Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_11630

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_11620 and AO353_11625 are separated by 245 nucleotidesAO353_11625 and AO353_11630 are separated by 74 nucleotidesAO353_11630 and AO353_11635 overlap by 11 nucleotides AO353_11620: AO353_11620 - ATP-binding protein, at 2,565,596 to 2,566,756 _11620 AO353_11625: AO353_11625 - methyltransferase, at 2,567,002 to 2,567,631 _11625 AO353_11630: AO353_11630 - ABC transporter permease, at 2,567,706 to 2,568,350 _11630 AO353_11635: AO353_11635 - ABC transporter, at 2,568,340 to 2,569,464 _11635 Position (kb) 2567 2568 2569Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2566.714 kb on + strandat 2566.715 kb on - strandat 2566.715 kb on - strandat 2566.715 kb on - strandat 2566.728 kb on + strandat 2566.728 kb on + strandat 2566.729 kb on - strandat 2566.729 kb on - strandat 2566.793 kb on + strandat 2566.794 kb on - strandat 2566.794 kb on - strandat 2566.932 kb on + strandat 2566.933 kb on - strandat 2566.933 kb on - strandat 2566.997 kb on + strandat 2566.997 kb on + strandat 2566.997 kb on + strandat 2566.998 kb on - strandat 2566.998 kb on - strandat 2566.998 kb on - strandat 2566.998 kb on - strandat 2566.998 kb on - strandat 2567.003 kb on + strandat 2567.003 kb on + strandat 2567.003 kb on + strandat 2567.003 kb on + strandat 2567.003 kb on + strandat 2567.003 kb on + strandat 2567.004 kb on - strandat 2567.004 kb on - strandat 2567.004 kb on - strandat 2567.072 kb on + strand, within AO353_11625at 2567.072 kb on + strand, within AO353_11625at 2567.072 kb on + strand, within AO353_11625at 2567.072 kb on + strand, within AO353_11625at 2567.072 kb on + strand, within AO353_11625at 2567.072 kb on + strand, within AO353_11625at 2567.073 kb on - strand, within AO353_11625at 2567.073 kb on - strand, within AO353_11625at 2567.073 kb on - strand, within AO353_11625at 2567.073 kb on - strand, within AO353_11625at 2567.073 kb on - strand, within AO353_11625at 2567.494 kb on + strand, within AO353_11625at 2567.494 kb on + strand, within AO353_11625at 2567.494 kb on + strand, within AO353_11625at 2567.494 kb on + strand, within AO353_11625at 2567.494 kb on + strand, within AO353_11625at 2567.494 kb on + strand, within AO353_11625at 2567.494 kb on + strand, within AO353_11625at 2567.494 kb on + strand, within AO353_11625at 2567.494 kb on + strand, within AO353_11625at 2567.494 kb on + strand, within AO353_11625at 2567.494 kb on + strand, within AO353_11625at 2567.494 kb on + strand, within AO353_11625at 2567.494 kb on + strand, within AO353_11625at 2567.494 kb on + strand, within AO353_11625at 2567.495 kb on - strand, within AO353_11625at 2567.495 kb on - strand, within AO353_11625at 2567.495 kb on - strand, within AO353_11625at 2567.495 kb on - strand, within AO353_11625at 2567.495 kb on - strand, within AO353_11625at 2567.495 kb on - strand, within