Experiment: Thallium(I) acetate 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_17195 and AO353_17200 overlap by 1 nucleotides AO353_17200 and AO353_17205 overlap by 1 nucleotides AO353_17205 and AO353_17210 are separated by 39 nucleotides AO353_17210 and AO353_17215 are separated by 1 nucleotides
AO353_17195: AO353_17195 - 3-oxoadipate CoA-transferase subunit A (EC 2.8.3.6) (from data) , at 3,802,714 to 3,803,571
_17195
AO353_17200: AO353_17200 - 3-oxoadipate CoA-transferase subunit B (EC 2.8.3.6) (from data) , at 3,803,571 to 3,804,350
_17200
AO353_17205: AO353_17205 - beta-ketoadipyl CoA thiolase, at 3,804,350 to 3,805,552
_17205
AO353_17210: AO353_17210 - protocatechuate 3,4-dioxygenase, at 3,805,592 to 3,806,296
_17210
AO353_17215: AO353_17215 - protocatechuate 3,4-dioxygenase, at 3,806,298 to 3,806,864
_17215
Position (kb)
3804
3805
3806 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3803.420 kb on - strand, within AO353_17195 at 3803.421 kb on + strand, within AO353_17195 at 3803.421 kb on + strand, within AO353_17195 at 3803.421 kb on + strand, within AO353_17195 at 3803.422 kb on - strand, within AO353_17195 at 3803.422 kb on - strand, within AO353_17195 at 3803.422 kb on - strand, within AO353_17195 at 3803.443 kb on + strand, within AO353_17195 at 3803.443 kb on + strand, within AO353_17195 at 3803.443 kb on + strand, within AO353_17195 at 3803.444 kb on - strand, within AO353_17195 at 3803.444 kb on - strand, within AO353_17195 at 3803.444 kb on - strand, within AO353_17195 at 3803.444 kb on - strand, within AO353_17195 at 3803.444 kb on - strand, within AO353_17195 at 3803.444 kb on - strand, within AO353_17195 at 3803.444 kb on - strand, within AO353_17195 at 3803.503 kb on + strand at 3803.503 kb on + strand at 3803.503 kb on + strand at 3803.503 kb on + strand at 3803.503 kb on + strand at 3803.503 kb on + strand at 3803.503 kb on + strand at 3803.503 kb on + strand at 3803.503 kb on + strand at 3803.504 kb on - strand at 3803.504 kb on - strand at 3803.504 kb on - strand at 3803.504 kb on - strand at 3803.504 kb on - strand at 3803.504 kb on - strand at 3803.504 kb on - strand at 3803.577 kb on + strand at 3803.577 kb on + strand at 3803.578 kb on - strand at 3803.578 kb on - strand at 3803.715 kb on + strand, within AO353_17200 at 3803.715 kb on + strand, within AO353_17200 at 3803.715 kb on + strand, within AO353_17200 at 3803.715 kb on + strand, within AO353_17200 at 3803.716 kb on - strand, within AO353_17200 at 3803.716 kb on - strand, within AO353_17200 at 3803.716 kb on - strand, within AO353_17200 at 3803.716 kb on - strand, within AO353_17200 at 3803.716 kb on - strand, within AO353_17200 at 3803.919 kb on + strand, within AO353_17200 at 3803.920 kb on - strand, within AO353_17200 at 3804.041 kb on + strand, within AO353_17200 at 3804.041 kb on + strand, within AO353_17200 at 3804.042 kb on - strand, within AO353_17200 at 3804.042 kb on - strand, within AO353_17200 at 3804.042 kb on - strand, within AO353_17200 at 3804.042 kb on - strand, within AO353_17200 at 3804.042 kb on - strand, within AO353_17200 at 3804.044 kb on + strand, within AO353_17200 at 3804.044 kb on + strand, within AO353_17200 at 3804.044 kb on + strand, within AO353_17200 at 3804.045 kb on - strand, within AO353_17200 at 3804.045 kb on - strand, within AO353_17200 at 3804.045 kb on - strand, within AO353_17200 at 3804.362 kb on + strand at 3804.362 kb on + strand at 3804.362 kb on + strand at 3804.362 kb on + strand at 3804.362 kb on + strand at 3804.362 kb on + strand at 3804.362 kb on + strand at 3804.363 kb on - strand at 3804.363 kb on - strand at 3804.363 kb on - strand at 3804.363 kb on - strand at 3804.363 kb on - strand at 3804.364 kb on + strand at 3804.364 kb on + strand at 3804.364 kb on + strand at 3804.365 kb on - strand at 3804.365 kb on - strand at 3804.365 kb on - strand at 3804.365 kb on - strand at 3804.365 kb on - strand at 3804.365 kb on - strand at 3804.365 kb on - strand at 3804.544 kb on + strand, within AO353_17205 at 3804.545 kb on - strand, within AO353_17205 at 3804.822 kb on - strand, within AO353_17205 at 3804.822 kb on - strand, within AO353_17205 at 3804.869 kb on + strand, within AO353_17205 at 3805.566 kb on + strand at 3805.643 kb on + strand at 3805.643 kb on + strand at 3805.643 kb on + strand at 3805.644 kb on - strand at 3805.644 kb on - strand at 3805.658 kb on + strand at 3805.726 kb on + strand, within AO353_17210 at 3805.870 kb on - strand, within AO353_17210 at 3805.904 kb on + strand, within AO353_17210 at 3805.905 kb on - strand, within AO353_17210 at 3805.992 kb on - strand, within AO353_17210 at 3806.022 kb on - strand, within AO353_17210 at 3806.063 kb on - strand, within AO353_17210 at 3806.117 kb on + strand, within AO353_17210 at 3806.117 kb on + strand, within AO353_17210 at 3806.117 kb on + strand, within AO353_17210 at 3806.117 kb on + strand, within AO353_17210 at 3806.117 kb on + strand, within AO353_17210 at 3806.117 kb on + strand, within AO353_17210 at 3806.117 kb on + strand, within AO353_17210 at 3806.117 kb on + strand, within AO353_17210 at 3806.117 kb on + strand, within AO353_17210 at 3806.117 kb on + strand, within AO353_17210 at 3806.117 kb on + strand, within AO353_17210 at 3806.118 kb on - strand, within AO353_17210 at 3806.118 kb on - strand, within AO353_17210 at 3806.118 kb on - strand, within AO353_17210 at 3806.118 kb on - strand, within AO353_17210 at 3806.118 kb on - strand, within AO353_17210 at 3806.118 kb on - strand, within AO353_17210 at 3806.118 kb on - strand, within AO353_17210 at 3806.118 kb on - strand, within AO353_17210 at 3806.118 kb on - strand, within AO353_17210 at 3806.145 kb on - strand, within AO353_17210 at 3806.145 kb on - strand, within AO353_17210 at 3806.145 kb on - strand, within AO353_17210 at 3806.156 kb on + strand, within AO353_17210 at 3806.156 kb on + strand, within AO353_17210 at 3806.156 kb on + strand, within AO353_17210 at 3806.157 kb on - strand, within AO353_17210 at 3806.157 kb on - strand, within AO353_17210 at 3806.157 kb on - strand, within AO353_17210 at 3806.157 kb on - strand, within AO353_17210 at 3806.174 kb on - strand, within AO353_17210 at 3806.232 kb on - strand at 3806.232 kb on - strand at 3806.294 kb on + strand at 3806.294 kb on + strand at 3806.294 kb on + strand at 3806.295 kb on - strand at 3806.295 kb on - strand at 3806.295 kb on - strand at 3806.295 kb on - strand at 3806.295 kb on - strand at 3806.295 kb on - strand at 3806.295 kb on - strand at 3806.295 kb on - strand at 3806.295 kb on - strand at 3806.295 kb on - strand at 3806.295 kb on - strand