb on + strand, within AO353_21470at 4698.472 kb on + strand, within AO353_21470at 4698.472 kb on + strand, within AO353_21470at 4698.472 kb on + strand, within AO353_21470at 4698.472 kb on + strand, within AO353_21470at 4698.472 kb on + strand, within AO353_21470at 4698.472 kb on + strand, within AO353_21470at 4698.472 kb on + strand, within AO353_21470at 4698.472 kb on + strand, within AO353_21470at 4698.472 kb on + strand, within AO353_21470at 4698.472 kb on + strand, within AO353_21470at 4698.472 kb on + strand, within AO353_21470at 4698.472 kb on + strand, within AO353_21470at 4698.473 kb on - strand, within AO353_21470at 4698.473 kb on - strand, within AO353_21470at 4698.473 kb on - strand, within AO353_21470at 4698.473 kb on - strand, within AO353_21470at 4698.473 kb on - strand, within AO353_21470at 4698.473 kb on - strand, within AO353_21470at 4698.473 kb on - strand, within AO353_21470at 4698.473 kb on - strand, within AO353_21470at 4698.473 kb on - strand, within AO353_21470at 4698.473 kb on - strand, within AO353_21470at 4698.473 kb on - strand, within AO353_21470at 4698.473 kb on - strand, within AO353_21470at 4698.473 kb on - strand, within AO353_21470at 4698.473 kb on - strand, within AO353_21470at 4698.473 kb on - strand, within AO353_21470at 4698.473 kb on - strand, within AO353_21470at 4698.475 kb on + strand, within AO353_21470at 4698.484 kb on + strandat 4698.485 kb on - strandat 4698.485 kb on - strandat 4698.734 kb on + strandat 4698.734 kb on + strandat 4698.734 kb on + strandat 4698.735 kb on - strandat 4698.750 kb on + strandat 4698.750 kb on + strandat 4698.750 kb on + strandat 4698.750 kb on + strandat 4698.750 kb on + strandat 4698.750 kb on + strandat 4698.756 kb on + strandat 4698.756 kb on + strandat 4698.756 kb on + strandat 4698.757 kb on - strandat 4698.757 kb on - strandat 4698.767 kb on + strandat 4698.767 kb on + strandat 4698.767 kb on + strandat 4698.767 kb on + strandat 4698.768 kb on - strandat 4698.768 kb on - strandat 4698.768 kb on - strandat 4698.775 kb on + strandat 4698.775 kb on + strandat 4698.776 kb on - strandat 4698.776 kb on - strandat 4698.776 kb on - strandat 4698.776 kb on - strandat 4698.802 kb on + strandat 4698.802 kb on + strandat 4698.802 kb on + strandat 4698.802 kb on + strandat 4698.802 kb on + strandat 4698.802 kb on + strandat 4698.803 kb on - strandat 4698.803 kb on - strandat 4698.803 kb on - strandat 4698.803 kb on - strandat 4698.803 kb on - strandat 4698.803 kb on - strandat 4698.849 kb on + strandat 4698.850 kb on - strandat 4698.850 kb on - strandat 4698.850 kb on - strandat 4698.856 kb on + strandat 4698.856 kb on + strandat 4698.856 kb on + strandat 4698.856 kb on + strandat 4698.857 kb on - strandat 4698.857 kb on - strandat 4698.896 kb on + strandat 4698.896 kb on + strandat 4698.938 kb on - strandat 4698.956 kb on + strandat 4698.957 kb on - strandat 4698.984 kb on + strandat 4698.985 kb on - strandat 4698.985 kb on - strandat 4698.985 kb on - strandat 4698.993 kb on + strandat 4698.994 kb on - strandat 4698.994 kb on - strandat 4699.410 kb on + strand, within AO353_21475at 4699.410 kb on + strand, within AO353_21475at 4699.410 kb on + strand, within