Experiment: Thallium(I) acetate 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_13810 and AO353_13815 are separated by 1 nucleotides AO353_13815 and AO353_13820 are separated by 18 nucleotides AO353_13820 and AO353_13825 overlap by 4 nucleotides
AO353_13810: AO353_13810 - type II secretion system protein F, at 3,067,712 to 3,068,596
_13810
AO353_13815: AO353_13815 - type II secretion system protein F, at 3,068,598 to 3,069,482
_13815
AO353_13820: AO353_13820 - ATPase, at 3,069,501 to 3,070,775
_13820
AO353_13825: AO353_13825 - pilus assembly protein, at 3,070,772 to 3,071,962
_13825
Position (kb)
3069
3070
3071 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 3068.588 kb on + strand at 3068.588 kb on + strand at 3068.588 kb on + strand at 3068.588 kb on + strand at 3068.589 kb on - strand at 3068.589 kb on - strand at 3068.707 kb on + strand, within AO353_13815 at 3068.707 kb on + strand, within AO353_13815 at 3068.707 kb on + strand, within AO353_13815 at 3068.707 kb on + strand, within AO353_13815 at 3068.707 kb on + strand, within AO353_13815 at 3068.708 kb on - strand, within AO353_13815 at 3068.708 kb on - strand, within AO353_13815 at 3068.731 kb on + strand, within AO353_13815 at 3068.731 kb on + strand, within AO353_13815 at 3068.731 kb on + strand, within AO353_13815 at 3068.732 kb on - strand, within AO353_13815 at 3068.932 kb on + strand, within AO353_13815 at 3068.932 kb on + strand, within AO353_13815 at 3068.933 kb on - strand, within AO353_13815 at 3068.933 kb on - strand, within AO353_13815 at 3069.014 kb on + strand, within AO353_13815 at 3069.015 kb on - strand, within AO353_13815 at 3069.015 kb on - strand, within AO353_13815 at 3069.015 kb on - strand, within AO353_13815 at 3069.015 kb on - strand, within AO353_13815 at 3069.087 kb on + strand, within AO353_13815 at 3069.087 kb on + strand, within AO353_13815 at 3069.087 kb on + strand, within AO353_13815 at 3069.087 kb on + strand, within AO353_13815 at 3069.088 kb on - strand, within AO353_13815 at 3069.088 kb on - strand, within AO353_13815 at 3069.088 kb on - strand, within AO353_13815 at 3069.088 kb on - strand, within AO353_13815 at 3069.160 kb on + strand, within AO353_13815 at 3069.160 kb on + strand, within AO353_13815 at 3069.161 kb on - strand, within AO353_13815 at 3069.161 kb on - strand, within AO353_13815 at 3069.161 kb on - strand, within AO353_13815 at 3069.189 kb on + strand, within AO353_13815 at 3069.189 kb on + strand, within AO353_13815 at 3069.189 kb on + strand, within AO353_13815 at 3069.242 kb on + strand, within AO353_13815 at 3069.242 kb on + strand, within AO353_13815 at 3069.264 kb on + strand, within AO353_13815 at 3069.415 kb on + strand at 3069.415 kb on + strand at 3069.415 kb on + strand at 3069.415 kb on + strand at 3069.415 kb on + strand at 3069.415 kb on + strand at 3069.415 kb on + strand at 3069.415 kb on + strand at 3069.415 kb on + strand at 3069.416 kb on - strand at 3069.416 kb on - strand at 3069.416 kb on - strand at 3069.416 kb on - strand at 3069.416 kb on - strand at 3069.416 kb on - strand at 3069.416 kb on - strand at 3069.416 kb on - strand at 3069.616 kb on + strand at 3069.616 kb on + strand at 3069.616 kb on + strand at 3069.616 kb on + strand at 3069.616 kb on + strand at 