at 3806.337 kb on + strand at 3806.337 kb on + strand at 3806.337 kb on + strand at 3806.340 kb on + strand at 3806.340 kb on + strand at 3806.341 kb on - strand at 3806.341 kb on - strand at 3806.341 kb on - strand at 3806.341 kb on - strand at 3806.341 kb on - strand at 3806.496 kb on + strand, within AO353_17215 at 3806.496 kb on + strand, within AO353_17215 at 3806.496 kb on + strand, within AO353_17215 at 3806.496 kb on + strand, within AO353_17215 at 3806.496 kb on + strand, within AO353_17215 at 3806.496 kb on + strand, within AO353_17215 at 3806.496 kb on + strand, within AO353_17215 at 3806.496 kb on + strand, within AO353_17215 at 3806.496 kb on + strand, within AO353_17215 at 3806.497 kb on - strand, within AO353_17215 at 3806.497 kb on - strand, within AO353_17215 at 3806.497 kb on - strand, within AO353_17215 at 3806.497 kb on - strand, within AO353_17215 at 3806.497 kb on - strand, within AO353_17215 at 3806.497 kb on - strand, within AO353_17215 at 3806.497 kb on - strand, within AO353_17215 at 3806.497 kb on - strand, within AO353_17215 at 3806.497 kb on - strand, within AO353_17215 at 3806.497 kb on - strand, within AO353_17215 at 3806.497 kb on - strand, within AO353_17215 at 3806.497 kb on - strand, within AO353_17215 at 3806.497 kb on - strand, within AO353_17215 at 3806.497 kb on - strand, within AO353_17215 at 3806.497 kb on - strand, within AO353_17215 at 3806.497 kb on - strand, within AO353_17215 at 3806.497 kb on - strand, within AO353_17215
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml remove 3,803,420 - AO353_17195 0.82 +1.6 3,803,421 + AO353_17195 0.82 +1.0 3,803,421 + AO353_17195 0.82 -0.0 3,803,421 + AO353_17195 0.82 -1.6 3,803,422 - AO353_17195 0.83 -0.0 3,803,422 - AO353_17195 0.83 -1.6 3,803,422 - AO353_17195 0.83 -1.6 3,803,443 + AO353_17195 0.85 -0.0 3,803,443 + AO353_17195 0.85 +1.4 3,803,443 + AO353_17195 0.85 -1.0 3,803,444 - AO353_17195 0.85 +0.8 3,803,444 - AO353_17195 0.85 +1.3 3,803,444 - AO353_17195 0.85 +0.4 3,803,444 - AO353_17195 0.85 +0.4 3,803,444 - AO353_17195 0.85 -1.0 3,803,444 - AO353_17195 0.85 +1.0 3,803,444 - AO353_17195 0.85 +1.2 3,803,503 + -0.0 3,803,503 + -0.9 3,803,503 + +0.9 3,803,503 + -0.0 3,803,503 + -1.0 3,803,503 + +0.7 3,803,503 + -0.6 3,803,503 + +0.4 3,803,503 + -0.9 3,803,504 - -2.3 3,803,504 - +2.0 3,803,504 - +0.3 3,803,504 - -1.6 3,803,504 - -0.0 3,803,504 - +2.0 3,803,504 - +0.6 3,803,577 + -0.4 3,803,577 + -0.2 3,803,578 - +0.2 3,803,578 - +2.0 3,803,715 + AO353_17200 0.18 -0.0 3,803,715 + AO353_17200 0.18 +1.6 3,803,715 + AO353_17200 0.18 -0.7 3,803,715 + AO353_17200 0.18 -0.4 3,803,716 - AO353_17200 0.19 +1.0 3,803,716 - AO353_17200 0.19 -1.0 3,803,716 - AO353_17200 0.19 -0.4 3,803,716 - AO353_17200 0.19 -0.4 3,803,716 - AO353_17200 0.19 +0.6 3,803,919 + AO353_17200 0.45 +0.2 3,803,920 - AO353_17200 0.45 -1.6 3,804,041 + AO353_17200 0.60 -0.6 3,804,041 + AO353_17200 0.60 -0.0 3,804,042 - AO353_17200 0.60 +0.7 3,804,042 - AO353_17200 0.60 +1.6 3,804,042 - AO353_17200 0.60 +0.7 3,804,042 - AO353_17200 0.60 +0.3 3,804,042 - AO353_17200 0.60 -0.0 3,804,044 + AO353_17200 0.61 +0.7 3,804,044 + AO353_17200 0.61 +0.7 3,804,044 + AO353_17200 0.61 +1.2 3,804,045 - AO353_17200 0.61 +0.7 3,804,045 - AO353_17200 0.61 +1.0 3,804,045 - AO353_17200 0.61 -1.6 3,804,362 + +1.3 