Experiment: Thallium(I) acetate 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_02285 and AO353_02290 are separated by 103 nucleotides AO353_02290 and AO353_02295 are separated by 194 nucleotides AO353_02295 and AO353_02300 are separated by 82 nucleotides AO353_02300 and AO353_02305 are separated by 343 nucleotides
AO353_02285: AO353_02285 - GTP cyclohydrolase, at 487,147 to 487,692
_02285
AO353_02290: AO353_02290 - glutaredoxin, at 487,796 to 488,167
_02290
AO353_02295: AO353_02295 - GntR family transcriptional regulator, at 488,362 to 489,528
_02295
AO353_02300: AO353_02300 - MarR family transcriptional regulator, at 489,611 to 490,054
_02300
AO353_02305: AO353_02305 - guanine permease, at 490,398 to 491,747
_02305
Position (kb) 488
489
490 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 487.690 kb on + strand at 487.690 kb on + strand at 487.690 kb on + strand at 487.690 kb on + strand at 487.691 kb on - strand at 487.691 kb on - strand at 487.691 kb on - strand at 487.701 kb on - strand at 487.754 kb on + strand at 487.755 kb on - strand at 487.755 kb on - strand at 487.790 kb on + strand at 487.790 kb on + strand at 487.790 kb on + strand at 487.790 kb on + strand at 487.790 kb on + strand at 487.790 kb on + strand at 487.790 kb on + strand at 487.790 kb on + strand at 487.790 kb on + strand at 487.791 kb on - strand at 487.791 kb on - strand at 487.791 kb on - strand at 487.791 kb on - strand at 487.791 kb on - strand at 487.791 kb on - strand at 487.791 kb on - strand at 487.791 kb on - strand at 487.791 kb on - strand at 487.791 kb on - strand at 487.791 kb on - strand at 487.791 kb on - strand at 487.792 kb on + strand at 487.792 kb on + strand at 487.792 kb on + strand at 487.792 kb on + strand at 487.793 kb on - strand at 487.793 kb on - strand at 487.793 kb on - strand at 487.800 kb on + strand at 487.800 kb on + strand at 487.801 kb on - strand at 487.801 kb on - strand at 487.801 kb on - strand at 487.804 kb on - strand at 487.804 kb on - strand at 487.932 kb on - strand, within AO353_02290 at 487.932 kb on - strand, within AO353_02290 at 488.104 kb on + strand, within AO353_02290 at 488.105 kb on - strand, within AO353_02290 at 488.105 kb on - strand, within AO353_02290 at 488.114 kb on + strand, within AO353_02290 at 488.114 kb on + strand, within AO353_02290 at 488.114 kb on + strand, within AO353_02290 at 488.114 kb on + strand, within AO353_02290 at 488.114 kb on + strand, within AO353_02290 at 488.114 kb on + strand, within AO353_02290 at 488.114 kb on + strand, within AO353_02290 at 488.114 kb on + strand, within AO353_02290 at 488.114 kb on + strand, within AO353_02290 at 488.114 kb on + strand, within AO353_02290 at 488.114 kb on + strand, within AO353_02290 at 488.114 kb on + strand, within AO353_02290 at 488.114 kb on + strand, within AO353_02290 at 488.114 kb on + strand, within AO353_02290 at 488.115 kb on - strand, within AO353_02290 at 488.115 kb on - strand, within AO353_02290 at 488.115 kb on - strand, within AO353_02290 at 488.115 kb on - strand, within AO353_02290 at 488.115 kb on - strand, within AO353_02290 at 488.115 kb on - strand, within AO353_02290 at 488.115 kb on - strand, within AO353_02290 at 488.115 kb on - strand, within AO353_02290 at 488.115 kb on - strand, within AO353_02290 at 488.115 kb on - strand, within AO353_02290 at 488.138 kb on + strand at 488.138 kb on + strand at 488.139 kb on - strand at 488.139 kb on - strand at 488.139 kb on - strand at 488.216 kb on + strand at 488.216 kb on + strand at 488.216 kb on + strand at 488.216 kb on + strand at 488.217 kb on - strand at 488.217 kb on - strand at 488.262 kb on + strand at 488.304 kb on + strand at 488.305 kb on - strand at 488.320 kb on + strand at 488.343 kb on - strand at 488.343 kb on - strand at 488.352 kb on + strand at 488.352 kb on + strand at 488.395 kb on + strand at 488.396 kb on - strand at 488.396 kb on - strand at 488.396 kb on - strand at 488.412 kb on + strand at 488.448 kb on + strand at 488.511 kb on + strand, within AO353_02295 at 488.511 kb on + strand, within AO353_02295 at 488.511 kb on + strand, within AO353_02295 at 488.512 kb on - strand, within AO353_02295 at 488.605 kb on + strand at 488.605 kb on + strand, within AO353_02295 at 488.605 kb on + strand, within AO353_02295 at 488.605 kb on + strand, within AO353_02295 at 488.605 kb on + strand, within AO353_02295 at 488.825 kb on + strand, within AO353_02295 at 488.873 kb on + strand, within AO353_02295 at 488.873 kb on + strand, within AO353_02295 at 488.874 kb on - strand, within AO353_02295 at 488.874 kb on - strand, within AO353_02295 at 488.874 kb on - strand, within AO353_02295 at 488.874 kb on - strand, within AO353_02295 at 489.021 kb on - strand, within AO353_02295 at 489.021 kb on - strand, within AO353_02295 at 489.059 kb on + strand, within AO353_02295 at 489.059 kb on + strand, within AO353_02295 at 489.059 kb on + strand, within AO353_02295 at 489.059 kb on + strand, within AO353_02295 at 489.060 kb on - strand, within AO353_02295 at 489.060 kb on - strand, within AO353_02295 at 489.060 kb on - strand, within AO353_02295 at 489.060 kb on - strand, within AO353_02295 at 489.185 kb on + strand, within AO353_02295 at 489.185 kb on + strand, within AO353_02295 at 489.185 kb on + strand, within AO353_02295 at 489.185 kb on + strand, within AO353_02295 at 489.186 kb on - strand, within AO353_02295 at 489.186 kb on - strand, within AO353_02295 at 489.227 kb on + strand, within AO353_02295 at 489.227 kb on + strand, within AO353_02295 at 489.227 kb on + strand, within AO353_02295 at 489.227 kb on + strand, within AO353_02295 at 489.227 kb on + strand, within AO353_02295 at 489.228 kb on - strand, within AO353_02295 at 489.228 kb on - strand, within AO353_02295 at 489.366 kb on - strand, within AO353_02295 at 489.499 kb on - strand at 489.499 kb on - strand at 489.560 kb on + strand at 489.571 kb on - strand at 489.585 kb on - strand at 489.602 kb on + strand at 489.603 kb on - strand at 489.622 kb on + strand at 489.889 kb on + strand, within AO353_02300 at 489.889 kb on + strand, within AO353_02300 at 489.889 kb on + strand, within AO353_02300 at 490.000 kb on - strand, within AO353_02300 at 490.000 kb on - strand, within AO353_02300 at 490.000 kb