AO353_11625at 2567.495 kb on - strand, within AO353_11625at 2567.495 kb on - strand, within AO353_11625at 2567.495 kb on - strand, within AO353_11625at 2567.576 kb on + strandat 2567.576 kb on + strandat 2567.576 kb on + strandat 2567.577 kb on - strandat 2567.577 kb on - strandat 2567.577 kb on - strandat 2567.666 kb on + strandat 2567.666 kb on + strandat 2567.667 kb on - strandat 2567.667 kb on - strandat 2567.667 kb on - strandat 2567.667 kb on - strandat 2567.667 kb on - strandat 2567.667 kb on - strandat 2567.668 kb on + strandat 2567.668 kb on + strandat 2567.668 kb on + strandat 2567.668 kb on + strandat 2567.669 kb on - strandat 2567.669 kb on - strandat 2567.669 kb on - strandat 2567.669 kb on - strandat 2567.669 kb on - strandat 2567.669 kb on - strandat 2567.819 kb on - strand, within AO353_11630at 2567.903 kb on + strand, within AO353_11630at 2567.903 kb on + strand, within AO353_11630at 2567.903 kb on + strand, within AO353_11630at 2567.903 kb on + strand, within AO353_11630at 2567.903 kb on + strand, within AO353_11630at 2567.903 kb on + strand, within AO353_11630at 2567.904 kb on - strand, within AO353_11630at 2567.904 kb on - strand, within AO353_11630at 2567.904 kb on - strand, within AO353_11630at 2567.904 kb on - strand, within AO353_11630at 2567.904 kb on - strand, within AO353_11630at 2567.904 kb on - strand, within AO353_11630at 2567.904 kb on - strand, within AO353_11630at 2567.904 kb on - strand, within AO353_11630at 2567.963 kb on + strand, within AO353_11630at 2567.963 kb on + strand, within AO353_11630at 2567.963 kb on + strand, within AO353_11630at 2567.963 kb on + strand, within AO353_11630at 2567.964 kb on - strand, within AO353_11630at 2567.964 kb on - strand, within AO353_11630at 2567.964 kb on - strand, within AO353_11630at 2568.100 kb on + strand, within AO353_11630at 2568.100 kb on + strand, within AO353_11630at 2568.100 kb on + strand, within AO353_11630at 2568.100 kb on + strand, within AO353_11630at 2568.100 kb on + strand, within AO353_11630at 2568.100 kb on + strand, within AO353_11630at 2568.100 kb on + strand, within AO353_11630at 2568.101 kb on - strand, within AO353_11630at 2568.101 kb on - strand, within AO353_11630at 2568.101 kb on - strand, within AO353_11630at 2568.101 kb on - strand, within AO353_11630at 2568.220 kb on + strand, within AO353_11630at 2568.220 kb on + strand, within AO353_11630at 2568.220 kb on + strand, within AO353_11630at 2568.220 kb on + strand, within AO353_11630at 2568.220 kb on + strand, within AO353_11630at 2568.220 kb on + strand, within AO353_11630at 2568.221 kb on - strand, within AO353_11630at 2568.221 kb on - strandat 2568.221 kb on - strand, within AO353_11630at 2568.221 kb on - strand, within AO353_11630at 2568.221 kb on - strand, within AO353_11630at 2568.221 kb on - strand, within AO353_11630at 2568.221 kb on - strand, within AO353_11630at 2568.221 kb on - strand, within