Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_15880

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_15875 and AO353_15880 are separated by 12 nucleotidesAO353_15880 and AO353_15885 overlap by 1 nucleotides AO353_15875: AO353_15875 - 23S rRNA (adenine(2503)-C2)-methyltransferase, at 3,502,929 to 3,504,077 _15875 AO353_15880: AO353_15880 - pilus assembly protein PilW, at 3,504,090 to 3,504,848 _15880 AO353_15885: AO353_15885 - Cro/Cl family transcriptional regulator, at 3,504,848 to 3,505,876 _15885 Position (kb) 3504 3505Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3503.117 kb on + strand, within AO353_15875at 3503.223 kb on + strand, within AO353_15875at 3503.223 kb on + strand, within AO353_15875at 3503.223 kb on + strand, within AO353_15875at 3503.369 kb on + strand, within AO353_15875at 3503.369 kb on + strand, within AO353_15875at 3503.655 kb on + strand, within AO353_15875at 3503.655 kb on + strand, within AO353_15875at 3503.655 kb on + strand, within AO353_15875at 3503.691 kb on + strand, within AO353_15875at 3503.691 kb on + strand, within AO353_15875at 3503.691 kb on + strand, within AO353_15875at 3503.733 kb on + strand, within AO353_15875at 3503.733 kb on + strand, within AO353_15875at 3503.733 kb on + strand, within AO353_15875at 3503.974 kb on + strandat 3504.012 kb on + strandat 3504.012 kb on + strandat 3504.012 kb on + strandat 3504.012 kb on + strandat 3504.012 kb on + strandat 3504.012 kb on + strandat 3504.012 kb on + strandat 3504.012 kb on + strandat 3504.012 kb on + strandat 3504.013 kb on - strandat 3504.013 kb on - strandat 3504.013 kb on - strandat 3504.014 kb on + strandat 3504.047 kb on + strandat 3504.071 kb on + strandat 3504.071 kb on + strandat 3504.071 kb on + strandat 3504.072 kb on - strandat 3504.072 kb on - strandat 3504.075 kb on + strandat 3504.075 kb on + strandat 3504.075 kb on + strandat 3504.076 kb on - strandat 3504.076 kb on - strandat 3504.076 kb on - strandat 3504.089 kb on + strandat 3504.089 kb on + strandat 3504.089 kb on + strandat 3504.089 kb on + strandat 3504.089 kb on + strandat 3504.089 kb on + strandat 3504.089 kb on + strandat 3504.089 kb on + strandat 3504.089 kb on + strandat 3504.089 kb on + strandat 3504.089 kb on + strandat 3504.090 kb on - strandat 3504.090 kb on - strandat 3504.090 kb on - strandat 3504.090 kb on - strandat 3504.090 kb on - strandat 3504.207 kb on + strand, within AO353_15880at 3504.207 kb on + strand, within AO353_15880at 3504.207 kb on + strand, within AO353_15880at 3504.207 kb on + strand, within AO353_15880at 3504.207 kb on + strand, within AO353_15880at 3504.207 kb on + strand, within AO353_15880at 3504.208 kb on - strand, within AO353_15880at 3504.208 kb on - strand, within AO353_15880at 3504.208 kb on - strand, within AO353_15880at 3504.208 kb on - strand, within AO353_15880at 3504.228 kb on + strand, within AO353_15880at 3504.228 kb on + strand, within AO353_15880at 3504.229 kb on - strand, within AO353_15880at 3504.229 kb on - strand, within AO353_15880at 3504.407 kb on + strand, within AO353_15880at 3504.420 kb on + strand, within AO353_15880at 3504.450 kb on + strand, within