Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_18380

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_18370 and AO353_18375 are separated by 97 nucleotidesAO353_18375 and AO353_18380 overlap by 53 nucleotidesAO353_18380 and AO353_18385 are separated by 103 nucleotides AO353_18370: AO353_18370 - GntR family transcriptional regulator, at 4,046,304 to 4,047,140 _18370 AO353_18375: AO353_18375 - hypothetical protein, at 4,047,238 to 4,048,167 _18375 AO353_18380: AO353_18380 - hypothetical protein, at 4,048,115 to 4,049,293 _18380 AO353_18385: AO353_18385 - LysR family transcriptional regulator, at 4,049,397 to 4,050,323 _18385 Position (kb) 4048 4049 4050Strain fitness (log2 ratio) -2 -1 0 1 2at 4047.176 kb on - strandat 4047.195 kb on - strandat 4047.201 kb on + strandat 4047.201 kb on + strandat 4047.201 kb on + strandat 4047.201 kb on + strandat 4047.201 kb on + strandat 4047.202 kb on - strandat 4047.202 kb on - strandat 4047.550 kb on + strand, within AO353_18375at 4047.550 kb on + strand, within AO353_18375at 4047.551 kb on - strand, within AO353_18375at 4047.551 kb on - strand, within AO353_18375at 4047.551 kb on - strand, within AO353_18375at 4047.645 kb on + strand, within AO353_18375at 4047.645 kb on + strand, within AO353_18375at 4047.646 kb on - strand, within AO353_18375at 4047.651 kb on + strand, within AO353_18375at 4047.651 kb on + strand, within AO353_18375at 4047.652 kb on - strand, within AO353_18375at 4047.815 kb on - strand, within AO353_18375at 4047.815 kb on - strand, within AO353_18375at 4047.815 kb on - strand, within AO353_18375at 4047.815 kb on - strand, within AO353_18375at 4047.861 kb on - strand, within AO353_18375at 4047.946 kb on + strand, within AO353_18375at 4047.946 kb on + strand, within AO353_18375at 4047.946 kb on + strand, within AO353_18375at 4047.946 kb on + strand, within AO353_18375at 4047.946 kb on + strand, within AO353_18375at 4047.946 kb on + strand, within AO353_18375at 4047.947 kb on - strand, within AO353_18375at 4047.947 kb on - strand, within AO353_18375at 4048.269 kb on - strand, within AO353_18380at 4048.425 kb on - strand, within AO353_18380at 4048.425 kb on - strand, within AO353_18380at 4048.425 kb on - strand, within AO353_18380at 4048.425 kb on - strand, within AO353_18380at 4048.510 kb on + strand, within AO353_18380at 4048.511 kb on - strand, within AO353_18380at 4048.644 kb on + strand, within AO353_18380at 4048.644 kb on + strand, within AO353_18380at 4048.644 kb on + strand, within AO353_18380at 4048.644 kb on + strand, within AO353_18380at 4048.644 kb on + strand, within AO353_18380at 4048.645 kb on - strand, within AO353_18380at 4048.656 kb on + strand, within AO353_18380at 4048.656 kb on + strand, within AO353_18380at 4048.656 kb on + strand, within AO353_18380at 4048.657 kb on - strand, within AO353_18380at 4048.794 kb on + strand, within AO353_18380at 4048.794 kb on + strand, within AO353_18380at 4048.795 kb on - strand, within AO353_18380at 4048.795 kb on - strand, within AO353_18380at 4048.795 kb on - strand, within AO353_18380at 4048.795 kb on - strand, within AO353_18380at 4048.795 kb on - strand, within AO353_18380at 4048.889 kb on + strand, within AO353_18380at 4048.976 kb on + strand, within