3069.616 kb on + strand at 3069.616 kb on + strand at 3069.616 kb on + strand at 3069.616 kb on + strand at 3069.616 kb on + strand at 3069.616 kb on + strand at 3069.616 kb on + strand at 3069.616 kb on + strand at 3069.616 kb on + strand at 3069.616 kb on + strand at 3069.616 kb on + strand at 3069.616 kb on + strand at 3069.616 kb on + strand at 3069.616 kb on + strand at 3069.616 kb on + strand at 3069.617 kb on - strand at 3069.617 kb on - strand at 3069.617 kb on - strand at 3069.617 kb on - strand at 3069.617 kb on - strand at 3069.617 kb on - strand at 3069.617 kb on - strand at 3069.617 kb on - strand at 3069.617 kb on - strand at 3069.617 kb on - strand at 3069.617 kb on - strand at 3069.617 kb on - strand at 3069.858 kb on + strand, within AO353_13820 at 3069.858 kb on + strand, within AO353_13820 at 3069.859 kb on - strand, within AO353_13820 at 3069.859 kb on - strand, within AO353_13820 at 3070.098 kb on - strand, within AO353_13820 at 3070.211 kb on + strand, within AO353_13820 at 3070.211 kb on + strand, within AO353_13820 at 3070.211 kb on + strand, within AO353_13820 at 3070.211 kb on + strand, within AO353_13820 at 3070.211 kb on + strand, within AO353_13820 at 3070.211 kb on + strand, within AO353_13820 at 3070.211 kb on + strand, within AO353_13820 at 3070.212 kb on - strand, within AO353_13820 at 3070.212 kb on - strand, within AO353_13820 at 3070.212 kb on - strand, within AO353_13820 at 3070.212 kb on - strand, within AO353_13820 at 3070.212 kb on - strand, within AO353_13820 at 3070.422 kb on + strand, within AO353_13820 at 3070.422 kb on + strand, within AO353_13820 at 3070.422 kb on + strand, within AO353_13820 at 3070.422 kb on + strand, within AO353_13820 at 3070.422 kb on + strand, within AO353_13820 at 3070.422 kb on + strand, within AO353_13820 at 3070.423 kb on - strand, within AO353_13820 at 3070.423 kb on - strand, within AO353_13820 at 3070.423 kb on - strand, within AO353_13820 at 3070.423 kb on - strand, within AO353_13820 at 3070.423 kb on - strand, within AO353_13820 at 3070.423 kb on - strand, within AO353_13820 at 3070.423 kb on - strand, within AO353_13820 at 3070.423 kb on - strand at 3070.423 kb on - strand, within AO353_13820 at 3070.594 kb on + strand, within AO353_13820 at 3070.594 kb on + strand, within AO353_13820 at 3070.594 kb on + strand, within AO353_13820 at 3070.595 kb on - strand, within AO353_13820 at 3070.595 kb on - strand, within AO353_13820 at 3070.595 kb on - strand, within AO353_13820 at 3070.687 kb on + strand at 3070.687 kb on + strand at 3070.687 kb on + strand at 3070.687 kb on + strand at 3070.687 kb on + strand at 3070.687 kb on + strand at 3070.688 kb on - strand at 3070.688 kb on - strand at 3070.688 kb on - strand at 3070.688 kb on - strand at 3070.688 kb on - strand at 3070.688 kb on - strand at 3070.688 kb on - strand at 3070.688 kb on - strand at 3070.688 kb on - strand at 3070.688 kb on - strand at 3070.688 kb on - strand at 3070.688 kb on - strand at 3070.948 kb on - strand, within AO353_13825 at 3071.023 kb on - strand, within AO353_13825 at 3071.127 kb on + strand, within AO353_13825 at 3071.127 kb on + strand, within AO353_13825 at 3071.127 kb on + strand, within AO353_13825 at 3071.128 kb on - strand, within AO353_13825 at 3071.128 