Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_17060

Experiment: Thallium(I) acetate 0.008 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_17055 and AO353_17060 are separated by 283 nucleotidesAO353_17060 and AO353_17065 are separated by 115 nucleotides AO353_17055: AO353_17055 - sodium:proton antiporter, at 3,769,963 to 3,771,150 _17055 AO353_17060: AO353_17060 - cysteine synthase, at 3,771,434 to 3,772,528 _17060 AO353_17065: AO353_17065 - hypothetical protein, at 3,772,644 to 3,774,257 _17065 Position (kb) 3771 3772 3773Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3771.166 kb on - strandat 3771.166 kb on - strandat 3771.166 kb on - strandat 3771.166 kb on - strandat 3771.166 kb on - strandat 3771.166 kb on - strandat 3771.166 kb on - strandat 3771.280 kb on - strandat 3771.311 kb on + strandat 3771.311 kb on + strandat 3771.312 kb on - strandat 3771.322 kb on + strandat 3771.323 kb on - strandat 3771.323 kb on - strandat 3771.323 kb on - strandat 3771.338 kb on + strandat 3771.339 kb on - strandat 3771.403 kb on + strandat 3771.409 kb on + strandat 3771.409 kb on + strandat 3771.505 kb on + strandat 3771.554 kb on + strand, within AO353_17060at 3771.554 kb on + strand, within AO353_17060at 3771.554 kb on + strand, within AO353_17060at 3771.554 kb on + strand, within AO353_17060at 3771.554 kb on + strand, within AO353_17060at 3771.554 kb on + strand, within AO353_17060at 3771.555 kb on - strand, within AO353_17060at 3771.623 kb on + strand, within AO353_17060at 3771.634 kb on + strand, within AO353_17060at 3771.635 kb on - strand, within AO353_17060at 3771.635 kb on - strand, within AO353_17060at 3771.635 kb on - strand, within AO353_17060at 3771.704 kb on + strand, within AO353_17060at 3771.705 kb on - strand, within AO353_17060at 3771.705 kb on - strand, within AO353_17060at 3771.705 kb on - strand, within AO353_17060at 3771.705 kb on - strand, within AO353_17060at 3771.788 kb on + strand, within AO353_17060at 3771.788 kb on + strand, within AO353_17060at 3771.788 kb on + strand, within AO353_17060at 3771.789 kb on - strand, within AO353_17060at 3771.789 kb on - strand, within AO353_17060at 3771.789 kb on - strand, within AO353_17060at 3771.789 kb on - strand, within AO353_17060at 3771.830 kb on + strand, within AO353_17060at 3771.831 kb on - strand, within AO353_17060at 3771.890 kb on + strand, within AO353_17060at 3771.890 kb on + strand, within AO353_17060at 3771.890 kb on + strand, within AO353_17060at 3771.890 kb on + strand, within AO353_17060at 3771.890 kb on + strand, within AO353_17060at 3771.890 kb on + strand, within AO353_17060at 3771.891 kb on - strand, within AO353_17060at 3771.891 kb on - strand, within AO353_17060at 3771.891 kb on - strand, within AO353_17060at 3772.103 kb on + strand, within AO353_17060at 3772.103 kb on + strand, within AO353_17060at 3772.104 kb on - strand, within AO353_17060at 3772.104 kb on - strand, within AO353_17060at 3772.106 kb on + strand, within AO353_17060at 3772.107 kb on - strand, within AO353_17060at 3772.107 kb on - strand, within AO353_17060at 3772.107 kb on - strand, within AO353_17060at 3772.253 kb on + strand, within AO353_17060at 3772.253 kb on + strand, within AO353_17060at 3772.253 kb on + strand, within AO353_17060at 3772.254 kb on - strand, within AO353_17060at 3772.254 kb on - strand, within AO353_17060at 3772.254 kb on - strand, within AO353_17060at 3772.254 kb on - strand, within