AO353_21475at 4699.410 kb on + strand, within AO353_21475at 4699.410 kb on + strand, within AO353_21475at 4699.410 kb on + strand, within AO353_21475at 4699.410 kb on + strand, within AO353_21475at 4699.410 kb on + strand, within AO353_21475at 4699.410 kb on + strandat 4699.411 kb on - strand, within AO353_21475at 4699.411 kb on - strand, within AO353_21475at 4699.411 kb on - strand, within AO353_21475at 4699.411 kb on - strand, within AO353_21475at 4699.550 kb on - strand, within AO353_21475at 4699.614 kb on + strand, within AO353_21475at 4699.614 kb on + strand, within AO353_21475at 4699.615 kb on - strand, within AO353_21475at 4699.615 kb on - strand, within AO353_21475at 4699.774 kb on + strand, within AO353_21475at 4699.774 kb on + strand, within AO353_21475at 4699.774 kb on + strand, within AO353_21475at 4699.775 kb on - strand, within AO353_21475at 4699.936 kb on + strand, within AO353_21475at 4699.936 kb on + strand, within AO353_21475at 4699.936 kb on + strand, within AO353_21475at 4699.936 kb on + strand, within AO353_21475at 4699.936 kb on + strand, within AO353_21475at 4699.936 kb on + strand, within AO353_21475at 4699.937 kb on - strand, within AO353_21475at 4699.937 kb on - strand, within AO353_21475at 4699.937 kb on - strand, within AO353_21475at 4700.004 kb on - strandat 4700.004 kb on - strandat 4700.004 kb on - strandat 4700.032 kb on + strandat 4700.034 kb on + strandat 4700.034 kb on + strandat 4700.034 kb on + strandat 4700.405 kb on + strand, within AO353_21480at 4700.405 kb on + strand, within AO353_21480at 4700.405 kb on + strand, within AO353_21480at 4700.406 kb on - strand, within AO353_21480at 4700.406 kb on - strand, within AO353_21480at 4700.406 kb on - strand, within AO353_21480at 4700.447 kb on + strand, within AO353_21480at 4700.447 kb on + strand, within AO353_21480at 4700.447 kb on + strand, within AO353_21480at 4700.447 kb on + strand, within AO353_21480at 4700.447 kb on + strand, within AO353_21480at 4700.447 kb on + strand, within AO353_21480at 4700.447 kb on + strand, within AO353_21480at 4700.447 kb on + strand, within AO353_21480at 4700.447 kb on + strand, within AO353_21480at 4700.447 kb on + strand, within AO353_21480at 4700.447 kb on + strand, within AO353_21480at 4700.447 kb on + strand, within AO353_21480at 4700.447 kb on + strand, within AO353_21480at 4700.448 kb on - strand, within AO353_21480at 4700.448 kb on - strand, within AO353_21480at 4700.448 kb on - strand, within AO353_21480at 4700.448 kb on - strand, within AO353_21480at 4700.448 kb on - strand, within AO353_21480at 4700.448 kb on - strand, within AO353_21480at 4700.448 kb on - strand, within AO353_21480at 4700.448 kb on - strand, within AO353_21480at 4700.448 kb on - strand, within AO353_21480at 4700.448 kb on - strand, within AO353_21480at 4700.448 kb on - strand, within AO353_21480at 4700.448 kb on - strand, within AO353_21480at 4700.448 kb on - strand, within AO353_21480at 4700.632 kb on + strandat 4700.633 kb on - strandat 4700.633 kb on - strandat 4700.633 kb on - strandat 4700.639 kb on + strandat 4700.640 kb on - strandat 4700.683 kb on + strandat 4700.731 kb on + strandat 4700.732 kb on - strandat 4700.732 kb