AO353_15880at 3504.462 kb on + strand, within AO353_15880at 3504.462 kb on + strand, within AO353_15880at 3504.462 kb on + strand, within AO353_15880at 3504.462 kb on + strand, within AO353_15880at 3504.498 kb on + strand, within AO353_15880at 3504.645 kb on + strand, within AO353_15880at 3504.660 kb on + strand, within AO353_15880at 3504.660 kb on + strand, within AO353_15880at 3504.660 kb on + strand, within AO353_15880at 3504.660 kb on + strand, within AO353_15880at 3504.660 kb on + strand, within AO353_15880at 3504.660 kb on + strandat 3504.660 kb on + strand, within AO353_15880at 3504.660 kb on + strand, within AO353_15880at 3504.660 kb on + strand, within AO353_15880at 3504.660 kb on + strand, within AO353_15880at 3504.660 kb on + strand, within AO353_15880at 3504.660 kb on + strand, within AO353_15880at 3504.660 kb on + strand, within AO353_15880at 3504.660 kb on + strand, within AO353_15880at 3504.660 kb on + strand, within AO353_15880at 3504.678 kb on + strand, within AO353_15880at 3504.681 kb on + strand, within AO353_15880at 3504.692 kb on + strand, within AO353_15880at 3504.719 kb on + strand, within AO353_15880at 3504.719 kb on + strand, within AO353_15880at 3504.719 kb on + strand, within AO353_15880at 3504.724 kb on + strand, within AO353_15880at 3504.724 kb on + strand, within AO353_15880at 3504.793 kb on + strandat 3504.804 kb on + strandat 3504.831 kb on + strandat 3504.831 kb on + strandat 3504.831 kb on + strandat 3504.831 kb on + strandat 3504.873 kb on + strandat 3505.024 kb on + strand, within AO353_15885at 3505.024 kb on + strand, within AO353_15885at 3505.024 kb on + strand, within AO353_15885at 3505.040 kb on + strand, within AO353_15885at 3505.040 kb on + strand, within AO353_15885at 3505.052 kb on + strand, within AO353_15885at 3505.052 kb on + strand, within AO353_15885at 3505.083 kb on + strand, within AO353_15885at 3505.371 kb on + strand, within AO353_15885at 3505.371 kb on + strand, within AO353_15885at 3505.372 kb on - strand, within AO353_15885at 3505.726 kb on + strand, within AO353_15885at 3505.726 kb on + strand, within AO353_15885at 3505.765 kb on + strand, within AO353_15885at 3505.765 kb on + strand, within AO353_15885at 3505.765 kb on + strand, within AO353_15885at 3505.765 kb on + strand, within AO353_15885at 3505.770 kb on + strand, within AO353_15885at 3505.805 kb on + strandat 3505.805 kb on + strandat 3505.827 kb on + strandat 3505.827 kb on + strandat 3505.827 kb on + strandat 3505.827 kb on + strandat 3505.827 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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3,503,117 + AO353_15875 0.16 +0.5
3,503,223 + AO353_15875 0.26 +0.1
3,503,223 + AO353_15875 0.26 -0.3
3,503,223 + AO353_15875 0.26 -1.1
3,503,369 + AO353_15875 0.38 +0.6
3,503,369 + AO353_15875 0.38 -2.7
3,503,655 + AO353_15875 0.63 -0.7
3,503,655 + AO353_15875 0.63 +0.1
3,503,655 + AO353_15875 0.63 +0.1
3,503,691 + AO353_15875 0.66 -0.3
3,503,691 + AO353_15875 0.66 +0.1
3,503,691 + AO353_15875 0.66 -1.9
3,503,733 + AO353_15875 0.70 +1.7
3,503,733 + AO353_15875 0.70 -0.5
3,503,733 + AO353_15875 0.70 +0.3
3,503,974 + +1.2