AO353_17060at 3772.254 kb on - strand, within AO353_17060at 3772.254 kb on - strand, within AO353_17060at 3772.254 kb on - strand, within AO353_17060at 3772.254 kb on - strand, within AO353_17060at 3772.406 kb on + strand, within AO353_17060at 3772.406 kb on + strand, within AO353_17060at 3772.406 kb on + strand, within AO353_17060at 3772.406 kb on + strand, within AO353_17060at 3772.406 kb on + strand, within AO353_17060at 3772.406 kb on + strand, within AO353_17060at 3772.407 kb on - strand, within AO353_17060at 3772.407 kb on - strand, within AO353_17060at 3772.407 kb on - strand, within AO353_17060at 3772.407 kb on - strand, within AO353_17060at 3772.407 kb on - strand, within AO353_17060at 3772.407 kb on - strand, within AO353_17060at 3772.407 kb on - strandat 3772.409 kb on + strand, within AO353_17060at 3772.409 kb on + strand, within AO353_17060at 3772.409 kb on + strand, within AO353_17060at 3772.410 kb on - strand, within AO353_17060at 3772.410 kb on - strand, within AO353_17060at 3772.439 kb on + strandat 3772.526 kb on + strandat 3772.526 kb on + strandat 3772.526 kb on + strandat 3772.527 kb on - strandat 3772.576 kb on + strandat 3772.577 kb on - strandat 3772.632 kb on - strandat 3772.632 kb on - strandat 3772.664 kb on + strandat 3772.665 kb on - strandat 3772.963 kb on + strand, within AO353_17065at 3772.963 kb on + strand, within AO353_17065at 3772.963 kb on + strand, within AO353_17065at 3772.963 kb on + strand, within AO353_17065at 3772.964 kb on - strand, within AO353_17065at 3772.964 kb on - strand, within AO353_17065at 3772.964 kb on - strand, within AO353_17065at 3772.964 kb on - strand, within AO353_17065at 3772.964 kb on - strand, within AO353_17065at 3773.041 kb on + strand, within AO353_17065at 3773.041 kb on + strand, within AO353_17065at 3773.041 kb on + strand, within AO353_17065at 3773.042 kb on - strand, within AO353_17065at 3773.042 kb on - strand, within AO353_17065at 3773.042 kb on - strand, within AO353_17065at 3773.042 kb on - strand, within AO353_17065at 3773.042 kb on - strand, within AO353_17065at 3773.165 kb on + strand, within AO353_17065at 3773.182 kb on + strand, within AO353_17065at 3773.267 kb on - strand, within AO353_17065at 3773.305 kb on + strand, within AO353_17065at 3773.305 kb on + strand, within AO353_17065at 3773.306 kb on - strand, within AO353_17065at 3773.306 kb on - strand, within AO353_17065at 3773.338 kb on + strand, within AO353_17065at 3773.338 kb on + strand, within AO353_17065at 3773.339 kb on - strand, within AO353_17065at 3773.339 kb on - strand, within AO353_17065at 3773.339 kb on - strand, within AO353_17065at 3773.339 kb on - strand, within AO353_17065at 3773.339 kb on - strand, within AO353_17065

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
remove
3,771,166 - +0.0
3,771,166 - +0.3
3,771,166 - +1.0
3,771,166 - +2.3
3,771,166 - +0.0
3,771,166 - +1.2
3,771,166 - -2.3
3,771,280 - +0.0
3,771,311 + -0.3
3,771,311 + -0.6
3,771,312 - +1.0
3,771,322 + +0.6
3,771,323 - +0.7
3,771,323 - +0.0
3,771,323 - -1.0
3,771,338 + -0.4
3,771,339 - +1.0
3,771,403 + +0.0
3,771,409 + -1.3
3,771,409 + +1.3
3,771,505 + +0.0
3,771,554 + AO353_17060 0.11 +0.4
3,771,554 + AO353_17060 0.11 -0.2
3,771,554 + AO353_17060 0.11 -0.3
3,771,554 + AO353_17060 0.11 +1.6
3,771,554 + AO353_17060 0.11 +0.2
3,771,554 + AO353_17060 0.11 +0.0
3,771,555 - AO353_17060 0.11 +0.3
3,771,623 + AO353_17060 0.17 -1.3