on - strandat 4700.733 kb on + strandat 4700.741 kb on + strandat 4700.809 kb on + strandat 4700.811 kb on + strandat 4700.812 kb on - strandat 4700.817 kb on + strandat 4700.861 kb on + strandat 4700.871 kb on + strandat 4700.871 kb on + strandat 4700.871 kb on + strandat 4700.871 kb on + strandat 4700.872 kb on - strandat 4700.872 kb on - strandat 4700.875 kb on + strandat 4700.875 kb on + strandat 4700.875 kb on + strandat 4700.876 kb on - strandat 4700.877 kb on + strandat 4700.878 kb on - strandat 4700.950 kb on - strandat 4700.950 kb on - strandat 4700.969 kb on - strandat 4701.033 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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4,698,041 - AO353_21470 0.75 -1.6
4,698,151 + AO353_21470 0.79 +0.7
4,698,151 + AO353_21470 0.79 -0.3
4,698,152 - AO353_21470 0.79 +1.8
4,698,205 + AO353_21470 0.81 -0.3
4,698,205 + AO353_21470 0.81 -0.3
4,698,205 + AO353_21470 0.81 -0.3
4,698,205 + AO353_21470 0.81 -1.3
4,698,206 - AO353_21470 0.81 +1.0
4,698,206 - +0.7
4,698,206 - AO353_21470 0.81 -1.3
4,698,286 + AO353_21470 0.83 +0.7
4,698,286 + AO353_21470 0.83 -0.9
4,698,286 + AO353_21470 0.83 +0.7
4,698,286 + AO353_21470 0.83 +1.0
4,698,286 + AO353_21470 0.83 +0.5
4,698,286 + AO353_21470 0.83 +0.7
4,698,287 - AO353_21470 0.84 +0.3
4,698,287 - AO353_21470 0.84 +1.0
4,698,287 - AO353_21470 0.84 +1.5
4,698,323 - AO353_21470 0.85 +0.0
4,698,472 + AO353_21470 0.90 +1.0
4,698,472 + AO353_21470 0.90 +1.5
4,698,472 + AO353_21470 0.90 +0.4
4,698,472 + AO353_21470 0.90 -1.5
4,698,472 + AO353_21470 0.90 +0.7
4,698,472 + AO353_21470 0.90 -0.9
4,698,472 + AO353_21470 0.90 -0.3
4,698,472 + AO353_21470 0.90 +0.7
4,698,472 + AO353_21470 0.90 -1.3
4,698,472 + AO353_21470 0.90 +1.1
4,698,472 + AO353_21470 0.90 +1.5
4,698,472 + AO353_21470 0.90 +1.3
4,698,472 + AO353_21470 0.90 -1.3
4,698,473 - AO353_21470 0.90 +0.7
4,698,473 - AO353_21470 0.90 +1.7
4,698,473 - AO353_21470 0.90 +1.1
4,698,473 - AO353_21470 0.90 +0.7
4,698,473 - AO353_21470 0.90 +2.7
4,698,473 - AO353_21470 0.90 -0.3
4,698,473 - AO353_21470 0.90 +1.3
4,698,473 - AO353_21470 0.90 +0.3
4,698,473 - AO353_21470 0.90 -0.3
4,698,473 - AO353_21470 0.90 +1.3
4,698,473 - AO353_21470 0.90 -0.7
4,698,473 - AO353_21470 0.90 -1.1
4,698,473 - AO353_21470 0.90 +0.7
4,698,473 - AO353_21470 0.90 -0.0
4,698,473 - AO353_21470 0.90 -1.9
4,698,473 - AO353_21470 0.90 -0.3
4,698,475 + AO353_21470 0.90 -1.9
4,698,484 + -0.5
4,698,485 - +0.3
4,698,485 - +1.8
4,698,734 + -2.3
4,698,734 + -0.3
4,698,734 + -1.9
4,698,735 - -2.3
4,698,750 + +1.0
4,698,750 + -0.9
4,698,750 + -1.1
4,698,750 + -1.0
4,698,750 + -1.3
4,698,750 + +0.6
4,698,756 + -0.1
4,698,756 + +1.4
4,698,756 + -0.3
4,698,757 - -1.0
4,698,757 - -3.1
4,698,767 + +0.3
4,698,767 + +0.1
4,698,767 + -0.6
4,698,767 + +0.7
4,698,768 - +0.7
4,698,768 - -1.3
4,698,768 - +1.8
4,698,775 + -0.5
4,698,775 + -1.3
4,698,776 - -1.3
4,698,776 - +0.2
4,698,776 - +0.7
4,698,776 - +1.1
4,698,802 + -2.3
4,698,802 + -0.2
4,698,802 + +0.3
4,698,802 + +1.1
4,698,802 + +0.7
4,698,802 + -0.9
4,698,803 - -0.3
4,698,803 - +1.7
4,698,803 - -1.3
4,698,803 - +1.5
4,698,803 - +1.1
4,698,803 - +0.1
4,698,849 + +0.3
4,698,850 - +2.6
