Experiment: Thallium(I) acetate 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_13875 and AO353_13880 are separated by 118 nucleotides AO353_13880 and AO353_13885 overlap by 14 nucleotides
AO353_13875: AO353_13875 - 3-ketoacyl-ACP reductase, at 3,081,879 to 3,083,231
_13875
AO353_13880: AO353_13880 - acetyl-CoA acetyltransferase, at 3,083,350 to 3,084,627
_13880
AO353_13885: AO353_13885 - bile acid:sodium symporter, at 3,084,614 to 3,085,642
_13885
Position (kb)
3083
3084
3085 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3082.497 kb on + strand, within AO353_13875 at 3082.497 kb on + strand, within AO353_13875 at 3082.497 kb on + strand, within AO353_13875 at 3082.497 kb on + strand, within AO353_13875 at 3082.497 kb on + strand, within AO353_13875 at 3082.497 kb on + strand, within AO353_13875 at 3082.497 kb on + strand, within AO353_13875 at 3082.498 kb on - strand, within AO353_13875 at 3082.666 kb on + strand, within AO353_13875 at 3082.666 kb on + strand, within AO353_13875 at 3082.666 kb on + strand, within AO353_13875 at 3082.666 kb on + strand, within AO353_13875 at 3082.666 kb on + strand, within AO353_13875 at 3082.666 kb on + strand, within AO353_13875 at 3082.666 kb on + strand, within AO353_13875 at 3082.666 kb on + strand, within AO353_13875 at 3082.666 kb on + strand, within AO353_13875 at 3082.666 kb on + strand, within AO353_13875 at 3082.666 kb on + strand, within AO353_13875 at 3082.666 kb on + strand, within AO353_13875 at 3082.666 kb on + strand, within AO353_13875 at 3082.666 kb on + strand, within AO353_13875 at 3082.666 kb on + strand, within AO353_13875 at 3082.666 kb on + strand, within AO353_13875 at 3082.667 kb on - strand, within AO353_13875 at 3082.667 kb on - strand, within AO353_13875 at 3082.667 kb on - strand, within AO353_13875 at 3082.667 kb on - strand, within AO353_13875 at 3082.667 kb on - strand, within AO353_13875 at 3082.667 kb on - strand, within AO353_13875 at 3082.667 kb on - strand, within AO353_13875 at 3082.667 kb on - strand, within AO353_13875 at 3082.667 kb on - strand, within AO353_13875 at 3082.667 kb on - strand, within AO353_13875 at 3082.667 kb on - strand, within AO353_13875 at 3082.667 kb on - strand, within AO353_13875 at 3082.667 kb on - strand, within AO353_13875 at 3082.667 kb on - strand, within AO353_13875 at 3082.667 kb on - strand, within AO353_13875 at 3082.667 kb on - strand, within AO353_13875 at 3082.735 kb on + strand, within AO353_13875 at 3082.735 kb on + strand, within AO353_13875 at 3082.735 kb on + strand, within AO353_13875 at 3082.735 kb on + strand, within AO353_13875 at 3082.735 kb on + strand, within AO353_13875 at 3082.735 kb on + strand, within AO353_13875 at 3082.735 kb on + strand, within AO353_13875 at 3082.735 kb on + strand, within AO353_13875 at 3082.735 kb on + strand, within AO353_13875 at 3082.735 kb on + strand, within AO353_13875 at 3082.735 kb on + strand, within AO353_13875 at 3082.735 kb on + strand, within AO353_13875 at 3082.735 kb on + strand, within AO353_13875 at 3082.736 kb on - strand, within AO353_13875 at 3082.736 kb on - strand, within AO353_13875 at 3082.736 kb on - strand, within AO353_13875 at 3082.736 kb on - strand, within