Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_07535

Experiment: Thallium(I) acetate 0.008 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_07525 and AO353_07530 are separated by 90 nucleotidesAO353_07530 and AO353_07535 are separated by 60 nucleotidesAO353_07535 and AO353_07540 are separated by 240 nucleotides AO353_07525: AO353_07525 - biotin synthase, at 1,656,226 to 1,657,281 _07525 AO353_07530: AO353_07530 - amidophosphoribosyltransferase, at 1,657,372 to 1,658,112 _07530 AO353_07535: AO353_07535 - ModE family transcriptional regulator, at 1,658,173 to 1,658,937 _07535 AO353_07540: AO353_07540 - transcriptional initiation protein Tat, at 1,659,178 to 1,661,079 _07540 Position (kb) 1658 1659Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1657.297 kb on + strandat 1657.297 kb on + strandat 1657.297 kb on + strandat 1657.297 kb on + strandat 1657.298 kb on - strandat 1657.298 kb on - strandat 1657.298 kb on - strandat 1657.298 kb on - strandat 1657.298 kb on - strandat 1657.326 kb on + strandat 1657.327 kb on - strandat 1657.327 kb on - strandat 1657.356 kb on + strandat 1657.356 kb on + strandat 1657.356 kb on + strandat 1657.356 kb on + strandat 1657.356 kb on + strandat 1657.356 kb on + strandat 1657.356 kb on + strandat 1657.356 kb on + strandat 1657.357 kb on - strandat 1657.357 kb on - strandat 1657.357 kb on - strandat 1657.357 kb on - strandat 1657.357 kb on - strandat 1657.357 kb on - strandat 1657.357 kb on - strandat 1657.357 kb on - strandat 1657.357 kb on - strandat 1657.357 kb on - strandat 1657.357 kb on - strandat 1657.360 kb on + strandat 1657.360 kb on + strandat 1657.360 kb on + strandat 1657.360 kb on + strandat 1657.360 kb on + strandat 1657.360 kb on + strandat 1657.360 kb on + strandat 1657.361 kb on - strandat 1657.361 kb on - strandat 1657.361 kb on - strandat 1657.361 kb on - strandat 1657.361 kb on - strandat 1657.476 kb on + strand, within AO353_07530at 1657.476 kb on + strand, within AO353_07530at 1657.476 kb on + strand, within AO353_07530at 1657.476 kb on + strand, within AO353_07530at 1657.476 kb on + strand, within AO353_07530at 1657.476 kb on + strand, within AO353_07530at 1657.477 kb on - strand, within AO353_07530at 1657.477 kb on - strand, within AO353_07530at 1657.477 kb on - strand, within AO353_07530at 1657.477 kb on - strand, within AO353_07530at 1657.477 kb on - strand, within AO353_07530at 1657.477 kb on - strand, within AO353_07530at 1657.477 kb on - strand, within AO353_07530at 1657.615 kb on + strand, within AO353_07530at 1657.615 kb on + strand, within AO353_07530at 1657.615 kb on + strand, within AO353_07530at 1657.615 kb on + strand, within AO353_07530at 1657.615 kb on + strand, within AO353_07530at 1657.615 kb on + strand, within AO353_07530at 1657.615 kb on + strand, within AO353_07530at 1657.615 kb on + strand, within AO353_07530at 1657.615 kb on + strand, within AO353_07530at 