Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_17415

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_17405 and AO353_17410 are separated by 14 nucleotidesAO353_17410 and AO353_17415 are separated by 182 nucleotidesAO353_17415 and AO353_17420 are separated by 393 nucleotides AO353_17405: AO353_17405 - glutamine amidotransferase, at 3,845,792 to 3,846,373 _17405 AO353_17410: AO353_17410 - arylsulfate sulfotransferase, at 3,846,388 to 3,846,693 _17410 AO353_17415: AO353_17415 - hypothetical protein, at 3,846,876 to 3,847,220 _17415 AO353_17420: AO353_17420 - hypothetical protein, at 3,847,614 to 3,848,633 _17420 Position (kb) 3846 3847 3848Strain fitness (log2 ratio) -2 -1 0 1 2at 3845.966 kb on + strand, within AO353_17405at 3845.966 kb on + strand, within AO353_17405at 3845.966 kb on + strand, within AO353_17405at 3845.966 kb on + strand, within AO353_17405at 3845.966 kb on + strand, within AO353_17405at 3845.967 kb on - strand, within AO353_17405at 3845.967 kb on - strand, within AO353_17405at 3845.967 kb on - strand, within AO353_17405at 3845.967 kb on - strand, within AO353_17405at 3846.071 kb on + strand, within AO353_17405at 3846.071 kb on + strand, within AO353_17405at 3846.071 kb on + strand, within AO353_17405at 3846.071 kb on + strand, within AO353_17405at 3846.072 kb on - strand, within AO353_17405at 3846.072 kb on - strand, within AO353_17405at 3846.072 kb on - strand, within AO353_17405at 3846.072 kb on - strand, within AO353_17405at 3846.096 kb on + strand, within AO353_17405at 3846.096 kb on + strand, within AO353_17405at 3846.371 kb on + strandat 3846.371 kb on + strandat 3846.372 kb on - strandat 3846.372 kb on - strandat 3846.372 kb on - strandat 3846.400 kb on + strandat 3846.401 kb on - strandat 3846.401 kb on - strandat 3846.401 kb on - strandat 3846.425 kb on - strand, within AO353_17410at 3846.559 kb on + strand, within AO353_17410at 3846.559 kb on + strand, within AO353_17410at 3846.665 kb on + strandat 3846.691 kb on + strandat 3846.691 kb on + strandat 3846.691 kb on + strandat 3846.691 kb on + strandat 3846.691 kb on + strandat 3846.691 kb on + strandat 3846.691 kb on + strandat 3846.692 kb on - strandat 3846.692 kb on - strandat 3846.692 kb on - strandat 3846.692 kb on - strandat 3846.692 kb on - strandat 3846.692 kb on - strandat 3846.692 kb on - strandat 3846.703 kb on + strandat 3846.703 kb on + strandat 3846.703 kb on + strandat 3846.703 kb on + strandat 3846.703 kb on + strandat 3846.704 kb on - strandat 3846.704 kb on - strandat 3846.704 kb on - strandat 3846.704 kb on - strandat 3846.704 kb on - strandat 3846.774 kb on - strandat 3846.835 kb on - strandat 3846.835 kb on - strandat 3846.835 kb on - strandat 3846.888 kb on + strandat 3846.888 kb on + strandat 3846.888 kb on + strandat 3846.889 kb on - strandat 3846.889 kb on - strandat 3846.959 kb on + strand, within AO353_17415at 3846.960 kb on - strand, within AO353_17415at 3846.972 kb on + strand, within AO353_17415at 3846.973 kb on - strandat 3846.973 kb on - strand, within AO353_17415at 3846.973 kb on - strand, within AO353_17415at 3846.973 kb on - strand, within AO353_17415at 3846.973 kb on - strand, within AO353_17415at 3846.973 kb on - strand, within AO353_17415at 3846.973 kb on - strand, within AO353_17415at 3846.973 kb on - strand, within AO353_17415at 3847.041 kb on + strand, within AO353_17415at 3847.042 kb on - strand, within AO353_17415at 3847.042 kb on - strand, within AO353_17415at 3847.074 kb on + strand, within