AO353_11630at 2568.221 kb on - strand, within AO353_11630at 2568.221 kb on - strand, within AO353_11630at 2568.221 kb on - strand, within AO353_11630at 2568.350 kb on + strandat 2568.350 kb on + strandat 2568.350 kb on + strandat 2568.350 kb on + strandat 2568.350 kb on + strandat 2568.351 kb on - strandat 2568.351 kb on - strandat 2568.351 kb on - strandat 2568.351 kb on - strandat 2568.351 kb on - strandat 2568.351 kb on - strandat 2568.351 kb on - strandat 2568.351 kb on - strandat 2568.351 kb on - strandat 2568.351 kb on - strandat 2568.351 kb on - strandat 2568.351 kb on - strandat 2568.436 kb on + strandat 2568.574 kb on + strand, within AO353_11635at 2568.663 kb on + strand, within AO353_11635at 2568.663 kb on + strand, within AO353_11635at 2568.663 kb on + strand, within AO353_11635at 2568.664 kb on - strand, within AO353_11635at 2568.664 kb on - strand, within AO353_11635at 2568.757 kb on - strand, within AO353_11635at 2569.343 kb on + strand, within AO353_11635at 2569.344 kb on - strand, within AO353_11635at 2569.344 kb on - strand, within AO353_11635at 2569.344 kb on - strand, within AO353_11635at 2569.344 kb on - strand, within AO353_11635

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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2,566,714 + +0.9
2,566,715 - +0.5
2,566,715 - -0.5
2,566,715 - +0.5
2,566,728 + +0.2
2,566,728 + +1.5
2,566,729 - +1.5
2,566,729 - -0.7
2,566,793 + -1.1
2,566,794 - +1.0
2,566,794 - -1.1
2,566,932 + +0.7
2,566,933 - -0.1
2,566,933 - +0.5
2,566,997 + +0.1
2,566,997 + +2.1
2,566,997 + -0.1
2,566,998 - -0.5
2,566,998 - +1.5
2,566,998 - -0.5
2,566,998 - -0.2
2,566,998 - -0.9
2,567,003 + +1.1
2,567,003 + -0.6
2,567,003 + -0.3
2,567,003 + +0.3
2,567,003 + -2.5
2,567,003 + -0.7
2,567,004 - +0.0
2,567,004 - +0.5
2,567,004 - +1.8
2,567,072 + AO353_11625 0.11 -0.7
2,567,072 + AO353_11625 0.11 +0.8
2,567,072 + AO353_11625 0.11 +0.5
2,567,072 + AO353_11625 0.11 +0.4
2,567,072 + AO353_11625 0.11 +1.1
2,567,072 + AO353_11625 0.11 -0.6
2,567,073 - AO353_11625 0.11 -0.5
2,567,073 - AO353_11625 0.11 +0.5
2,567,073 - AO353_11625 0.11 -0.5
2,567,073 - AO353_11625 0.11 -1.8
2,567,073 - AO353_11625 0.11 +1.1
2,567,494 + AO353_11625 0.78 +1.5
2,567,494 + AO353_11625 0.78 +0.5
2,567,494 + AO353_11625 0.78 -0.5
2,567,494 + AO353_11625 0.78 +1.1
2,567,494 + AO353_11625 0.78 -1.8
2,567,494 + AO353_11625 0.78 -2.3
2,567,494 + AO353_11625 0.78 +0.4
2,567,494 + AO353_11625 0.78 +0.1
2,567,494 + AO353_11625 0.78 +0.8
2,567,494 + AO353_11625 0.78 +0.5
2,567,494 + AO353_11625 0.78 -0.1
2,567,494 + AO353_11625 0.78 +0.7
2,567,494 + AO353_11625 0.78 +1.5
2,567,494 + AO353_11625 0.78 -1.1
2,567,495 - AO353_11625 0.78 -0.1
2,567,495 - AO353_11625 0.78 +0.5
2,567,495 - AO353_11625 0.78 +3.5
2,567,495 - AO353_11625 0.78 +1.5
2,567,495 - AO353_11625 0.78 -0.1
2,567,495 - AO353_11625 0.78 -0.2
2,567,495 - AO353_11625 0.78 +0.5