1657.615 kb on + strand, within AO353_07530at 1657.615 kb on + strand, within AO353_07530at 1657.615 kb on + strand, within AO353_07530at 1657.615 kb on + strand, within AO353_07530at 1657.615 kb on + strand, within AO353_07530at 1657.616 kb on - strand, within AO353_07530at 1657.616 kb on - strand, within AO353_07530at 1657.795 kb on + strand, within AO353_07530at 1657.795 kb on + strand, within AO353_07530at 1657.796 kb on - strand, within AO353_07530at 1657.796 kb on - strand, within AO353_07530at 1657.796 kb on - strand, within AO353_07530at 1657.797 kb on + strand, within AO353_07530at 1657.798 kb on - strand, within AO353_07530at 1657.798 kb on - strand, within AO353_07530at 1657.798 kb on - strand, within AO353_07530at 1657.798 kb on - strand, within AO353_07530at 1658.071 kb on + strandat 1658.071 kb on + strandat 1658.071 kb on + strandat 1658.072 kb on - strandat 1658.072 kb on - strandat 1658.184 kb on + strandat 1658.184 kb on + strandat 1658.184 kb on + strandat 1658.184 kb on + strandat 1658.184 kb on + strandat 1658.184 kb on + strandat 1658.185 kb on - strandat 1658.185 kb on - strandat 1658.185 kb on - strandat 1658.185 kb on - strandat 1658.185 kb on - strandat 1658.185 kb on - strandat 1658.185 kb on - strandat 1658.185 kb on - strandat 1658.185 kb on - strandat 1658.293 kb on + strand, within AO353_07535at 1658.293 kb on + strand, within AO353_07535at 1658.293 kb on + strand, within AO353_07535at 1658.293 kb on + strand, within AO353_07535at 1658.293 kb on + strand, within AO353_07535at 1658.294 kb on - strand, within AO353_07535at 1658.294 kb on - strand, within AO353_07535at 1658.294 kb on - strand, within AO353_07535at 1658.425 kb on + strand, within AO353_07535at 1658.425 kb on + strand, within AO353_07535at 1658.425 kb on + strand, within AO353_07535at 1658.425 kb on + strand, within AO353_07535at 1658.425 kb on + strand, within AO353_07535at 1658.425 kb on + strandat 1658.425 kb on + strand, within AO353_07535at 1658.444 kb on + strand, within AO353_07535at 1658.444 kb on + strand, within AO353_07535at 1658.444 kb on + strand, within AO353_07535at 1658.624 kb on + strand, within AO353_07535at 1658.624 kb on + strand, within AO353_07535at 1658.625 kb on - strand, within AO353_07535at 1658.828 kb on + strand, within AO353_07535at 1658.961 kb on - strandat 1658.961 kb on - strandat 1659.003 kb on + strandat 1659.003 kb on + strandat 1659.003 kb on + strandat 1659.004 kb on - strandat 1659.004 kb on - strandat 1659.004 kb on - strandat 1659.018 kb on + strandat 1659.019 kb on - strandat 1659.019 kb on - strandat 1659.019 kb on - strandat 1659.088 kb on + strandat 1659.089 kb on - strandat 1659.133 kb on + strandat 1659.133 kb on + strandat 1659.133 kb on + strandat 1659.133 kb on + strandat 1659.133 kb on + strandat 1659.134 kb on - strandat 1659.134 kb on - strandat 1659.134 kb on - strandat 1659.134 kb on - strandat 