Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_16850

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_16845 and AO353_16850 are separated by 136 nucleotidesAO353_16850 and AO353_16855 are separated by 111 nucleotides AO353_16845: AO353_16845 - LysR family transcriptional regulator, at 3,727,662 to 3,728,588 _16845 AO353_16850: AO353_16850 - ferredoxin-NADP reductase, at 3,728,725 to 3,729,504 _16850 AO353_16855: AO353_16855 - tRNA-Thr(GGU) m(6)t(6)A37 methyltransferase TsaA, at 3,729,616 to 3,730,314 _16855 Position (kb) 3728 3729 3730Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3727.759 kb on + strand, within AO353_16845at 3727.759 kb on + strand, within AO353_16845at 3727.759 kb on + strand, within AO353_16845at 3727.759 kb on + strand, within AO353_16845at 3727.759 kb on + strand, within AO353_16845at 3727.759 kb on + strand, within AO353_16845at 3727.759 kb on + strand, within AO353_16845at 3727.760 kb on - strand, within AO353_16845at 3727.760 kb on - strand, within AO353_16845at 3727.769 kb on + strand, within AO353_16845at 3727.770 kb on - strand, within AO353_16845at 3727.783 kb on + strand, within AO353_16845at 3727.783 kb on + strand, within AO353_16845at 3727.869 kb on + strand, within AO353_16845at 3727.869 kb on + strand, within AO353_16845at 3727.870 kb on - strand, within AO353_16845at 3727.871 kb on + strand, within AO353_16845at 3727.871 kb on + strand, within AO353_16845at 3727.871 kb on + strand, within AO353_16845at 3727.871 kb on + strand, within AO353_16845at 3727.871 kb on + strand, within AO353_16845at 3727.871 kb on + strand, within AO353_16845at 3727.871 kb on + strand, within AO353_16845at 3727.871 kb on + strand, within AO353_16845at 3727.871 kb on + strand, within AO353_16845at 3727.871 kb on + strand, within AO353_16845at 3727.871 kb on + strand, within AO353_16845at 3727.871 kb on + strand, within AO353_16845at 3727.871 kb on + strand, within AO353_16845at 3727.872 kb on - strand, within AO353_16845at 3727.872 kb on - strand, within AO353_16845at 3727.872 kb on - strand, within AO353_16845at 3727.872 kb on - strand, within AO353_16845at 3727.872 kb on - strand, within AO353_16845at 3727.872 kb on - strand, within AO353_16845at 3727.872 kb on - strand, within AO353_16845at 3727.872 kb on - strand, within AO353_16845at 3727.872 kb on - strand, within AO353_16845at 3727.872 kb on - strand, within AO353_16845at 3727.872 kb on - strand, within AO353_16845at 3727.872 kb on - strand, within AO353_16845at 3727.872 kb on - strand, within AO353_16845at 3727.872 kb on - strand, within AO353_16845at 3727.940 kb on + strand, within AO353_16845at 3727.941 kb on - strand, within AO353_16845at 3727.941 kb on - strand, within AO353_16845at 3728.118 kb on + strand, within AO353_16845at 3728.118 kb on + strand, within AO353_16845at 3728.118 kb on + strand, within AO353_16845at 3728.118 kb on + strand, within AO353_16845at 3728.118 kb on + strand, within AO353_16845at 3728.119 kb on - strand, within AO353_16845at 3728.119 kb on - strand, within AO353_16845at 3728.119 kb on - strand, within AO353_16845at 3728.119 kb on - strand, within AO353_16845at 3728.155 kb on - strand, within AO353_16845at 3728.173 kb on + strand, within AO353_16845at 3728.278 kb on + strand, within AO353_16845at 3728.278 kb on + strand, within AO353_16845at 3728.279 kb on - strand, within AO353_16845at 3728.574 kb on + strandat 3728.574 kb on + strandat 3728.574 kb on + strandat 3728.579 kb on + strandat 3728.588 kb on + strandat 3728.592 kb on + strandat 3728.634 kb on + strandat 3728.634 kb on + strandat 3728.649 kb on + strandat 3728.649 kb on + strandat 3728.649 kb on + strandat 3729.502 kb on + strandat 3729.502 kb on + strandat 3729.502 kb on + strandat 3729.502 kb on + strandat 3729.502 kb on + strandat 3729.502 kb on + strandat 3729.502 kb on + strandat 3729.502 kb on + strandat 3729.502 kb on + strandat 3729.503 kb on - strandat 3729.503 kb on - strandat 3729.503 kb on - strandat 3729.503 kb on - strandat 3729.503 kb on - strandat 3729.503 kb on - strandat 3729.503 kb on - strandat 3729.679 kb on + strandat 3729.679 kb on + strandat 3729.679 kb on + strandat 3729.679 kb on + strandat 3729.679 kb on + strandat 3729.679 kb on + strandat 3729.679 kb on + strandat 3729.680 kb on - strandat 3729.680 kb on - strandat 3729.680 kb on - strandat 3729.680 kb on - strandat 3729.707 kb on + strand, within AO353_16855at 3729.708 kb on - strand, within AO353_16855at 3729.810 kb on + strand, within AO353_16855at 3729.810 kb on + strand, within AO353_16855at 3729.811 kb on - strand, within AO353_16855at 3729.917 kb on + strand, within AO353_16855at 3729.917 kb on + strand, within AO353_16855at 3729.918 kb on - strand, within AO353_16855at 3729.918 kb on - strand, within AO353_16855at 3729.942 kb on + strand, within AO353_16855at 3729.942 kb on + strand, within AO353_16855at 3730.071 kb on + strand, within AO353_16855at 3730.307 kb on + strandat 3730.307 kb on + strandat 3730.307 kb on + strandat 3730.307 kb on + strandat 3730.307 kb on + strandat 3730.307 kb on + strandat 3730.307 kb on + strandat 3730.307 kb on + strandat 3730.308 kb on - strandat 3730.308 kb on - strandat 3730.308 kb on - strandat 3730.308 kb on - strandat 3730.308 kb on - strandat 3730.308 kb on - strandat 3730.308 kb on - strandat 3730.308 kb on - strandat 3730.308 kb on - strandat 3730.308 kb on - strandat 3730.308 kb on - strandat 3730.350 kb on + strandat 3730.440 kb on + strandat 3730.440 kb on + strandat 3730.440 kb on + strandat 3730.440 kb on + strandat 3730.440 kb on + strandat 3730.440 kb on + strandat 3730.440 kb on + strandat 3730.440 kb on + strandat 3730.440 kb on + strandat 3730.441 kb on - strandat 3730.441 kb on - strandat 3730.441 kb on - strandat 3730.441 kb on - strandat 3730.441 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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3,727,759 + AO353_16845 0.10 +1.1
3,727,759 + AO353_16845 0.10 +0.3
3,727,759 + AO353_16845 0.10 +0.5
3,727,759 + AO353_16845 0.10 -1.4
3,727,759 + AO353_16845 0.10 +2.3
3,727,759 + AO353_16845 0.10 +1.2
3,727,759 + AO353_16845 0.10 +0.6
3,727,760 - AO353_16845 0.11 +1.3
3,727,760 - AO353_16845 0.11 -0.6
3,727,769 + AO353_16845 0.12 +0.3
3,727,770 - AO353_16845 0.12 +1.0
3,727,783 + AO353_16845 0.13 +1.8
3,727,783 + AO353_16845 0.13 +0.3
3,727,869 + AO353_16845 0.22 +0.0
3,727,869 + AO353_16845 0.22 +1.8