AO353_13875 at 3082.736 kb on - strand, within AO353_13875 at 3082.736 kb on - strand, within AO353_13875 at 3082.736 kb on - strand, within AO353_13875 at 3082.736 kb on - strand, within AO353_13875 at 3082.736 kb on - strand, within AO353_13875 at 3083.026 kb on + strand, within AO353_13875 at 3083.027 kb on - strand, within AO353_13875 at 3083.027 kb on - strand, within AO353_13875 at 3083.027 kb on - strand, within AO353_13875 at 3083.032 kb on + strand, within AO353_13875 at 3083.032 kb on + strand, within AO353_13875 at 3083.032 kb on + strand, within AO353_13875 at 3083.032 kb on + strand, within AO353_13875 at 3083.032 kb on + strand, within AO353_13875 at 3083.033 kb on - strand, within AO353_13875 at 3083.033 kb on - strand, within AO353_13875 at 3083.033 kb on - strand, within AO353_13875 at 3083.033 kb on - strand, within AO353_13875 at 3083.033 kb on - strand, within AO353_13875 at 3083.033 kb on - strand, within AO353_13875 at 3083.218 kb on + strand at 3083.218 kb on + strand at 3083.218 kb on + strand at 3083.218 kb on + strand at 3083.219 kb on - strand at 3083.219 kb on - strand at 3083.219 kb on - strand at 3083.302 kb on + strand at 3083.303 kb on - strand at 3083.303 kb on - strand at 3083.309 kb on + strand at 3083.322 kb on + strand at 3083.323 kb on - strand at 3083.323 kb on - strand at 3083.338 kb on + strand at 3083.338 kb on + strand at 3083.339 kb on - strand at 3083.339 kb on - strand at 3083.339 kb on - strand at 3083.339 kb on - strand at 3083.339 kb on - strand at 3083.339 kb on - strand at 3083.420 kb on - strand at 3083.433 kb on + strand at 3083.479 kb on + strand, within AO353_13880 at 3083.479 kb on + strand, within AO353_13880 at 3083.480 kb on - strand, within AO353_13880 at 3083.480 kb on - strand, within AO353_13880 at 3083.480 kb on - strand, within AO353_13880 at 3083.480 kb on - strand, within AO353_13880 at 3083.480 kb on - strand, within AO353_13880 at 3083.480 kb on - strand, within AO353_13880 at 3083.480 kb on - strand, within AO353_13880 at 3083.480 kb on - strand, within AO353_13880 at 3083.480 kb on - strand, within AO353_13880 at 3083.602 kb on + strand, within AO353_13880 at 3083.602 kb on + strand, within AO353_13880 at 3083.602 kb on + strand, within AO353_13880 at 3083.602 kb on + strand, within AO353_13880 at 3083.602 kb on + strand, within AO353_13880 at 3083.602 kb on + strand, within AO353_13880 at 3083.603 kb on - strand, within AO353_13880 at 3083.603 kb on - strand, within AO353_13880 at 3083.603 kb on - strand, within AO353_13880 at 3084.335 kb on - strand, within AO353_13880 at 3084.335 kb on - strand, within AO353_13880 at 3084.337 kb on + strand, within AO353_13880 at 3084.337 kb on + strand, within AO353_13880 at 3084.338 kb on - strand, within AO353_13880 at 3084.403 kb on + strand, within AO353_13880 at 3084.404 kb on - strand, within AO353_13880 at 3084.615 kb on + strand at 3084.616 kb on - strand at 3084.720 kb on + strand, within AO353_13885 at 3084.720 kb on + strand, within AO353_13885 at 3084.720 kb on + strand, within AO353_13885 at 3084.720 kb on + strand, within AO353_13885 at 3084.720 kb on + strand, within AO353_13885 at 3084.720 kb on + strand, within