kb on - strand, within AO353_13825 at 3071.135 kb on + strand, within AO353_13825 at 3071.135 kb on + strand, within AO353_13825 at 3071.135 kb on + strand, within AO353_13825 at 3071.135 kb on + strand, within AO353_13825 at 3071.136 kb on - strand, within AO353_13825 at 3071.136 kb on - strand, within AO353_13825 at 3071.136 kb on - strand, within AO353_13825 at 3071.244 kb on + strand, within AO353_13825 at 3071.244 kb on + strand, within AO353_13825 at 3071.244 kb on + strand, within AO353_13825 at 3071.244 kb on + strand, within AO353_13825 at 3071.244 kb on + strand, within AO353_13825 at 3071.244 kb on + strand, within AO353_13825 at 3071.244 kb on + strand, within AO353_13825 at 3071.244 kb on + strand, within AO353_13825 at 3071.244 kb on + strand, within AO353_13825 at 3071.244 kb on + strand, within AO353_13825 at 3071.244 kb on + strand, within AO353_13825 at 3071.244 kb on + strand, within AO353_13825 at 3071.244 kb on + strand, within AO353_13825 at 3071.244 kb on + strand, within AO353_13825 at 3071.244 kb on + strand, within AO353_13825 at 3071.244 kb on + strand, within AO353_13825 at 3071.244 kb on + strand, within AO353_13825 at 3071.244 kb on + strand, within AO353_13825 at 3071.244 kb on + strand, within AO353_13825 at 3071.245 kb on - strand, within AO353_13825 at 3071.245 kb on - strand, within AO353_13825 at 3071.245 kb on - strand, within AO353_13825 at 3071.245 kb on - strand, within AO353_13825 at 3071.245 kb on - strand, within AO353_13825 at 3071.245 kb on - strand, within AO353_13825 at 3071.245 kb on - strand, within AO353_13825 at 3071.245 kb on - strand, within AO353_13825 at 3071.245 kb on - strand, within AO353_13825 at 3071.245 kb on - strand, within AO353_13825 at 3071.245 kb on - strand, within AO353_13825 at 3071.245 kb on - strand, within AO353_13825 at 3071.245 kb on - strand, within AO353_13825 at 3071.245 kb on - strand, within AO353_13825 at 3071.245 kb on - strand, within AO353_13825 at 3071.245 kb on - strand, within AO353_13825 at 3071.245 kb on - strand, within AO353_13825 at 3071.245 kb on - strand, within AO353_13825 at 3071.245 kb on - strand, within AO353_13825 at 3071.292 kb on + strand, within AO353_13825 at 3071.293 kb on - strand, within AO353_13825 at 3071.408 kb on + strand, within AO353_13825 at 3071.408 kb on + strand, within AO353_13825 at 3071.604 kb on - strand, within AO353_13825 at 3071.637 kb on + strand, within AO353_13825 at 3071.771 kb on + strand, within AO353_13825 at 3071.771 kb on + strand, within AO353_13825 at 3071.771 kb on + strand, within AO353_13825 at 3071.771 kb on + strand, within AO353_13825 at 3071.771 kb on + strand, within AO353_13825 at 3071.771 kb on + strand, within AO353_13825 at 3071.771 kb on + strand, within AO353_13825 at 3071.771 kb on + strand, within AO353_13825 at 3071.771 kb on + strand, within AO353_13825 at 3071.771 kb on + strand, within AO353_13825 at 3071.771 kb on + strand, within AO353_13825 at 3071.772 kb on - strand, within AO353_13825 at 3071.772 kb on - strand, within AO353_13825 at 3071.772 kb on - strand, within AO353_13825 at 3071.772 kb on - strand, within AO353_13825 at 3071.772 kb on - strand, within AO353_13825 at 3071.772 kb on - strand, within AO353_13825 at 3071.772 kb on - strand, within AO353_13825