3,504,012 + -2.2
3,504,012 + -2.2
3,504,012 + -0.9
3,504,012 + -0.3
3,504,012 + -0.6
3,504,012 + +0.4
3,504,012 + +1.2
3,504,012 + +0.1
3,504,012 + -1.9
3,504,013 - +1.1
3,504,013 - -2.2
3,504,013 - -1.5
3,504,014 + +0.6
3,504,047 + -0.9
3,504,071 + -1.5
3,504,071 + -0.9
3,504,071 + -0.9
3,504,072 - -0.5
3,504,072 - -1.7
3,504,075 + +0.1
3,504,075 + -2.2
3,504,075 + -0.6
3,504,076 - -1.2
3,504,076 - -1.5
3,504,076 - -1.5
3,504,089 + -1.9
3,504,089 + +0.1
3,504,089 + +0.5
3,504,089 + +1.7
3,504,089 + -0.9
3,504,089 + +1.9
3,504,089 + -0.8
3,504,089 + +0.4
3,504,089 + +1.7
3,504,089 + +0.5
3,504,089 + +0.1
3,504,090 - -1.3
3,504,090 - +1.1
3,504,090 - -0.9
3,504,090 - -1.5
3,504,090 - +1.7
3,504,207 + AO353_15880 0.15 -0.9
3,504,207 + AO353_15880 0.15 +1.1
3,504,207 + AO353_15880 0.15 +0.1
3,504,207 + AO353_15880 0.15 +0.7
3,504,207 + AO353_15880 0.15 -0.9
3,504,207 + AO353_15880 0.15 +0.8
3,504,208 - AO353_15880 0.16 -1.5
3,504,208 - AO353_15880 0.16 +0.1
3,504,208 - AO353_15880 0.16 -0.7
3,504,208 - AO353_15880 0.16 -0.9
3,504,228 + AO353_15880 0.18 -1.1
3,504,228 + AO353_15880 0.18 -0.4
3,504,229 - AO353_15880 0.18 -0.9
3,504,229 - AO353_15880 0.18 -0.9
3,504,407 + AO353_15880 0.42 +0.1
3,504,420 + AO353_15880 0.43 +3.2
3,504,450 + AO353_15880 0.47 -0.5
3,504,462 + AO353_15880 0.49 +0.1
3,504,462 + AO353_15880 0.49 -0.1
3,504,462 + AO353_15880 0.49 -0.4
3,504,462 + AO353_15880 0.49 +0.1
3,504,498 + AO353_15880 0.54 -1.4
3,504,645 + AO353_15880 0.73 +0.1
3,504,660 + AO353_15880 0.75 -2.5
3,504,660 + AO353_15880 0.75 -1.1
3,504,660 + AO353_15880 0.75 -0.5
3,504,660 + AO353_15880 0.75 -0.9
3,504,660 + AO353_15880 0.75 -0.9
3,504,660 + +0.1
3,504,660 + AO353_15880 0.75 -0.6
3,504,660 + AO353_15880 0.75 -0.9
3,504,660 + AO353_15880 0.75 -0.5
3,504,660 + AO353_15880 0.75 -2.2
3,504,660 + AO353_15880 0.75 -0.3
3,504,660 + AO353_15880 0.75 +1.1
3,504,660 + AO353_15880 0.75 -1.1
3,504,660 + AO353_15880 0.75 -0.3
3,504,660 + AO353_15880 0.75 -1.7
3,504,678 + AO353_15880 0.77 -0.4
3,504,681 + AO353_15880 0.78 +0.1
3,504,692 + AO353_15880 0.79 +0.3
3,504,719 + AO353_15880 0.83 -0.5
3,504,719 + AO353_15880 0.83 +0.1
3,504,719 + AO353_15880 0.83 -0.8
3,504,724 + AO353_15880 0.84 -2.6
3,504,724 + AO353_15880 0.84 +0.6
3,504,793 + +0.8
3,504,804 + -0.5
3,504,831 + -0.9
3,504,831 + -1.5
3,504,831 + +0.3
3,504,831 + -1.5
3,504,873 + -1.5
3,505,024 + AO353_15885 0.17 +0.1
3,505,024 + AO353_15885 0.17 -0.9
3,505,024 + AO353_15885 0.17 -2.4
3,505,040 + AO353_15885 0.19 -0.9
3,505,040 + AO353_15885 0.19 -1.5
3,505,052 + AO353_15885 0.20 +0.1
3,505,052 + AO353_15885 0.20 -0.6
3,505,083 + AO353_15885 0.23 -0.9
3,505,371 + AO353_15885 0.51 +0.9
3,505,371 + AO353_15885 0.51 -1.3
3,505,372 - AO353_15885 0.51 +0.5
3,505,726 + AO353_15885 0.85 +0.1
3,505,726 + AO353_15885 0.85 -0.3
3,505,765 + AO353_15885 0.89 +1.7
3,505,765 + AO353_15885 0.89 +0.5
3,505,765 + AO353_15885 0.89 +0.3
3,505,765 + AO353_15885 0.89 +1.1
3,505,770 + AO353_15885 0.90 +0.7
3,505,805 + +0.1
3,505,805 + -0.9
3,505,827 + +0.3
3,505,827 + +0.1
3,505,827 + -0.2
3,505,827 + +0.5
3,505,827 + +1.7

Or see this region's nucleotide sequence