AO353_13885 at 3084.720 kb on + strand, within AO353_13885 at 3084.720 kb on + strand, within AO353_13885 at 3084.720 kb on + strand, within AO353_13885 at 3084.720 kb on + strand, within AO353_13885 at 3084.720 kb on + strand, within AO353_13885 at 3084.721 kb on - strand, within AO353_13885 at 3084.721 kb on - strand, within AO353_13885 at 3084.721 kb on - strand, within AO353_13885 at 3084.721 kb on - strand, within AO353_13885 at 3084.721 kb on - strand, within AO353_13885 at 3084.941 kb on - strand, within AO353_13885 at 3085.184 kb on + strand, within AO353_13885 at 3085.185 kb on - strand, within AO353_13885 at 3085.209 kb on - strand, within AO353_13885 at 3085.209 kb on - strand, within AO353_13885 at 3085.311 kb on + strand, within AO353_13885 at 3085.311 kb on + strand, within AO353_13885 at 3085.312 kb on - strand, within AO353_13885 at 3085.312 kb on - strand, within AO353_13885 at 3085.312 kb on - strand, within AO353_13885 at 3085.312 kb on - strand, within AO353_13885 at 3085.368 kb on - strand, within AO353_13885 at 3085.376 kb on + strand, within AO353_13885 at 3085.376 kb on + strand, within AO353_13885 at 3085.377 kb on - strand, within AO353_13885 at 3085.377 kb on - strand, within AO353_13885
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml remove 3,082,497 + AO353_13875 0.46 +1.0 3,082,497 + AO353_13875 0.46 +0.9 3,082,497 + AO353_13875 0.46 -2.3 3,082,497 + AO353_13875 0.46 -1.3 3,082,497 + AO353_13875 0.46 +2.9 3,082,497 + AO353_13875 0.46 -0.4 3,082,497 + AO353_13875 0.46 +1.6 3,082,498 - AO353_13875 0.46 -0.7 3,082,666 + AO353_13875 0.58 +1.0 3,082,666 + AO353_13875 0.58 -0.7 3,082,666 + AO353_13875 0.58 -0.1 3,082,666 + AO353_13875 0.58 +1.3 3,082,666 + AO353_13875 0.58 +0.7 3,082,666 + AO353_13875 0.58 +1.6 3,082,666 + AO353_13875 0.58 +0.1 3,082,666 + AO353_13875 0.58 -1.0 3,082,666 + AO353_13875 0.58 +0.7 3,082,666 + AO353_13875 0.58 +1.5 3,082,666 + AO353_13875 0.58 +0.5 3,082,666 + AO353_13875 0.58 -1.3 3,082,666 + AO353_13875 0.58 -0.1 3,082,666 + AO353_13875 0.58 -1.7 3,082,666 + AO353_13875 0.58 +1.1 3,082,666 + AO353_13875 0.58 -0.3 3,082,667 - AO353_13875 0.58 +1.3 3,082,667 - AO353_13875 0.58 -0.1 3,082,667 - AO353_13875 0.58 -0.7 3,082,667 - AO353_13875 0.58 +2.3 3,082,667 - AO353_13875 0.58 -0.7 3,082,667 - AO353_13875 0.58 +0.8 3,082,667 - AO353_13875 0.58 +0.1 3,082,667 - AO353_13875 0.58 +1.3 3,082,667 - AO353_13875 0.58 +0.4 3,082,667 - AO353_13875 0.58 +1.9 3,082,667 - AO353_13875 0.58 -0.5 3,082,667 - AO353_13875 0.58 +1.2 3,082,667 - AO353_13875 0.58 -0.3 3,082,667 - AO353_13875 0.58 +0.3 3,082,667 - AO353_13875 0.58 -0.1 3,082,667 - AO353_13875 0.58 +0.3 3,082,735 + AO353_13875 0.63 -0.6 3,082,735 + AO353_13875 0.63 +0.6 3,082,735 + AO353_13875 0.63 +1.9 3,082,735 + AO353_13875 0.63 -1.7 3,082,735 + AO353_13875 0.63 +0.1 3,082,735 + AO353_13875 0.63 -0.7 3,082,735 + AO353_13875 0.63 +0.3 3,082,735 + AO353_13875 0.63 -0.1 3,082,735 + AO353_13875 0.63 -0.3 3,082,735 + AO353_13875 0.63 -2.0 3,082,735 + AO353_13875 0.63 +0.6 3,082,735 + AO353_13875 0.63 -0.3 3,082,735 + AO353_13875 0.63 +1.9 3,082,736 - AO353_13875 0.63 +1.3 3,082,736 - AO353_13875 0.63 -0.3 3,082,736 - AO353_13875 0.63 -1.0 