1659.134 kb on - strandat 1659.134 kb on - strandat 1659.145 kb on - strandat 1659.145 kb on - strandat 1659.177 kb on + strandat 1659.177 kb on + strandat 1659.177 kb on + strandat 1659.177 kb on + strandat 1659.177 kb on + strandat 1659.178 kb on - strandat 1659.178 kb on - strandat 1659.178 kb on - strandat 1659.178 kb on - strandat 1659.178 kb on - strandat 1659.178 kb on - strandat 1659.185 kb on + strandat 1659.185 kb on + strandat 1659.185 kb on + strandat 1659.185 kb on + strandat 1659.185 kb on + strandat 1659.185 kb on + strandat 1659.186 kb on - strandat 1659.186 kb on - strandat 1659.186 kb on - strandat 1659.186 kb on - strandat 1659.186 kb on - strandat 1659.186 kb on - strandat 1659.186 kb on - strandat 1659.188 kb on + strandat 1659.188 kb on + strandat 1659.188 kb on + strandat 1659.188 kb on + strandat 1659.188 kb on + strandat 1659.188 kb on + strandat 1659.188 kb on + strandat 1659.188 kb on + strandat 1659.188 kb on + strandat 1659.188 kb on + strandat 1659.188 kb on + strandat 1659.188 kb on + strandat 1659.188 kb on + strandat 1659.188 kb on + strandat 1659.188 kb on + strandat 1659.188 kb on + strandat 1659.189 kb on - strandat 1659.189 kb on - strandat 1659.189 kb on - strandat 1659.189 kb on - strandat 1659.189 kb on - strandat 1659.189 kb on - strandat 1659.189 kb on - strandat 1659.189 kb on - strandat 1659.189 kb on - strandat 1659.247 kb on - strandat 1659.406 kb on + strand, within AO353_07540at 1659.407 kb on - strand, within AO353_07540at 1659.407 kb on - strand, within AO353_07540at 1659.589 kb on + strand, within AO353_07540at 1659.589 kb on + strand, within AO353_07540at 1659.589 kb on + strand, within AO353_07540at 1659.589 kb on + strand, within AO353_07540at 1659.589 kb on + strand, within AO353_07540at 1659.589 kb on + strand, within AO353_07540at 1659.589 kb on + strand, within AO353_07540at 1659.589 kb on + strand, within AO353_07540at 1659.590 kb on - strand, within AO353_07540at 1659.590 kb on - strand, within AO353_07540at 1659.590 kb on - strand, within AO353_07540at 1659.590 kb on - strand, within AO353_07540at 1659.590 kb on - strand, within AO353_07540at 1659.590 kb on - strand, within AO353_07540at 1659.590 kb on - strand, within AO353_07540at 1659.590 kb on - strand, within AO353_07540at 1659.598 kb on + strand, within AO353_07540at 1659.598 kb on + strand, within AO353_07540at 1659.598 kb on + strand, within AO353_07540at 1659.599 kb on - strand, within AO353_07540at 1659.599 kb on - strand, within AO353_07540at 1659.599 kb on - strandat 1659.599 kb on - strand, within AO353_07540at 1659.599 kb on - strand, within AO353_07540at 1659.599 kb on - strand, within AO353_07540at 1659.599 kb on - strand, within AO353_07540at 1659.610 kb on + strand, within AO353_07540at 1659.610 kb on + strand, within AO353_07540at 1659.733 kb on + strand, within AO353_07540at 1659.734 kb on - strand, within AO353_07540at 