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml remove 3,068,588 + +0.3 3,068,588 + +1.9 3,068,588 + +0.3 3,068,588 + +2.1 3,068,589 - -0.7 3,068,589 - -0.2 3,068,707 + AO353_13815 0.12 -0.7 3,068,707 + AO353_13815 0.12 -0.4 3,068,707 + AO353_13815 0.12 -1.7 3,068,707 + AO353_13815 0.12 +0.6 3,068,707 + AO353_13815 0.12 +0.5 3,068,708 - AO353_13815 0.12 -1.3 3,068,708 - AO353_13815 0.12 +0.5 3,068,731 + AO353_13815 0.15 -1.7 3,068,731 + AO353_13815 0.15 +0.3 3,068,731 + AO353_13815 0.15 +1.9 3,068,732 - AO353_13815 0.15 +2.1 3,068,932 + AO353_13815 0.38 -0.8 3,068,932 + AO353_13815 0.38 +1.3 3,068,933 - AO353_13815 0.38 +1.3 3,068,933 - AO353_13815 0.38 +1.6 3,069,014 + AO353_13815 0.47 +0.3 3,069,015 - AO353_13815 0.47 +0.9 3,069,015 - AO353_13815 0.47 +0.9 3,069,015 - AO353_13815 0.47 +1.1 3,069,015 - AO353_13815 0.47 -2.2 3,069,087 + AO353_13815 0.55 +1.0 3,069,087 + AO353_13815 0.55 +1.9 3,069,087 + AO353_13815 0.55 +1.6 3,069,087 + AO353_13815 0.55 -0.4 3,069,088 - AO353_13815 0.55 -1.3 3,069,088 - AO353_13815 0.55 -0.3 3,069,088 - AO353_13815 0.55 -1.3 3,069,088 - AO353_13815 0.55 -3.2 3,069,160 + AO353_13815 0.64 +4.0 3,069,160 + AO353_13815 0.64 +0.6 3,069,161 - AO353_13815 0.64 -1.7 3,069,161 - AO353_13815 0.64 -1.3 3,069,161 - AO353_13815 0.64 -0.2 3,069,189 + AO353_13815 0.67 -1.5 3,069,189 + AO353_13815 0.67 +1.0 3,069,189 + AO353_13815 0.67 +0.6 3,069,242 + AO353_13815 0.73 -0.4 3,069,242 + AO353_13815 0.73 +0.9 3,069,264 + AO353_13815 0.75 +1.0 3,069,415 + -0.7 3,069,415 + -0.0 3,069,415 + -1.0 3,069,415 + +1.3 3,069,415 + -1.7 3,069,415 + +1.9 3,069,415 + +0.4 3,069,415 + +0.9 3,069,415 + +0.3 3,069,416 - -1.1 3,069,416 - -1.7 3,069,416 - +1.0 3,069,416 - +0.3 3,069,416 - +0.9 3,069,416 - -0.3 3,069,416 - -0.3 3,069,416 - +1.3 3,069,616 + +2.1 3,069,616 + +0.5 3,069,616 + -0.1 3,069,616 + -1.3 3,069,616 + -0.7 3,069,616 + +0.9 3,069,616 + +1.2 3,069,616 + +0.3 3,069,616 + +0.3 3,069,616 + +0.6 3,069,616 + -0.5 3,069,616 + +1.0 3,069,616 + -2.3 3,069,616 + -0.7 3,069,616 + +0.6 3,069,616 + +0.9 3,069,616 + -0.1 3,069,616 + +0.3 3,069,616 + +0.4 3,069,616 + +0.3 3,069,617 - -0.0 3,069,617 - +0.7 3,069,617 - -0.7 3,069,617 - +1.3 3,069,617 - -2.0 3,069,617 - +1.9 3,069,617 - +0.7 3,069,617 - +1.6 3,069,617 - +0.7 3,069,617 - +2.4 3,069,617 - -0.7 3,069,617 - +1.3 3,069,858 + AO353_13820 0.28 -0.2 3,069,858 + AO353_13820 0.28 +0.6 3,069,859 - AO353_13820 0.28 +2.6 3,069,859 - AO353_13820 0.28 +0.3 3,070,098 - AO353_13820 0.47 -0.0 3,070,211 + AO353_13820 0.56 +1.1 3,070,211 + AO353_13820 0.56 +1.3 3,070,211 + AO353_13820 0.56 +1.3 3,070,211 + AO353_13820 0.56 +0.3 3,070,211 + AO353_13820 0.56 -0.1 3,070,211 + AO353_13820 0.56 -1.3 3,070,211 + AO353_13820 0.56 -1.3 3,070,212 - AO353_13820 0.56 +3.6 3,070,212 - AO353_13820 0.56 +1.1 3,070,212 - AO353_13820 0.56 +0.5 3,070,212 - AO353_13820 0.56 +0.3 3,070,212 - AO353_13820 0.56 -0.0 3,070,422 + AO353_13820 0.72 -2.0 3,070,422 + AO353_13820 0.72 +1.3 3,070,422 + AO353_13820 0.72 +0.6 3,070,422 + AO353_13820 0.72 +2.1 3,070,422 + AO353_13820 0.72 -1.2 3,070,422 + AO353_13820 0.72 +0.7 3,070,423 - AO353_13820 0.72 +1.3 3,070,423 - AO353_13820 0.72 +0.9 3,070,423 - AO353_13820 0.72 +0.3 3,070,423 - AO353_13820 0.72 +3.1 3,070,423 - AO353_13820 