2,567,495 - AO353_11625 0.78 -0.1
2,567,495 - AO353_11625 0.78 +0.9
2,567,576 + +0.1
2,567,576 + -2.1
2,567,576 + -1.1
2,567,577 - -2.1
2,567,577 - -0.8
2,567,577 - -1.3
2,567,666 + +1.2
2,567,666 + +0.0
2,567,667 - -0.1
2,567,667 - -0.2
2,567,667 - -0.2
2,567,667 - +1.5
2,567,667 - +0.1
2,567,667 - -1.1
2,567,668 + +1.3
2,567,668 + +1.3
2,567,668 + +0.5
2,567,668 + -2.1
2,567,669 - +2.5
2,567,669 - -1.8
2,567,669 - -0.3
2,567,669 - -0.5
2,567,669 - +2.1
2,567,669 - +2.2
2,567,819 - AO353_11630 0.18 +1.5
2,567,903 + AO353_11630 0.31 +0.9
2,567,903 + AO353_11630 0.31 +2.1
2,567,903 + AO353_11630 0.31 -0.3
2,567,903 + AO353_11630 0.31 +0.5
2,567,903 + AO353_11630 0.31 +1.3
2,567,903 + AO353_11630 0.31 +0.5
2,567,904 - AO353_11630 0.31 -1.2
2,567,904 - AO353_11630 0.31 +1.1
2,567,904 - AO353_11630 0.31 -0.2
2,567,904 - AO353_11630 0.31 +0.9
2,567,904 - AO353_11630 0.31 -0.5
2,567,904 - AO353_11630 0.31 +0.5
2,567,904 - AO353_11630 0.31 +3.1
2,567,904 - AO353_11630 0.31 -0.9
2,567,963 + AO353_11630 0.40 +1.1
2,567,963 + AO353_11630 0.40 -0.5
2,567,963 + AO353_11630 0.40 +0.2
2,567,963 + AO353_11630 0.40 +0.5
2,567,964 - AO353_11630 0.40 -1.8
2,567,964 - AO353_11630 0.40 +2.1
2,567,964 - AO353_11630 0.40 +0.2
2,568,100 + AO353_11630 0.61 +0.4
2,568,100 + AO353_11630 0.61 -0.2
2,568,100 + AO353_11630 0.61 +0.2
2,568,100 + AO353_11630 0.61 +1.3
2,568,100 + AO353_11630 0.61 -0.9
2,568,100 + AO353_11630 0.61 -0.1
2,568,100 + AO353_11630 0.61 -0.5
2,568,101 - AO353_11630 0.61 +0.3
2,568,101 - AO353_11630 0.61 +0.0
2,568,101 - AO353_11630 0.61 +0.5
2,568,101 - AO353_11630 0.61 -2.8
2,568,220 + AO353_11630 0.80 -0.2
2,568,220 + AO353_11630 0.80 +0.5
2,568,220 + AO353_11630 0.80 +1.3
2,568,220 + AO353_11630 0.80 +0.7
2,568,220 + AO353_11630 0.80 +0.0
2,568,220 + AO353_11630 0.80 -1.1
2,568,221 - AO353_11630 0.80 +1.7
2,568,221 - -1.5
2,568,221 - AO353_11630 0.80 -0.5
2,568,221 - AO353_11630 0.80 -1.1
2,568,221 - AO353_11630 0.80 +1.8
2,568,221 - AO353_11630 0.80 +2.1
2,568,221 - AO353_11630 0.80 +0.7
2,568,221 - AO353_11630 0.80 +1.3
2,568,221 - AO353_11630 0.80 +0.5
2,568,221 - AO353_11630 0.80 +0.2
2,568,221 - AO353_11630 0.80 +0.5
2,568,350 + -1.1
2,568,350 + -0.1
2,568,350 + -1.8
2,568,350 + +0.2
2,568,350 + -0.8
2,568,351 - +0.2
2,568,351 - +0.5
2,568,351 - +0.2
2,568,351 - +0.5
2,568,351 - +1.5
2,568,351 - -1.5
2,568,351 - -0.7
2,568,351 - -0.5
2,568,351 - +1.5
2,568,351 - -0.8
2,568,351 - +2.1
2,568,351 - -0.7
2,568,436 + -0.5
2,568,574 + AO353_11635 0.21 -0.3
2,568,663 + AO353_11635 0.29 -1.8
2,568,663 + AO353_11635 0.29 +0.3
2,568,663 + AO353_11635 0.29 -0.1
2,568,664 - AO353_11635 0.29 +0.9
2,568,664 - AO353_11635 0.29 +0.3
2,568,757 - AO353_11635 0.37 +1.1
2,569,343 + AO353_11635 0.89 +0.2
2,569,344 - AO353_11635 0.89 +0.1
2,569,344 - AO353_11635 0.89 +0.1
2,569,344 - AO353_11635 0.89 -0.2
2,569,344 - AO353_11635 0.89 -0.7

Or see this region's nucleotide sequence