3,804,362 + -0.0 3,804,362 + -1.3 3,804,362 + -0.0 3,804,362 + -0.0 3,804,362 + +1.6 3,804,362 + -1.0 3,804,363 - +1.6 3,804,363 - +0.3 3,804,363 - +0.9 3,804,363 - +1.0 3,804,363 - +2.3 3,804,364 + -1.3 3,804,364 + -1.3 3,804,364 + -0.2 3,804,365 - +1.7 3,804,365 - +0.7 3,804,365 - -1.0 3,804,365 - +0.7 3,804,365 - -1.6 3,804,365 - -2.0 3,804,365 - +1.4 3,804,544 + AO353_17205 0.16 -0.2 3,804,545 - AO353_17205 0.16 +1.0 3,804,822 - AO353_17205 0.39 +0.6 3,804,822 - AO353_17205 0.39 +0.7 3,804,869 + AO353_17205 0.43 +0.4 3,805,566 + +1.0 3,805,643 + +0.5 3,805,643 + +1.0 3,805,643 + -2.0 3,805,644 - +0.8 3,805,644 - -1.0 3,805,658 + +0.6 3,805,726 + AO353_17210 0.19 -0.6 3,805,870 - AO353_17210 0.39 +0.4 3,805,904 + AO353_17210 0.44 +1.3 3,805,905 - AO353_17210 0.44 -0.6 3,805,992 - AO353_17210 0.57 +1.6 3,806,022 - AO353_17210 0.61 +1.6 3,806,063 - AO353_17210 0.67 -0.1 3,806,117 + AO353_17210 0.74 -1.8 3,806,117 + AO353_17210 0.74 -2.3 3,806,117 + AO353_17210 0.74 +1.0 3,806,117 + AO353_17210 0.74 +1.0 3,806,117 + AO353_17210 0.74 +0.4 3,806,117 + AO353_17210 0.74 -0.3 3,806,117 + AO353_17210 0.74 +1.3 3,806,117 + AO353_17210 0.74 -0.5 3,806,117 + AO353_17210 0.74 -0.0 3,806,117 + AO353_17210 0.74 -0.5 3,806,117 + AO353_17210 0.74 +1.3 3,806,118 - AO353_17210 0.75 +0.7 3,806,118 - AO353_17210 0.75 -0.0 3,806,118 - AO353_17210 0.75 +1.0 3,806,118 - AO353_17210 0.75 -2.0 3,806,118 - AO353_17210 0.75 +2.6 3,806,118 - AO353_17210 0.75 -0.0 3,806,118 - AO353_17210 0.75 +1.3 3,806,118 - AO353_17210 0.75 +1.4 3,806,118 - AO353_17210 0.75 -0.0 3,806,145 - AO353_17210 0.78 -0.0 3,806,145 - AO353_17210 0.78 -0.8 3,806,145 - AO353_17210 0.78 +1.3 3,806,156 + AO353_17210 0.80 -0.3 3,806,156 + AO353_17210 0.80 -0.0 3,806,156 + AO353_17210 0.80 -0.0 3,806,157 - AO353_17210 0.80 +0.4 3,806,157 - AO353_17210 0.80 +0.3 3,806,157 - AO353_17210 0.80 +0.6 3,806,157 - AO353_17210 0.80 +2.6 3,806,174 - AO353_17210 0.83 -0.0 3,806,232 - +0.9 3,806,232 - +0.2 3,806,294 + +1.1 3,806,294 + -0.5 3,806,294 + +0.4 3,806,295 - -0.0 3,806,295 - +1.0 3,806,295 - -1.6 3,806,295 - +1.0 3,806,295 - +1.6 3,806,295 - -0.6 3,806,295 - -0.3 3,806,295 - +0.7 3,806,295 - +1.0 3,806,295 - -2.6 3,806,295 - +1.0 3,806,337 + +0.4 3,806,337 + +0.7 3,806,337 + -0.0 3,806,340 + +0.4 3,806,340 + -0.3 3,806,341 - +0.5 3,806,341 - +0.7 3,806,341 - -0.0 3,806,341 - +1.2 3,806,341 - -1.4 3,806,496 + AO353_17215 0.35 -0.0 3,806,496 + AO353_17215 0.35 +0.6 3,806,496 + AO353_17215 0.35 -0.0 3,806,496 + AO353_17215 0.35 -1.0 3,806,496 + AO353_17215 0.35 +0.3 3,806,496 + AO353_17215 0.35 -1.2 3,806,496 + AO353_17215 0.35 +0.4 3,806,496 + AO353_17215 0.35 -0.0 3,806,496 + AO353_17215 0.35 +1.2 3,806,497 - AO353_17215 0.35 -1.0 3,806,497 - AO353_17215 0.35 +2.0 3,806,497 - AO353_17215 0.35 -0.2 3,806,497 - AO353_17215 0.35 -0.6 3,806,497 - AO353_17215 0.35 -0.0 3,806,497 - AO353_17215 0.35 -1.6 3,806,497 - AO353_17215 0.35 +0.3 3,806,497 - AO353_17215 0.35 +1.3 3,806,497 - AO353_17215 0.35 +0.3 3,806,497 - AO353_17215 0.35 +0.5 3,806,497 - AO353_17215 0.35 -0.4 3,806,497 - AO353_17215 0.35 -0.3 3,806,497 - AO353_17215 0.35 -0.0 3,806,497 - AO353_17215 0.35 -1.0 3,806,497 - AO353_17215 0.35 -0.2 3,806,497 - AO353_17215 0.35 +2.0 3,806,497 - AO353_17215 0.35 +1.4
Or see this region's nucleotide sequence