1659.879 kb on + strand, within AO353_07540at 1659.879 kb on + strand, within AO353_07540at 1659.879 kb on + strand, within AO353_07540at 1659.879 kb on + strand, within AO353_07540at 1659.879 kb on + strand, within AO353_07540at 1659.880 kb on - strand, within AO353_07540at 1659.883 kb on + strand, within AO353_07540at 1659.883 kb on + strand, within AO353_07540at 1659.883 kb on + strand, within AO353_07540at 1659.883 kb on + strand, within AO353_07540at 1659.883 kb on + strand, within AO353_07540at 1659.883 kb on + strand, within AO353_07540at 1659.883 kb on + strand, within AO353_07540at 1659.883 kb on + strand, within AO353_07540at 1659.883 kb on + strand, within AO353_07540at 1659.883 kb on + strand, within AO353_07540at 1659.883 kb on + strand, within AO353_07540at 1659.883 kb on + strand, within AO353_07540at 1659.883 kb on + strand, within AO353_07540at 1659.883 kb on + strand, within AO353_07540at 1659.883 kb on + strand, within AO353_07540at 1659.884 kb on - strand, within AO353_07540at 1659.884 kb on - strand, within AO353_07540at 1659.884 kb on - strand, within AO353_07540at 1659.884 kb on - strand, within AO353_07540at 1659.884 kb on - strand, within AO353_07540at 1659.884 kb on - strand, within AO353_07540at 1659.884 kb on - strand, within AO353_07540at 1659.884 kb on - strand, within AO353_07540at 1659.884 kb on - strand, within AO353_07540at 1659.884 kb on - strand, within AO353_07540at 1659.884 kb on - strand, within AO353_07540at 1659.884 kb on - strand, within AO353_07540at 1659.884 kb on - strand, within AO353_07540at 1659.884 kb on - strand, within AO353_07540at 1659.884 kb on - strand, within AO353_07540at 1659.884 kb on - strand, within AO353_07540at 1659.884 kb on - strand, within AO353_07540

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
remove
1,657,297 + -0.1
1,657,297 + -0.8
1,657,297 + +1.9
1,657,297 + +0.9
1,657,298 - +0.9
1,657,298 - +1.3
1,657,298 - +1.1
1,657,298 - -1.7
1,657,298 - +1.9
1,657,326 + +0.9
1,657,327 - +2.3
1,657,327 - -0.5
1,657,356 + +0.9
1,657,356 + +0.8
1,657,356 + +1.2
1,657,356 + +1.2
1,657,356 + +0.9
1,657,356 + +1.9
1,657,356 + +1.1
1,657,356 + +0.3
1,657,357 - -1.2
1,657,357 - +1.5
1,657,357 - +1.9
1,657,357 - +0.3
1,657,357 - +0.0
1,657,357 - +1.5
1,657,357 - +0.9
1,657,357 - -0.4
1,657,357 - -1.7
1,657,357 - -1.2
1,657,357 - -0.7
1,657,360 + -1.7
1,657,360 + +1.9
1,657,360 + +0.3
1,657,360 + -0.7
1,657,360 + -0.2
1,657,360 + +1.1
1,657,360 + +0.6
1,657,361 - -0.4
1,657,361 - +0.3
1,657,361 - -2.0
1,657,361 - -0.2
1,657,361 - -0.4
1,657,476 + AO353_07530 0.14 -0.2
1,657,476 + AO353_07530 0.14 +1.3
1,657,476 + AO353_07530 0.14 +1.3
1,657,476 + AO353_07530 0.14 +0.9
1,657,476 + AO353_07530 0.14 +0.8
1,657,476 + AO353_07530 0.14 -1.2
1,657,477 - AO353_07530 0.14 -0.7
1,657,477 - AO353_07530 0.14 +0.7
1,657,477 - AO353_07530 0.14 +1.1
1,657,477 - AO353_07530 0.14 +0.3