3,727,870 - AO353_16845 0.22 +1.7
3,727,871 + AO353_16845 0.23 +2.0
3,727,871 + AO353_16845 0.23 +0.9
3,727,871 + AO353_16845 0.23 +2.0
3,727,871 + AO353_16845 0.23 -1.0
3,727,871 + AO353_16845 0.23 +0.0
3,727,871 + AO353_16845 0.23 -0.7
3,727,871 + AO353_16845 0.23 +0.6
3,727,871 + AO353_16845 0.23 -0.6
3,727,871 + AO353_16845 0.23 -0.3
3,727,871 + AO353_16845 0.23 +1.6
3,727,871 + AO353_16845 0.23 -1.0
3,727,871 + AO353_16845 0.23 +2.3
3,727,871 + AO353_16845 0.23 +3.0
3,727,872 - AO353_16845 0.23 +0.9
3,727,872 - AO353_16845 0.23 +3.3
3,727,872 - AO353_16845 0.23 +1.3
3,727,872 - AO353_16845 0.23 +1.0
3,727,872 - AO353_16845 0.23 +0.0
3,727,872 - AO353_16845 0.23 +1.5
3,727,872 - AO353_16845 0.23 +1.0
3,727,872 - AO353_16845 0.23 +1.6
3,727,872 - AO353_16845 0.23 +1.3
3,727,872 - AO353_16845 0.23 +0.3
3,727,872 - AO353_16845 0.23 +3.3
3,727,872 - AO353_16845 0.23 +0.6
3,727,872 - AO353_16845 0.23 +0.8
3,727,872 - AO353_16845 0.23 +1.0
3,727,940 + AO353_16845 0.30 +1.0
3,727,941 - AO353_16845 0.30 +1.4
3,727,941 - AO353_16845 0.30 -1.1
3,728,118 + AO353_16845 0.49 +0.6
3,728,118 + AO353_16845 0.49 +0.8
3,728,118 + AO353_16845 0.49 +0.7
3,728,118 + AO353_16845 0.49 +1.1
3,728,118 + AO353_16845 0.49 +0.3
3,728,119 - AO353_16845 0.49 +0.0
3,728,119 - AO353_16845 0.49 +1.2
3,728,119 - AO353_16845 0.49 +2.0
3,728,119 - AO353_16845 0.49 -1.6
3,728,155 - AO353_16845 0.53 +1.3
3,728,173 + AO353_16845 0.55 -0.4
3,728,278 + AO353_16845 0.66 +0.0
3,728,278 + AO353_16845 0.66 +0.0
3,728,279 - AO353_16845 0.67 -0.4
3,728,574 + +0.0
3,728,574 + +1.8
3,728,574 + -1.0
3,728,579 + +0.7
3,728,588 + +1.6
3,728,592 + +0.0
3,728,634 + +1.6
3,728,634 + +0.6
3,728,649 + +1.6
3,728,649 + -1.2
3,728,649 + +0.0
3,729,502 + -0.3
3,729,502 + +1.0
3,729,502 + +1.6
3,729,502 + +0.2
3,729,502 + +1.2
3,729,502 + -0.2
3,729,502 + -0.1
3,729,502 + -3.0
3,729,502 + -0.8
3,729,503 - +0.6
3,729,503 - -0.2
3,729,503 - +0.4
3,729,503 - -1.6
3,729,503 - +0.0
3,729,503 - +1.0
3,729,503 - -0.4
3,729,679 + -0.1
3,729,679 + +0.5
3,729,679 + +0.8
3,729,679 + +1.6
3,729,679 + +1.0
3,729,679 + -1.6
3,729,679 + -2.0
3,729,680 - +1.0
3,729,680 - -0.4
3,729,680 - +1.0
3,729,680 - +0.0
3,729,707 + AO353_16855 0.13 +0.0
3,729,708 - AO353_16855 0.13 +0.0
3,729,810 + AO353_16855 0.28 -2.0
3,729,810 + AO353_16855 0.28 +0.6
3,729,811 - AO353_16855 0.28 +0.3
3,729,917 + AO353_16855 0.43 +0.0
3,729,917 + AO353_16855 0.43 +0.0
3,729,918 - AO353_16855 0.43 -2.0
3,729,918 - AO353_16855 0.43 +0.0
3,729,942 + AO353_16855 0.47 -0.2
3,729,942 + AO353_16855 0.47 +0.0
3,730,071 + AO353_16855 0.65 +1.8
3,730,307 + +1.6
3,730,307 + +0.4
3,730,307 + +0.7
3,730,307 + -1.3
3,730,307 + +1.0
3,730,307 + +1.4
3,730,307 + +1.6
3,730,307 + -1.4
3,730,308 - -2.0
3,730,308 - +0.0
3,730,308 - +1.2
3,730,308 - +1.3
3,730,308 - +0.0
3,730,308 - -0.2
3,730,308 - +0.0
3,730,308 - +0.6
3,730,308 - +1.0
3,730,308 - +0.0
3,730,308 - -0.4
3,730,350 + +0.6
3,730,440 + -1.0
3,730,440 + +2.3
3,730,440 + -1.6
3,730,440 + +2.5
3,730,440 + -1.0
3,730,440 + +1.3
3,730,440 + +0.0
3,730,440 + +1.0
3,730,440 + +0.6
3,730,441 - +0.3
3,730,441 - -1.0
3,730,441 - +0.0
3,730,441 - +0.0
3,730,441 - +1.0

Or see this region's nucleotide sequence