AO353_17415at 3847.074 kb on + strand, within AO353_17415at 3847.074 kb on + strand, within AO353_17415at 3847.074 kb on + strand, within AO353_17415at 3847.074 kb on + strand, within AO353_17415at 3847.074 kb on + strand, within AO353_17415at 3847.074 kb on + strand, within AO353_17415at 3847.074 kb on + strand, within AO353_17415at 3847.074 kb on + strand, within AO353_17415at 3847.075 kb on - strand, within AO353_17415at 3847.075 kb on - strand, within AO353_17415at 3847.075 kb on - strand, within AO353_17415at 3847.075 kb on - strand, within AO353_17415at 3847.075 kb on - strand, within AO353_17415at 3847.075 kb on - strand, within AO353_17415at 3847.075 kb on - strand, within AO353_17415at 3847.075 kb on - strand, within AO353_17415at 3847.075 kb on - strand, within AO353_17415at 3847.075 kb on - strand, within AO353_17415at 3847.075 kb on - strand, within AO353_17415at 3847.075 kb on - strand, within AO353_17415at 3847.125 kb on + strand, within AO353_17415at 3847.125 kb on + strand, within AO353_17415at 3847.125 kb on + strand, within AO353_17415at 3847.125 kb on + strand, within AO353_17415at 3847.126 kb on - strand, within AO353_17415at 3847.126 kb on - strand, within AO353_17415at 3847.126 kb on - strand, within AO353_17415at 3847.126 kb on - strand, within AO353_17415at 3847.126 kb on - strand, within AO353_17415at 3847.218 kb on + strandat 3847.219 kb on - strandat 3847.219 kb on - strandat 3847.219 kb on - strandat 3847.219 kb on - strandat 3847.714 kb on + strandat 3847.715 kb on - strandat 3847.715 kb on - strandat 3847.869 kb on + strand, within AO353_17420at 3847.869 kb on + strand, within AO353_17420at 3847.870 kb on - strand, within AO353_17420at 3847.870 kb on - strand, within AO353_17420at 3847.880 kb on - strand, within AO353_17420at 3847.894 kb on + strand, within AO353_17420at 3847.894 kb on + strand, within AO353_17420at 3847.895 kb on - strand, within AO353_17420at 3847.895 kb on - strand, within AO353_17420at 3848.097 kb on - strand, within AO353_17420at 3848.105 kb on + strand, within AO353_17420at 3848.112 kb on - strand, within AO353_17420at 3848.145 kb on + strand, within AO353_17420at 3848.145 kb on + strand, within AO353_17420at 3848.146 kb on - strand, within AO353_17420at 3848.146 kb on - strand, within AO353_17420at 3848.146 kb on - strand, within AO353_17420at 3848.185 kb on + strand, within AO353_17420at 3848.185 kb on + strand, within AO353_17420at 3848.185 kb on + strand, within AO353_17420at 3848.185 kb on + strand, within AO353_17420at 3848.186 kb on - strand, within AO353_17420at 3848.186 kb on - strand, within AO353_17420at 3848.200 kb on + strand, within AO353_17420at 3848.200 kb on + strand, within AO353_17420at 3848.201 kb on - strand, within AO353_17420at 3848.201 kb on - strand, within AO353_17420

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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3,845,966 + AO353_17405 0.30 -1.0
3,845,966 + AO353_17405 0.30 -0.8
3,845,966 + AO353_17405 0.30 -1.0
3,845,966 + AO353_17405 0.30 +0.4
3,845,966 + AO353_17405 0.30 +2.0
3,845,967 - AO353_17405 0.30 -0.2
3,845,967 - AO353_17405 0.30 +0.2
3,845,967 - AO353_17405 0.30 +0.2
3,845,967 - AO353_17405 0.30 -0.9
3,846,071 + AO353_17405 0.48 -0.0
3,846,071 + AO353_17405 0.48 +1.0
3,846,071 + AO353_17405 0.48 +1.6
3,846,071 + AO353_17405 0.48 +1.7
3,846,072 - AO353_17405 0.48 +0.6
3,846,072 - AO353_17405 0.48 +1.0
3,846,072 - AO353_17405 0.48 +2.6
3,846,072 - AO353_17405 0.48 -0.0