4,698,850 - +1.2
4,698,850 - -0.3
4,698,856 + +0.1
4,698,856 + +1.3
4,698,856 + +1.3
4,698,856 + +0.7
4,698,857 - +1.1
4,698,857 - -1.6
4,698,896 + -0.3
4,698,896 + -1.9
4,698,938 - +0.4
4,698,956 + -2.3
4,698,957 - +3.3
4,698,984 + +1.0
4,698,985 - +0.7
4,698,985 - -0.5
4,698,985 - -0.6
4,698,993 + -0.3
4,698,994 - +0.9
4,698,994 - -0.9
4,699,410 + AO353_21475 0.39 +0.3
4,699,410 + AO353_21475 0.39 -1.9
4,699,410 + AO353_21475 0.39 -0.8
4,699,410 + AO353_21475 0.39 +1.0
4,699,410 + AO353_21475 0.39 -0.9
4,699,410 + AO353_21475 0.39 -1.3
4,699,410 + AO353_21475 0.39 +1.7
4,699,410 + AO353_21475 0.39 +0.7
4,699,410 + -0.3
4,699,411 - AO353_21475 0.39 -0.3
4,699,411 - AO353_21475 0.39 +0.7
4,699,411 - AO353_21475 0.39 -0.6
4,699,411 - AO353_21475 0.39 -1.3
4,699,550 - AO353_21475 0.52 -1.6
4,699,614 + AO353_21475 0.58 +0.7
4,699,614 + AO353_21475 0.58 -1.6
4,699,615 - AO353_21475 0.59 -0.7
4,699,615 - AO353_21475 0.59 +0.3
4,699,774 + AO353_21475 0.74 -1.9
4,699,774 + AO353_21475 0.74 +0.7
4,699,774 + AO353_21475 0.74 -1.9
4,699,775 - AO353_21475 0.74 -1.3
4,699,936 + AO353_21475 0.90 -2.6
4,699,936 + AO353_21475 0.90 -0.3
4,699,936 + AO353_21475 0.90 -0.3
4,699,936 + AO353_21475 0.90 +0.1
4,699,936 + AO353_21475 0.90 -0.3
4,699,936 + AO353_21475 0.90 -1.5
4,699,937 - AO353_21475 0.90 +0.4
4,699,937 - AO353_21475 0.90 +0.3
4,699,937 - AO353_21475 0.90 -0.3
4,700,004 - +0.4
4,700,004 - +1.5
4,700,004 - -0.3
4,700,032 + +3.3
4,700,034 + +3.1
4,700,034 + +1.1
4,700,034 + +1.4
4,700,405 + AO353_21480 0.65 +4.6
4,700,405 + AO353_21480 0.65 +4.1
4,700,405 + AO353_21480 0.65 +5.5
4,700,406 - AO353_21480 0.66 +4.4
4,700,406 - AO353_21480 0.66 +5.7
4,700,406 - AO353_21480 0.66 +5.6
4,700,447 + AO353_21480 0.73 +6.1
4,700,447 + AO353_21480 0.73 +5.5
4,700,447 + AO353_21480 0.73 +6.3
4,700,447 + AO353_21480 0.73 +4.3
4,700,447 + AO353_21480 0.73 +5.8
4,700,447 + AO353_21480 0.73 +5.4
4,700,447 + AO353_21480 0.73 +5.4
4,700,447 + AO353_21480 0.73 +5.1
4,700,447 + AO353_21480 0.73 +6.1
4,700,447 + AO353_21480 0.73 +5.6
4,700,447 + AO353_21480 0.73 +5.7
4,700,447 + AO353_21480 0.73 +6.0
4,700,447 + AO353_21480 0.73 +6.4
4,700,448 - AO353_21480 0.73 +5.5
4,700,448 - AO353_21480 0.73 +6.7
4,700,448 - AO353_21480 0.73 +4.9
4,700,448 - AO353_21480 0.73 +4.3
4,700,448 - AO353_21480 0.73 +6.9
4,700,448 - AO353_21480 0.73 +2.4
4,700,448 - AO353_21480 0.73 +3.7
4,700,448 - AO353_21480 0.73 +5.2
4,700,448 - AO353_21480 0.73 +7.1
4,700,448 - AO353_21480 0.73 +4.4
4,700,448 - AO353_21480 0.73 +4.2
4,700,448 - AO353_21480 0.73 +5.4
4,700,448 - AO353_21480 0.73 +6.5
4,700,632 + +1.4
4,700,633 - +0.4
4,700,633 - +0.1
4,700,633 - +0.5
4,700,639 + -1.5
4,700,640 - -1.1
4,700,683 + -2.1
4,700,731 + -0.1
4,700,732 - +1.0
4,700,732 - +3.0
4,700,733 + +1.1
4,700,741 + +1.3
4,700,809 + +2.3
4,700,811 + -1.2
4,700,812 - +1.3
4,700,817 + -0.3
4,700,861 + +0.3
4,700,871 + +0.7
4,700,871 + +0.7
4,700,871 + -0.3
4,700,871 + -0.3
4,700,872 - +0.4
4,700,872 - +0.7
4,700,875 + +0.1
4,700,875 + -0.5
4,700,875 + -0.3
4,700,876 - -0.3
4,700,877 + -1.3
4,700,878 - +0.3
4,700,950 - -0.3
4,700,950 - -1.3
4,700,969 - +0.9
4,701,033 + -0.4

Or see this region's nucleotide sequence