AO353_18380at 4048.976 kb on + strand, within AO353_18380at 4048.976 kb on + strand, within AO353_18380at 4048.977 kb on - strand, within AO353_18380at 4048.977 kb on - strand, within AO353_18380at 4048.977 kb on - strand, within AO353_18380at 4049.045 kb on + strand, within AO353_18380at 4049.045 kb on + strand, within AO353_18380at 4049.045 kb on + strand, within AO353_18380at 4049.045 kb on + strand, within AO353_18380at 4049.046 kb on - strand, within AO353_18380at 4049.046 kb on - strand, within AO353_18380at 4049.133 kb on + strand, within AO353_18380at 4049.133 kb on + strand, within AO353_18380at 4049.133 kb on + strand, within AO353_18380at 4049.133 kb on + strand, within AO353_18380at 4049.142 kb on + strand, within AO353_18380at 4049.142 kb on + strand, within AO353_18380at 4049.142 kb on + strand, within AO353_18380at 4049.143 kb on - strand, within AO353_18380at 4049.143 kb on - strand, within AO353_18380at 4049.143 kb on - strand, within AO353_18380at 4049.273 kb on + strandat 4049.279 kb on + strandat 4049.279 kb on + strandat 4049.279 kb on + strandat 4049.279 kb on + strandat 4049.279 kb on + strandat 4049.279 kb on + strandat 4049.279 kb on + strandat 4049.279 kb on + strandat 4049.279 kb on + strandat 4049.279 kb on + strandat 4049.279 kb on + strandat 4049.279 kb on + strandat 4049.279 kb on + strandat 4049.279 kb on + strandat 4049.280 kb on - strandat 4049.280 kb on - strandat 4049.280 kb on - strandat 4049.280 kb on - strandat 4049.280 kb on - strandat 4049.280 kb on - strandat 4049.280 kb on - strandat 4049.280 kb on - strandat 4049.280 kb on - strandat 4049.280 kb on - strandat 4049.280 kb on - strandat 4049.280 kb on - strandat 4049.281 kb on + strandat 4049.281 kb on + strandat 4049.281 kb on + strandat 4049.331 kb on + strandat 4049.332 kb on - strandat 4049.332 kb on - strandat 4049.332 kb on - strandat 4049.530 kb on + strand, within AO353_18385at 4049.530 kb on + strand, within AO353_18385at 4049.530 kb on + strand, within AO353_18385at 4049.530 kb on + strand, within AO353_18385at 4049.531 kb on - strand, within AO353_18385at 4049.531 kb on - strand, within AO353_18385at 4049.531 kb on - strand, within AO353_18385at 4049.531 kb on - strand, within AO353_18385at 4049.584 kb on + strand, within AO353_18385at 4049.584 kb on + strand, within AO353_18385at 4049.584 kb on + strand, within AO353_18385at 4049.584 kb on + strand, within AO353_18385at 4049.585 kb on - strand, within AO353_18385at 4049.585 kb on - strand, within AO353_18385at 4049.585 kb on - strand, within AO353_18385at 4049.595 kb on + strand, within AO353_18385at 4049.596 kb on - strand, within AO353_18385at 4049.596 kb on - strand, within AO353_18385at 4049.596 kb on - strand, within AO353_18385at 4049.596 kb on - strand, within AO353_18385at 4049.685 kb on + strand, within AO353_18385at 4049.685 kb on + strand, within AO353_18385at 4049.685 kb on + strand, within AO353_18385at 4049.685 kb on + strand, within AO353_18385at 4049.685 kb on + strand, within AO353_18385at 4049.685 kb on + strand, within AO353_18385at 4049.685 kb on + strand, within AO353_18385at 4049.685 kb on + strand, within AO353_18385at 4049.685 kb on + strand, within AO353_18385at 4049.685 kb on + strand, within AO353_18385at 