3,846,096 + AO353_17405 0.52 +0.4
3,846,096 + AO353_17405 0.52 +0.7
3,846,371 + +1.0
3,846,371 + -0.6
3,846,372 - +0.6
3,846,372 - -1.6
3,846,372 - -0.0
3,846,400 + +2.0
3,846,401 - -0.0
3,846,401 - -1.0
3,846,401 - -1.0
3,846,425 - AO353_17410 0.12 -0.8
3,846,559 + AO353_17410 0.56 -1.0
3,846,559 + AO353_17410 0.56 +1.0
3,846,665 + -0.0
3,846,691 + -0.0
3,846,691 + -1.6
3,846,691 + -0.0
3,846,691 + -0.0
3,846,691 + +0.9
3,846,691 + -1.8
3,846,691 + +1.3
3,846,692 - -0.0
3,846,692 - -0.0
3,846,692 - +1.1
3,846,692 - +1.0
3,846,692 - -0.3
3,846,692 - -1.0
3,846,692 - -0.3
3,846,703 + -0.0
3,846,703 + -0.0
3,846,703 + +0.1
3,846,703 + +0.4
3,846,703 + +1.2
3,846,704 - -1.3
3,846,704 - +1.0
3,846,704 - +1.7
3,846,704 - -0.0
3,846,704 - -0.0
3,846,774 - +0.5
3,846,835 - -0.0
3,846,835 - +0.7
3,846,835 - -1.6
3,846,888 + +0.2
3,846,888 + +1.0
3,846,888 + +0.4
3,846,889 - -0.0
3,846,889 - +1.0
3,846,959 + AO353_17415 0.24 +2.0
3,846,960 - AO353_17415 0.24 +0.6
3,846,972 + AO353_17415 0.28 +1.0
3,846,973 - +2.0
3,846,973 - AO353_17415 0.28 +1.3
3,846,973 - AO353_17415 0.28 -0.4
3,846,973 - AO353_17415 0.28 -0.9
3,846,973 - AO353_17415 0.28 -0.0
3,846,973 - AO353_17415 0.28 +0.7
3,846,973 - AO353_17415 0.28 -0.6
3,846,973 - AO353_17415 0.28 -1.0
3,847,041 + AO353_17415 0.48 +1.6
3,847,042 - AO353_17415 0.48 -0.0
3,847,042 - AO353_17415 0.48 -0.0
3,847,074 + AO353_17415 0.57 +0.7
3,847,074 + AO353_17415 0.57 +2.3
3,847,074 + AO353_17415 0.57 +0.9
3,847,074 + AO353_17415 0.57 +1.4
3,847,074 + AO353_17415 0.57 +1.4
3,847,074 + AO353_17415 0.57 +1.0
3,847,074 + AO353_17415 0.57 -1.6
3,847,074 + AO353_17415 0.57 +1.0
3,847,074 + AO353_17415 0.57 -2.1
3,847,075 - AO353_17415 0.58 +0.7
3,847,075 - AO353_17415 0.58 +0.5
3,847,075 - AO353_17415 0.58 -0.4
3,847,075 - AO353_17415 0.58 -0.0
3,847,075 - AO353_17415 0.58 -1.0
3,847,075 - AO353_17415 0.58 +0.6
3,847,075 - AO353_17415 0.58 +1.6
3,847,075 - AO353_17415 0.58 -0.0
3,847,075 - AO353_17415 0.58 +0.7
3,847,075 - AO353_17415 0.58 +1.6
3,847,075 - AO353_17415 0.58 +1.6
3,847,075 - AO353_17415 0.58 -1.0
3,847,125 + AO353_17415 0.72 -0.4
3,847,125 + AO353_17415 0.72 -0.0
3,847,125 + AO353_17415 0.72 -0.0
3,847,125 + AO353_17415 0.72 +1.6
3,847,126 - AO353_17415 0.72 +0.6
3,847,126 - AO353_17415 0.72 +2.0
3,847,126 - AO353_17415 0.72 -0.4
3,847,126 - AO353_17415 0.72 +1.7
3,847,126 - AO353_17415 0.72 -0.0
3,847,218 + -0.0
3,847,219 - +2.1
3,847,219 - +0.5
3,847,219 - -0.7
3,847,219 - +0.6
3,847,714 + -0.6
3,847,715 - -0.3
3,847,715 - -0.8
3,847,869 + AO353_17420 0.25 -1.6
3,847,869 + AO353_17420 0.25 -1.0
3,847,870 - AO353_17420 0.25 -0.2
3,847,870 - AO353_17420 0.25 -0.0
3,847,880 - AO353_17420 0.26 -0.6
3,847,894 + AO353_17420 0.27 -0.6
3,847,894 + AO353_17420 0.27 +0.3
3,847,895 - AO353_17420 0.28 +0.6
3,847,895 - AO353_17420 0.28 -0.7
3,848,097 - AO353_17420 0.47 +1.2
3,848,105 + AO353_17420 0.48 +0.7
3,848,112 - AO353_17420 0.49 -0.0
3,848,145 + AO353_17420 0.52 -0.0
3,848,145 + AO353_17420 0.52 +0.6
3,848,146 - AO353_17420 0.52 -0.0
3,848,146 - AO353_17420 0.52 +0.6
3,848,146 - AO353_17420 0.52 -1.8
3,848,185 + AO353_17420 0.56 +1.0
3,848,185 + AO353_17420 0.56 +0.8
3,848,185 + AO353_17420 0.56 -0.0
3,848,185 + AO353_17420 0.56 +1.4
3,848,186 - AO353_17420 0.56 -0.0
3,848,186 - AO353_17420 0.56 +1.3
3,848,200 + AO353_17420 0.57 -0.3
3,848,200 + AO353_17420 0.57 +0.5
3,848,201 - AO353_17420 0.58 +0.6
3,848,201 - AO353_17420 0.58 +1.6

Or see this region's nucleotide sequence