1,657,477 - AO353_07530 0.14 +1.0
1,657,477 - AO353_07530 0.14 +0.3
1,657,477 - AO353_07530 0.14 +0.3
1,657,615 + AO353_07530 0.33 +0.3
1,657,615 + AO353_07530 0.33 +1.1
1,657,615 + AO353_07530 0.33 +1.1
1,657,615 + AO353_07530 0.33 +1.3
1,657,615 + AO353_07530 0.33 +1.3
1,657,615 + AO353_07530 0.33 +1.5
1,657,615 + AO353_07530 0.33 -1.7
1,657,615 + AO353_07530 0.33 +0.5
1,657,615 + AO353_07530 0.33 -0.9
1,657,615 + AO353_07530 0.33 +0.3
1,657,615 + AO353_07530 0.33 -0.2
1,657,615 + AO353_07530 0.33 -1.0
1,657,615 + AO353_07530 0.33 +1.7
1,657,615 + AO353_07530 0.33 -1.7
1,657,616 - AO353_07530 0.33 +0.3
1,657,616 - AO353_07530 0.33 -0.7
1,657,795 + AO353_07530 0.57 -0.7
1,657,795 + AO353_07530 0.57 +0.0
1,657,796 - AO353_07530 0.57 +0.7
1,657,796 - AO353_07530 0.57 +1.9
1,657,796 - AO353_07530 0.57 +2.3
1,657,797 + AO353_07530 0.57 +1.9
1,657,798 - AO353_07530 0.57 +0.9
1,657,798 - AO353_07530 0.57 -0.2
1,657,798 - AO353_07530 0.57 -0.7
1,657,798 - AO353_07530 0.57 -0.1
1,658,071 + -0.2
1,658,071 + +0.3
1,658,071 + -0.1
1,658,072 - +0.5
1,658,072 - +1.3
1,658,184 + +0.3
1,658,184 + +0.3
1,658,184 + +1.1
1,658,184 + +0.3
1,658,184 + +1.7
1,658,184 + -0.2
1,658,185 - -1.2
1,658,185 - +0.6
1,658,185 - +1.2
1,658,185 - +0.0
1,658,185 - +0.3
1,658,185 - +1.5
1,658,185 - +0.3
1,658,185 - -2.0
1,658,185 - +0.8
1,658,293 + AO353_07535 0.16 -1.7
1,658,293 + AO353_07535 0.16 -1.2
1,658,293 + AO353_07535 0.16 +0.3
1,658,293 + AO353_07535 0.16 -1.7
1,658,293 + AO353_07535 0.16 -1.2
1,658,294 - AO353_07535 0.16 +1.9
1,658,294 - AO353_07535 0.16 -1.0
1,658,294 - AO353_07535 0.16 +0.1
1,658,425 + AO353_07535 0.33 +0.3
1,658,425 + AO353_07535 0.33 -0.7
1,658,425 + AO353_07535 0.33 -0.7
1,658,425 + AO353_07535 0.33 -0.5
1,658,425 + AO353_07535 0.33 +0.6
1,658,425 + -0.7
1,658,425 + AO353_07535 0.33 +0.9
1,658,444 + AO353_07535 0.35 -1.7
1,658,444 + AO353_07535 0.35 +0.3
1,658,444 + AO353_07535 0.35 -2.0
1,658,624 + AO353_07535 0.59 -0.7
1,658,624 + AO353_07535 0.59 -1.0
1,658,625 - AO353_07535 0.59 -0.2
1,658,828 + AO353_07535 0.86 +0.3
1,658,961 - +2.3
1,658,961 - -0.5
1,659,003 + -0.3
1,659,003 + -0.1
1,659,003 + +0.3
1,659,004 - +0.3
1,659,004 - +1.3
1,659,004 - -0.7
1,659,018 + +0.3
1,659,019 - +3.3
1,659,019 - -1.7
1,659,019 - +0.3
1,659,088 + +0.3
1,659,089 - -0.3
1,659,133 + +0.3
1,659,133 + +0.9
1,659,133 + +0.6
1,659,133 + -0.2
1,659,133 + +0.9
1,659,134 - +0.1
1,659,134 - -1.7
1,659,134 - -0.7
1,659,134 - -0.1
1,659,134 - +0.3
1,659,134 - +0.1
1,659,145 - -1.1
1,659,145 - +0.3
1,659,177 + +0.3
1,659,177 + -1.2
1,659,177 + -0.7
1,659,177 + -0.7
1,659,177 + +0.6
1,659,178 - -1.7
1,659,178 - -0.9
1,659,178 - +1.9
1,659,178 - +0.3
1,659,178 - +0.3
1,659,178 - +1.0
1,659,185 + -0.1
1,659,185 + -0.5
1,659,185 + -0.0
1,659,185 + +0.5
1,659,185 + +0.9
1,659,185 + -0.7
1,659,186 - +1.6
1,659,186 - -0.0
1,659,186 - -0.2
1,659,186 - +0.3
1,659,186 - +0.0
1,659,186 - -1.0