0.72 +2.5 3,070,423 - AO353_13820 0.72 -0.0 3,070,423 - AO353_13820 0.72 -0.1 3,070,423 - +1.9 3,070,423 - AO353_13820 0.72 -2.3 3,070,594 + AO353_13820 0.86 +0.3 3,070,594 + AO353_13820 0.86 -2.0 3,070,594 + AO353_13820 0.86 +2.6 3,070,595 - AO353_13820 0.86 +2.1 3,070,595 - AO353_13820 0.86 +0.3 3,070,595 - AO353_13820 0.86 +0.6 3,070,687 + -0.3 3,070,687 + -1.0 3,070,687 + +1.3 3,070,687 + +0.7 3,070,687 + -0.4 3,070,687 + +0.3 3,070,688 - +1.6 3,070,688 - +0.0 3,070,688 - +0.3 3,070,688 - -0.1 3,070,688 - +0.1 3,070,688 - +0.1 3,070,688 - +0.4 3,070,688 - -1.3 3,070,688 - -1.7 3,070,688 - -0.2 3,070,688 - -0.2 3,070,688 - +2.3 3,070,948 - AO353_13825 0.15 +0.3 3,071,023 - AO353_13825 0.21 +1.9 3,071,127 + AO353_13825 0.30 +0.3 3,071,127 + AO353_13825 0.30 -1.3 3,071,127 + AO353_13825 0.30 +0.3 3,071,128 - AO353_13825 0.30 -0.3 3,071,128 - AO353_13825 0.30 -0.3 3,071,135 + AO353_13825 0.30 +0.3 3,071,135 + AO353_13825 0.30 +0.3 3,071,135 + AO353_13825 0.30 +0.0 3,071,135 + AO353_13825 0.30 -0.1 3,071,136 - AO353_13825 0.31 +0.7 3,071,136 - AO353_13825 0.31 -0.6 3,071,136 - AO353_13825 0.31 -0.0 3,071,244 + AO353_13825 0.40 +0.3 3,071,244 + AO353_13825 0.40 +0.3 3,071,244 + AO353_13825 0.40 -0.5 3,071,244 + AO353_13825 0.40 +0.3 3,071,244 + AO353_13825 0.40 -0.7 3,071,244 + AO353_13825 0.40 -1.7 3,071,244 + AO353_13825 0.40 +0.3 3,071,244 + AO353_13825 0.40 -2.2 3,071,244 + AO353_13825 0.40 +0.3 3,071,244 + AO353_13825 0.40 -1.2 3,071,244 + AO353_13825 0.40 -0.5 3,071,244 + AO353_13825 0.40 +1.2 3,071,244 + AO353_13825 0.40 +0.5 3,071,244 + AO353_13825 0.40 +0.0 3,071,244 + AO353_13825 0.40 -1.0 3,071,244 + AO353_13825 0.40 +0.3 3,071,244 + AO353_13825 0.40 -0.4 3,071,244 + AO353_13825 0.40 -1.3 3,071,244 + AO353_13825 0.40 -1.2 3,071,245 - AO353_13825 0.40 -0.2 3,071,245 - AO353_13825 0.40 +0.5 3,071,245 - AO353_13825 0.40 +0.1 3,071,245 - AO353_13825 0.40 +1.4 3,071,245 - AO353_13825 0.40 +1.0 3,071,245 - AO353_13825 0.40 +0.6 3,071,245 - AO353_13825 0.40 +0.8 3,071,245 - AO353_13825 0.40 -0.3 3,071,245 - AO353_13825 0.40 +1.9 3,071,245 - AO353_13825 0.40 +0.3 3,071,245 - AO353_13825 0.40 +1.3 3,071,245 - AO353_13825 0.40 -0.4 3,071,245 - AO353_13825 0.40 +1.5 3,071,245 - AO353_13825 0.40 +0.3 3,071,245 - AO353_13825 0.40 -1.0 3,071,245 - AO353_13825 0.40 -2.7 3,071,245 - AO353_13825 0.40 +0.3 3,071,245 - AO353_13825 0.40 -0.7 3,071,245 - AO353_13825 0.40 -2.3 3,071,292 + AO353_13825 0.44 +0.3 3,071,293 - AO353_13825 0.44 +0.7 3,071,408 + AO353_13825 0.53 +0.3 3,071,408 + AO353_13825 0.53 +0.9 3,071,604 - AO353_13825 0.70 +0.3 3,071,637 + AO353_13825 0.73 -0.3 3,071,771 + AO353_13825 0.84 +1.3 3,071,771 + AO353_13825 0.84 +0.3 3,071,771 + AO353_13825 0.84 +0.1 3,071,771 + AO353_13825 0.84 -0.0 3,071,771 + AO353_13825 0.84 +1.7 3,071,771 + AO353_13825 0.84 -1.0 3,071,771 + AO353_13825 0.84 +0.3 3,071,771 + AO353_13825 0.84 -0.7 3,071,771 + AO353_13825 0.84 +2.1 3,071,771 + AO353_13825 0.84 -0.5 3,071,771 + AO353_13825 0.84 -1.3 3,071,772 - AO353_13825 0.84 +0.6 3,071,772 - AO353_13825 0.84 +1.0 3,071,772 - AO353_13825 0.84 +0.8 3,071,772 - AO353_13825 0.84 +0.3 3,071,772 - AO353_13825 0.84 +0.0 3,071,772 - AO353_13825 0.84 -0.7 3,071,772 - AO353_13825 0.84 +0.7
Or see this region's nucleotide sequence