3,771,634 + AO353_17060 0.18 +2.0
3,771,635 - AO353_17060 0.18 +1.0
3,771,635 - AO353_17060 0.18 +0.0
3,771,635 - AO353_17060 0.18 +1.0
3,771,704 + AO353_17060 0.25 +1.0
3,771,705 - AO353_17060 0.25 -2.3
3,771,705 - AO353_17060 0.25 +0.0
3,771,705 - AO353_17060 0.25 -2.8
3,771,705 - AO353_17060 0.25 -1.6
3,771,788 + AO353_17060 0.32 -0.3
3,771,788 + AO353_17060 0.32 +1.6
3,771,788 + AO353_17060 0.32 +0.0
3,771,789 - AO353_17060 0.32 -2.3
3,771,789 - AO353_17060 0.32 +0.6
3,771,789 - AO353_17060 0.32 +1.0
3,771,789 - AO353_17060 0.32 -0.3
3,771,830 + AO353_17060 0.36 +0.0
3,771,831 - AO353_17060 0.36 +0.0
3,771,890 + AO353_17060 0.42 +1.6
3,771,890 + AO353_17060 0.42 +0.8
3,771,890 + AO353_17060 0.42 +0.5
3,771,890 + AO353_17060 0.42 +1.0
3,771,890 + AO353_17060 0.42 -0.4
3,771,890 + AO353_17060 0.42 +0.6
3,771,891 - AO353_17060 0.42 -1.6
3,771,891 - AO353_17060 0.42 -1.0
3,771,891 - AO353_17060 0.42 +0.5
3,772,103 + AO353_17060 0.61 +2.0
3,772,103 + AO353_17060 0.61 +0.1
3,772,104 - AO353_17060 0.61 +1.2
3,772,104 - AO353_17060 0.61 +0.8
3,772,106 + AO353_17060 0.61 +1.0
3,772,107 - AO353_17060 0.61 +1.6
3,772,107 - AO353_17060 0.61 +0.6
3,772,107 - AO353_17060 0.61 +0.0
3,772,253 + AO353_17060 0.75 -0.6
3,772,253 + AO353_17060 0.75 +1.0
3,772,253 + AO353_17060 0.75 +1.7
3,772,254 - AO353_17060 0.75 +0.0
3,772,254 - AO353_17060 0.75 +1.0
3,772,254 - AO353_17060 0.75 +0.0
3,772,254 - AO353_17060 0.75 -0.9
3,772,254 - AO353_17060 0.75 -1.6
3,772,254 - AO353_17060 0.75 -0.4
3,772,254 - AO353_17060 0.75 +1.0
3,772,254 - AO353_17060 0.75 +2.0
3,772,406 + AO353_17060 0.89 -1.6
3,772,406 + AO353_17060 0.89 +3.3
3,772,406 + AO353_17060 0.89 -2.6
3,772,406 + AO353_17060 0.89 -1.6
3,772,406 + AO353_17060 0.89 -1.0
3,772,406 + AO353_17060 0.89 +0.0
3,772,407 - AO353_17060 0.89 +1.3
3,772,407 - AO353_17060 0.89 +0.0
3,772,407 - AO353_17060 0.89 -0.2
3,772,407 - AO353_17060 0.89 -0.5
3,772,407 - AO353_17060 0.89 +0.0
3,772,407 - AO353_17060 0.89 +1.6
3,772,407 - +1.0
3,772,409 + AO353_17060 0.89 +0.0
3,772,409 + AO353_17060 0.89 +1.3
3,772,409 + AO353_17060 0.89 +0.6
3,772,410 - AO353_17060 0.89 +0.8
3,772,410 - AO353_17060 0.89 -1.3
3,772,439 + -1.0
3,772,526 + +0.8
3,772,526 + -2.0
3,772,526 + +0.0
3,772,527 - +0.0
3,772,576 + +0.9
3,772,577 - +0.0
3,772,632 - +1.6
3,772,632 - +0.7
3,772,664 + +0.0
3,772,665 - -1.9
3,772,963 + AO353_17065 0.20 -0.6
3,772,963 + AO353_17065 0.20 -0.6
3,772,963 + AO353_17065 0.20 -2.0
3,772,963 + AO353_17065 0.20 +2.0
3,772,964 - AO353_17065 0.20 -0.6
3,772,964 - AO353_17065 0.20 -1.0
3,772,964 - AO353_17065 0.20 +0.0
3,772,964 - AO353_17065 0.20 -1.0
3,772,964 - AO353_17065 0.20 +0.3
3,773,041 + AO353_17065 0.25 -0.3
3,773,041 + AO353_17065 0.25 +0.6
3,773,041 + AO353_17065 0.25 +0.4
3,773,042 - AO353_17065 0.25 -0.6
3,773,042 - AO353_17065 0.25 -2.0
3,773,042 - AO353_17065 0.25 +2.0
3,773,042 - AO353_17065 0.25 -1.0
3,773,042 - AO353_17065 0.25 +0.4
3,773,165 + AO353_17065 0.32 -1.0
3,773,182 + AO353_17065 0.33 +1.6
3,773,267 - AO353_17065 0.39 -0.3
3,773,305 + AO353_17065 0.41 +0.2
3,773,305 + AO353_17065 0.41 +2.0
3,773,306 - AO353_17065 0.41 +0.4
3,773,306 - AO353_17065 0.41 +1.0
3,773,338 + AO353_17065 0.43 +1.6
3,773,338 + AO353_17065 0.43 +0.2
3,773,339 - AO353_17065 0.43 +0.3
3,773,339 - AO353_17065 0.43 +2.2
3,773,339 - AO353_17065 0.43 +0.6
3,773,339 - AO353_17065 0.43 -2.3
3,773,339 - AO353_17065 0.43 -0.4

Or see this region's nucleotide sequence