1,659,186 - +1.2
1,659,188 + -1.7
1,659,188 + +1.5
1,659,188 + +0.9
1,659,188 + +2.2
1,659,188 + +1.3
1,659,188 + +0.3
1,659,188 + -1.7
1,659,188 + +0.7
1,659,188 + +0.3
1,659,188 + +0.3
1,659,188 + -0.3
1,659,188 + +0.9
1,659,188 + -0.8
1,659,188 + +0.3
1,659,188 + -0.1
1,659,188 + +0.3
1,659,189 - +2.7
1,659,189 - -0.5
1,659,189 - +1.9
1,659,189 - +0.9
1,659,189 - -2.7
1,659,189 - +0.0
1,659,189 - +0.8
1,659,189 - -0.9
1,659,189 - -1.4
1,659,247 - -0.2
1,659,406 + AO353_07540 0.12 +0.3
1,659,407 - AO353_07540 0.12 +1.2
1,659,407 - AO353_07540 0.12 +0.8
1,659,589 + AO353_07540 0.22 +0.7
1,659,589 + AO353_07540 0.22 -0.7
1,659,589 + AO353_07540 0.22 -0.5
1,659,589 + AO353_07540 0.22 +0.9
1,659,589 + AO353_07540 0.22 +1.9
1,659,589 + AO353_07540 0.22 -0.4
1,659,589 + AO353_07540 0.22 +1.6
1,659,589 + AO353_07540 0.22 -0.7
1,659,590 - AO353_07540 0.22 +1.1
1,659,590 - AO353_07540 0.22 +1.7
1,659,590 - AO353_07540 0.22 +0.3
1,659,590 - AO353_07540 0.22 +1.7
1,659,590 - AO353_07540 0.22 +0.0
1,659,590 - AO353_07540 0.22 +0.9
1,659,590 - AO353_07540 0.22 -0.1
1,659,590 - AO353_07540 0.22 +1.3
1,659,598 + AO353_07540 0.22 +1.3
1,659,598 + AO353_07540 0.22 +0.9
1,659,598 + AO353_07540 0.22 -1.2
1,659,599 - AO353_07540 0.22 +0.5
1,659,599 - AO353_07540 0.22 -2.0
1,659,599 - +1.9
1,659,599 - AO353_07540 0.22 -1.1
1,659,599 - AO353_07540 0.22 +0.0
1,659,599 - AO353_07540 0.22 -2.2
1,659,599 - AO353_07540 0.22 -0.7
1,659,610 + AO353_07540 0.23 -1.2
1,659,610 + AO353_07540 0.23 -0.3
1,659,733 + AO353_07540 0.29 +0.1
1,659,734 - AO353_07540 0.29 -1.8
1,659,879 + AO353_07540 0.37 -0.1
1,659,879 + AO353_07540 0.37 +1.8
1,659,879 + AO353_07540 0.37 +0.1
1,659,879 + AO353_07540 0.37 +1.2
1,659,879 + AO353_07540 0.37 +0.8
1,659,880 - AO353_07540 0.37 +0.3
1,659,883 + AO353_07540 0.37 +0.3
1,659,883 + AO353_07540 0.37 +0.3
1,659,883 + AO353_07540 0.37 +0.8
1,659,883 + AO353_07540 0.37 -1.7
1,659,883 + AO353_07540 0.37 -0.2
1,659,883 + AO353_07540 0.37 +1.2
1,659,883 + AO353_07540 0.37 +0.9
1,659,883 + AO353_07540 0.37 +0.3
1,659,883 + AO353_07540 0.37 -0.3
1,659,883 + AO353_07540 0.37 -1.5
1,659,883 + AO353_07540 0.37 -0.9
1,659,883 + AO353_07540 0.37 +0.3
1,659,883 + AO353_07540 0.37 +1.3
1,659,883 + AO353_07540 0.37 -0.7
1,659,883 + AO353_07540 0.37 +2.5
1,659,884 - AO353_07540 0.37 -1.1
1,659,884 - AO353_07540 0.37 +0.3
1,659,884 - AO353_07540 0.37 +0.0
1,659,884 - AO353_07540 0.37 -0.7
1,659,884 - AO353_07540 0.37 -0.7
1,659,884 - AO353_07540 0.37 +1.3
1,659,884 - AO353_07540 0.37 +0.3
1,659,884 - AO353_07540 0.37 -2.2
1,659,884 - AO353_07540 0.37 +1.9
1,659,884 - AO353_07540 0.37 -1.3
1,659,884 - AO353_07540 0.37 -2.2
1,659,884 - AO353_07540 0.37 +0.3
1,659,884 - AO353_07540 0.37 -0.2
1,659,884 - AO353_07540 0.37 -0.7
1,659,884 - AO353_07540 0.37 +0.3
1,659,884 - AO353_07540 0.37 -0.7
1,659,884 - AO353_07540 0.37 +1.2

Or see this region's nucleotide sequence