3,082,736 - AO353_13875 0.63 +0.9 3,082,736 - AO353_13875 0.63 +2.6 3,082,736 - AO353_13875 0.63 +1.9 3,082,736 - AO353_13875 0.63 +0.3 3,082,736 - AO353_13875 0.63 +1.9 3,082,736 - AO353_13875 0.63 +1.9 3,083,026 + AO353_13875 0.85 +0.3 3,083,027 - AO353_13875 0.85 -0.3 3,083,027 - AO353_13875 0.85 +0.3 3,083,027 - AO353_13875 0.85 +1.9 3,083,032 + AO353_13875 0.85 +0.3 3,083,032 + AO353_13875 0.85 -0.3 3,083,032 + AO353_13875 0.85 -0.4 3,083,032 + AO353_13875 0.85 +0.3 3,083,032 + AO353_13875 0.85 -0.1 3,083,033 - AO353_13875 0.85 -0.6 3,083,033 - AO353_13875 0.85 -0.1 3,083,033 - AO353_13875 0.85 +1.3 3,083,033 - AO353_13875 0.85 -0.5 3,083,033 - AO353_13875 0.85 +2.8 3,083,033 - AO353_13875 0.85 -0.2 3,083,218 + +0.7 3,083,218 + -0.7 3,083,218 + +1.3 3,083,218 + +0.3 3,083,219 - +0.9 3,083,219 - +2.6 3,083,219 - +0.8 3,083,302 + +0.7 3,083,303 - -1.0 3,083,303 - -0.9 3,083,309 + +0.3 3,083,322 + -1.3 3,083,323 - +0.3 3,083,323 - +1.4 3,083,338 + +1.9 3,083,338 + +2.3 3,083,339 - +1.3 3,083,339 - +0.8 3,083,339 - -0.3 3,083,339 - +1.9 3,083,339 - -0.1 3,083,339 - +0.6 3,083,420 - +0.8 3,083,433 + +1.0 3,083,479 + AO353_13880 0.10 +0.7 3,083,479 + AO353_13880 0.10 -0.7 3,083,480 - AO353_13880 0.10 +0.3 3,083,480 - AO353_13880 0.10 +1.3 3,083,480 - AO353_13880 0.10 -2.3 3,083,480 - AO353_13880 0.10 -0.3 3,083,480 - AO353_13880 0.10 +0.3 3,083,480 - AO353_13880 0.10 +2.3 3,083,480 - AO353_13880 0.10 -0.7 3,083,480 - AO353_13880 0.10 +0.3 3,083,480 - AO353_13880 0.10 +0.3 3,083,602 + AO353_13880 0.20 -0.1 3,083,602 + AO353_13880 0.20 +0.3 3,083,602 + AO353_13880 0.20 -0.7 3,083,602 + AO353_13880 0.20 +0.9 3,083,602 + AO353_13880 0.20 -0.3 3,083,602 + AO353_13880 0.20 -0.7 3,083,603 - AO353_13880 0.20 -0.7 3,083,603 - AO353_13880 0.20 -1.3 3,083,603 - AO353_13880 0.20 -0.3 3,084,335 - AO353_13880 0.77 -2.0 3,084,335 - AO353_13880 0.77 -1.0 3,084,337 + AO353_13880 0.77 +1.7 3,084,337 + AO353_13880 0.77 +0.3 3,084,338 - AO353_13880 0.77 -2.5 3,084,403 + AO353_13880 0.82 +0.8 3,084,404 - AO353_13880 0.82 -0.7 3,084,615 + +0.3 3,084,616 - +1.0 3,084,720 + AO353_13885 0.10 +1.3 3,084,720 + AO353_13885 0.10 +0.9 3,084,720 + AO353_13885 0.10 -0.7 3,084,720 + AO353_13885 0.10 +0.3 3,084,720 + AO353_13885 0.10 -1.3 3,084,720 + AO353_13885 0.10 +0.3 3,084,720 + AO353_13885 0.10 +0.3 3,084,720 + AO353_13885 0.10 +0.6 3,084,720 + AO353_13885 0.10 +0.3 3,084,720 + AO353_13885 0.10 +1.3 3,084,720 + AO353_13885 0.10 -0.3 3,084,721 - AO353_13885 0.10 +2.1 3,084,721 - AO353_13885 0.10 -0.9 3,084,721 - AO353_13885 0.10 -0.4 3,084,721 - AO353_13885 0.10 -0.3 3,084,721 - AO353_13885 0.10 +0.3 3,084,941 - AO353_13885 0.32 +0.3 3,085,184 + AO353_13885 0.55 +0.0 3,085,185 - AO353_13885 0.55 +0.7 3,085,209 - AO353_13885 0.58 -0.3 3,085,209 - AO353_13885 0.58 +0.9 3,085,311 + AO353_13885 0.68 +3.1 3,085,311 + AO353_13885 0.68 -1.3 3,085,312 - AO353_13885 0.68 +0.3 3,085,312 - AO353_13885 0.68 +0.5 3,085,312 - AO353_13885 0.68 -0.3 3,085,312 - AO353_13885 0.68 -0.3 3,085,368 - AO353_13885 0.73 -0.1 3,085,376 + AO353_13885 0.74 -1.3 3,085,376 + AO353_13885 0.74 -0.4 3,085,377 - AO353_13885 0.74 -0.4 3,085,377 - AO353_13885 0.74 -1.7
Or see this region's nucleotide sequence