4049.685 kb on + strand, within AO353_18385at 4049.686 kb on - strand, within AO353_18385at 4049.686 kb on - strand, within AO353_18385at 4049.686 kb on - strand, within AO353_18385at 4049.686 kb on - strand, within AO353_18385at 4049.686 kb on - strand, within AO353_18385at 4049.686 kb on - strand, within AO353_18385at 4049.686 kb on - strand, within AO353_18385at 4049.686 kb on - strand, within AO353_18385at 4049.686 kb on - strand, within AO353_18385at 4049.686 kb on - strand, within AO353_18385at 4049.686 kb on - strand, within AO353_18385at 4049.686 kb on - strand, within AO353_18385at 4049.740 kb on - strand, within AO353_18385at 4049.740 kb on - strand, within AO353_18385at 4049.740 kb on - strand, within AO353_18385at 4050.009 kb on + strand, within AO353_18385at 4050.048 kb on + strand, within AO353_18385at 4050.048 kb on + strand, within AO353_18385at 4050.049 kb on - strand, within AO353_18385at 4050.203 kb on + strand, within AO353_18385at 4050.204 kb on - strand, within AO353_18385at 4050.204 kb on - strand, within AO353_18385at 4050.252 kb on + strandat 4050.252 kb on + strandat 4050.252 kb on + strandat 4050.252 kb on + strandat 4050.253 kb on - strandat 4050.253 kb on - strandat 4050.253 kb on - strandat 4050.253 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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4,047,176 - +0.7
4,047,195 - +0.9
4,047,201 + +1.2
4,047,201 + -0.1
4,047,201 + +1.1
4,047,201 + +0.2
4,047,201 + -0.5
4,047,202 - +1.5
4,047,202 - +0.1
4,047,550 + AO353_18375 0.34 -0.7
4,047,550 + AO353_18375 0.34 +0.5
4,047,551 - AO353_18375 0.34 +2.0
4,047,551 - AO353_18375 0.34 -1.4
4,047,551 - AO353_18375 0.34 -0.5
4,047,645 + AO353_18375 0.44 -0.1
4,047,645 + AO353_18375 0.44 -0.7
4,047,646 - AO353_18375 0.44 -1.3
4,047,651 + AO353_18375 0.44 +0.2
4,047,651 + AO353_18375 0.44 +0.9
4,047,652 - AO353_18375 0.45 -0.1
4,047,815 - AO353_18375 0.62 +0.9
4,047,815 - AO353_18375 0.62 -0.1
4,047,815 - AO353_18375 0.62 +1.6
4,047,815 - AO353_18375 0.62 -0.7
4,047,861 - AO353_18375 0.67 -0.7
4,047,946 + AO353_18375 0.76 +1.2
4,047,946 + AO353_18375 0.76 +0.4
4,047,946 + AO353_18375 0.76 -0.1
4,047,946 + AO353_18375 0.76 -1.1
4,047,946 + AO353_18375 0.76 -1.7
4,047,946 + AO353_18375 0.76 -0.5
4,047,947 - AO353_18375 0.76 +0.9
4,047,947 - AO353_18375 0.76 +0.8
4,048,269 - AO353_18380 0.13 +0.9
4,048,425 - AO353_18380 0.26 +0.5
4,048,425 - AO353_18380 0.26 +0.9
4,048,425 - AO353_18380 0.26 +1.7
4,048,425 - AO353_18380 0.26 -0.5
4,048,510 + AO353_18380 0.34 +2.2
4,048,511 - AO353_18380 0.34 -0.1
4,048,644 + AO353_18380 0.45 +0.9
4,048,644 + AO353_18380 0.45 +1.2
4,048,644 + AO353_18380 0.45 -0.1
4,048,644 + AO353_18380 0.45 +1.3
4,048,644 + AO353_18380 0.45 -2.1
4,048,645 - AO353_18380 0.45 +0.7
4,048,656 + AO353_18380 0.46 +0.6
4,048,656 + AO353_18380 0.46 +0.7
4,048,656 + AO353_18380 0.46 +1.2
4,048,657 - AO353_18380 0.46 -1.2
4,048,794 + AO353_18380 0.58 -0.1
4,048,794 + AO353_18380 0.58 +0.7
4,048,795 - AO353_18380 0.58 +0.5
4,048,795 - AO353_18380 0.58 -2.7
4,048,795 - AO353_18380 0.58 +0.9
4,048,795 - AO353_18380 0.58 -1.1
4,048,795 - AO353_18380 0.58 -0.1
4,048,889 + AO353_18380 0.66 +1.2
4,048,976 + AO353_18380 0.73 -1.4
4,048,976 + AO353_18380 0.73 -1.7
4,048,976 + AO353_18380 0.73 -0.1
4,048,977 - AO353_18380 0.73 -0.1
4,048,977 - AO353_18380 0.73 +1.2
4,048,977 - AO353_18380 0.73 +0.2
4,049,045 + AO353_18380 0.79 -0.7
4,049,045 + AO353_18380 0.79 +0.3
4,049,045 + AO353_18380 0.79 +1.2
4,049,045 + AO353_18380 0.79 +0.7
4,049,046 - AO353_18380 0.79 -0.7
4,049,046 - AO353_18380 0.79 -0.1
4,049,133 + AO353_18380 0.86 +0.9
4,049,133 + AO353_18380 0.86 -1.1
4,049,133 + AO353_18380 0.86 +0.5
4,049,133 + AO353_18380 0.86 -0.1
4,049,142 + AO353_18380 0.87 -1.1
4,049,142 + AO353_18380 0.87 -1.1
4,049,142 + AO353_18380 0.87 -0.7
4,049,143 - AO353_18380 0.87 -0.1
4,049,143 - AO353_18380 0.87 -0.7
4,049,143 - AO353_18380 0.87 -1.4
4,049,273 + +1.9
4,049,279 + -0.1
4,049,279 + +0.6
4,049,279 + -1.4
4,049,279 + -0.1
4,049,279 + +1.2
4,049,279 + -0.1
4,049,279 + -1.3
4,049,279 + +0.6
4,049,279 + -0.7
4,049,279 + -0.1
4,049,279 + -1.1
4,049,279 + +0.9
4,049,279 + -0.4
4,049,279 + -0.7
4,049,280 - +0.3
4,049,280 - -0.1
4,049,280 - +0.5
4,049,280 - +0.7
4,049,280 - +0.9
4,049,280 - -0.1
4,049,280 - +0.7
4,049,280 - -0.7
4,049,280 - -1.1
4,049,280 - -1.7
4,049,280 - +0.5
4,049,280 - +1.3
4,049,281 + -0.1
4,049,281 + +2.2
4,049,281 + -0.9
4,049,331 + -0.7
4,049,332 - -0.1
4,049,332 - +0.7
4,049,332 - +1.3
4,049,530 + AO353_18385 0.14 -0.4
4,049,530 + AO353_18385 0.14 -0.4
4,049,530 + AO353_18385 0.14 -1.1
4,049,530 + AO353_18385 0.14 -0.1
4,049,531 - AO353_18385 0.14 -0.1
4,049,531 - AO353_18385 0.14 -1.4
4,049,531 - AO353_18385 0.14 +1.5
4,049,531 - AO353_18385 0.14 +1.8
4,049,584 + AO353_18385 0.20 -0.7
4,049,584 + AO353_18385 0.20 +1.2
4,049,584 + AO353_18385 0.20 -0.8
4,049,584 + AO353_18385 0.20 -0.1
4,049,585 - AO353_18385 0.20 +0.3
4,049,585 - AO353_18385 0.20 -0.7
4,049,585 - AO353_18385 0.20 -1.1
4,049,595 + AO353_18385 0.21 +0.3
4,049,596 - AO353_18385 0.21 +0.9
4,049,596 - AO353_18385 0.21 +1.6
4,049,596 - AO353_18385 0.21 -0.1
4,049,596 - AO353_18385 0.21 -1.1
4,049,685 + AO353_18385 0.31 +0.4
4,049,685 + AO353_18385 0.31 -1.3
4,049,685 + AO353_18385 0.31 +0.2
4,049,685 + AO353_18385 0.31 +1.8
4,049,685 + AO353_18385 0.31 +2.2
4,049,685 + AO353_18385 0.31 +0.9
4,049,685 + AO353_18385 0.31 +1.1
4,049,685 + AO353_18385 0.31 -0.1
4,049,685 + AO353_18385 0.31 -1.7
4,049,685 + AO353_18385 0.31 -0.7
4,049,685 + AO353_18385 0.31 -0.1
4,049,686 - AO353_18385 0.31 -2.1
4,049,686 - AO353_18385 0.31 -0.8
4,049,686 - AO353_18385 0.31 +0.6
4,049,686 - AO353_18385 0.31 -0.4
4,049,686 - AO353_18385 0.31 -1.1
4,049,686 - AO353_18385 0.31 -0.8
4,049,686 - AO353_18385 0.31 +0.4
4,049,686 - AO353_18385 0.31 +0.3
4,049,686 - AO353_18385 0.31 +0.0
4,049,686 - AO353_18385 0.31 +0.1
4,049,686 - AO353_18385 0.31 +1.9
4,049,686 - AO353_18385 0.31 -0.7
4,049,740 - AO353_18385 0.37 -0.1
4,049,740 - AO353_18385 0.37 -0.7
4,049,740 - AO353_18385 0.37 -0.5
4,050,009 + AO353_18385 0.66 +0.3
4,050,048 + AO353_18385 0.70 +0.5
4,050,048 + AO353_18385 0.70 -1.7
4,050,049 - AO353_18385 0.70 -2.1
4,050,203 + AO353_18385 0.87 +0.0
4,050,204 - AO353_18385 0.87 +1.5
4,050,204 - AO353_18385 0.87 -0.1
4,050,252 + -1.1
4,050,252 + -1.1
4,050,252 + -0.1
4,050,252 + -0.1
4,050,253 - +0.1
4,050,253 - +0.9
4,050,253 - -0.7
4,050,253 - +0.5

Or see this region's nucleotide sequence