on - strand, within AO353_02300 at 490.000 kb on - strand, within AO353_02300 at 490.011 kb on + strand at 490.118 kb on - strand at 490.118 kb on - strand at 490.141 kb on - strand at 490.141 kb on - strand at 490.203 kb on + strand at 490.203 kb on + strand at 490.203 kb on + strand at 490.203 kb on + strand at 490.203 kb on + strand at 490.204 kb on - strand at 490.204 kb on - strand at 490.204 kb on - strand at 490.204 kb on - strand at 490.204 kb on - strand at 490.205 kb on + strand at 490.205 kb on + strand at 490.205 kb on + strand at 490.205 kb on + strand at 490.205 kb on + strand at 490.205 kb on + strand at 490.205 kb on + strand at 490.205 kb on + strand at 490.205 kb on + strand at 490.205 kb on + strand at 490.205 kb on + strand at 490.205 kb on + strand at 490.205 kb on + strand at 490.206 kb on - strand at 490.206 kb on - strand at 490.206 kb on - strand at 490.206 kb on - strand at 490.206 kb on - strand at 490.206 kb on - strand at 490.206 kb on - strand at 490.206 kb on - strand at 490.206 kb on - strand at 490.206 kb on - strand at 490.206 kb on - strand at 490.206 kb on - strand at 490.206 kb on - strand at 490.206 kb on - strand at 490.263 kb on - strand at 490.274 kb on + strand at 490.274 kb on + strand at 490.323 kb on + strand at 490.324 kb on - strand at 490.324 kb on - strand at 490.324 kb on - strand at 490.324 kb on - strand at 490.324 kb on - strand at 490.324 kb on - strand at 490.368 kb on + strand at 490.368 kb on + strand at 490.368 kb on + strand at 490.368 kb on + strand at 490.369 kb on - strand at 490.369 kb on - strand at 490.369 kb on - strand at 490.369 kb on - strand at 490.369 kb on - strand at 490.374 kb on + strand at 490.374 kb on + strand at 490.375 kb on - strand at 490.375 kb on - strand at 490.375 kb on - strand at 490.390 kb on + strand at 490.390 kb on + strand at 490.391 kb on - strand at 490.391 kb on - strand at 490.391 kb on - strand at 490.391 kb on - strand at 490.391 kb on - strand at 490.391 kb on - strand at 490.475 kb on + strand at 490.523 kb on + strand at 490.523 kb on + strand at 490.523 kb on + strand at 490.523 kb on + strand at 490.524 kb on - strand at 490.524 kb on - strand at 490.524 kb on - strand at 490.524 kb on - strand at 490.524 kb on - strand at 490.524 kb on - strand at 490.526 kb on + strand at 490.526 kb on + strand at 490.526 kb on + strand at 490.526 kb on + strand at 490.526 kb on + strand at 490.526 kb on + strand at 490.527 kb on - strand at 490.527 kb on - strand at 490.527 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml remove 487,690 + -1.0 487,690 + +1.0 487,690 + -0.7 487,690 + -2.0 487,691 - +0.2 487,691 - -1.0 487,691 - +1.2 487,701 - -1.0 487,754 + +1.0 487,755 - +1.0 487,755 - +0.3 487,790 + -0.0 487,790 + -1.3 487,790 + +1.6 487,790 + +0.4 487,790 + -0.0 487,790 + +2.8 487,790 + +1.6 487,790 + +1.2 487,790 + -0.6 487,791 - -0.0 487,791 - -0.8 487,791 - +0.6 487,791 - +0.5 487,791 - +1.1 487,791 - -1.0 487,791 - +1.6 487,791 - +0.5 487,791 - -0.0 487,791 - +0.8 487,791 - -0.8 487,791 - +0.6 487,792 + +1.6 487,792 + +1.2 487,792 + -0.3 487,792 + +1.6 487,793 - -0.3 487,793 - +0.3 487,793 - -0.4 487,800 + -1.0 487,800 + -0.0 487,801 - +2.6 487,801 - -0.4 487,801 - -1.0 487,804 - -0.0 487,804 - +0.2 487,932 - AO353_02290 0.37 -0.4 487,932 - AO353_02290 0.37 +0.4 488,104 + AO353_02290 0.83 -0.0 488,105 - AO353_02290 0.83 -1.4 488,105 - AO353_02290 0.83 -2.6 488,114 + AO353_02290 0.85 +0.1 488,114 + AO353_02290 0.85 -0.0 488,114 + AO353_02290 0.85 -1.0 488,114 + AO353_02290 0.85 +1.3 488,114 + AO353_02290 0.85 -0.0 488,114 + AO353_02290 0.85 -1.0 488,114 + AO353_02290 0.85 -0.0 488,114 + AO353_02290 0.85 -0.6 488,114 + AO353_02290 0.85 -0.4 488,114 + AO353_02290 0.85 +1.4 488,114 + AO353_02290 0.85 -0.0 488,114 + AO353_02290 0.85 +1.0 488,114 + AO353_02290 0.85 -0.4 488,114 + AO353_02290 0.85 -0.4 488,115 - AO353_02290 0.86 -0.4 488,115 - AO353_02290 0.86 +0.6 488,115 - AO353_02290 0.86 -0.0 488,115 - AO353_02290 0.86 +0.8 488,115 - AO353_02290 0.86 +0.7 488,115 - AO353_02290 0.86 -1.0 488,115 - AO353_02290 0.86 -1.0 488,115 - AO353_02290 0.86 -1.0 488,115 - AO353_02290 0.86 +1.3 488,115 - AO353_02290 0.86 -0.6 488,138 + +0.2 488,138 + +0.3 488,139 - +1.0 488,139 - +2.0 488,139 - -1.4 488,216 + +1.8 488,216 + +0.4 488,216 + +1.0 488,216 + +0.6 488,217 - +1.3 488,217 - -1.4 488,262 + -1.0 488,304 + -0.0 488,305 - -0.4 488,320 + -0.8 488,343 - +1.6 488,343 - +1.0 488,352 + -1.6 488,352 + +0.1 488,395 + -0.8 488,396 - +1.0 488,396 - -0.6 488,396 - +0.2 488,412 + +0.4 488,448 + -1.4 488,511 + AO353_02295 0.13 +1.3 488,511 + AO353_02295 0.13 -1.4 488,511 + AO353_02295 0.13 -0.0 488,512 - AO353_02295 0.13 +1.6 488,605 + -0.0 488,605 + AO353_02295 0.21 +0.6 488,605 + AO353_02295 0.21 +0.2 488,605 + AO353_02295 0.21 +2.9 488,605 + AO353_02295 0.21 +1.4 488,825 + AO353_02295 0.40 +0.2 488,873 + AO353_02295 0.44 -0.0 488,873 + AO353_02295 0.44 +2.0 488,874 - AO353_02295 0.44 -0.2 488,874 - AO353_02295 0.44 -2.0 488,874 - AO353_02295 0.44 -0.0 488,874 - AO353_02295 0.44 -0.6 489,021 - AO353_02295 0.56 +1.0 489,021 - AO353_02295 0.56 -0.4 489,059 + AO353_02295 0.60 -0.4 489,059 + AO353_02295 0.60 -0.6 489,059 + AO353_02295 0.60 +0.6 489,059 + AO353_02295 0.60 +1.3 489,060 - AO353_02295 0.60 -0.9 489,060 - AO353_02295 0.60 -1.8 489,060 - AO353_02295 0.60 -1.6 489,060 - AO353_02295 0.60 +2.6 489,185 + AO353_02295 0.71 +0.6 489,185 + AO353_02295 0.71 +0.6 489,185 + AO353_02295 0.71 +1.0 489,185 + AO353_02295 0.71 +1.8 489,186 - AO353_02295 0.71 +0.7 489,186 - AO353_02295 0.71 -0.6 489,227 + AO353_02295 0.74 -0.4 489,227 + AO353_02295 0.74 +0.4 489,227 + AO353_02295 0.74 +1.0 489,227 + AO353_02295 0.74 -0.0 489,227 + AO353_02295 0.74 -0.8 489,228 - AO353_02295 0.74 +1.0 489,228 - AO353_02295 0.74 +1.0 489,366 - AO353_02295 0.86 +2.1 489,499 - +1.1 489,499 - +2.3 489,560 + -1.0 489,571 - -1.0 489,585 - -0.0 489,602 + +0.4 489,603 - +1.6 489,622 + +2.3 489,889 + AO353_02300 0.63 +0.3 489,889 + AO353_02300 0.63 -1.0 489,889 + AO353_02300 0.63 -2.4 490,000 - AO353_02300 0.88 -0.0 490,000 - AO353_02300 0.88 -0.4 490,000 - AO353_02300 0.88 -1.6 490,000 - AO353_02300 0.88 +0.4 490,011 + +0.3 490,118 - -1.0 490,118 - -0.2 490,141 - -1.6 490,141 - +1.0 490,203 + -0.0 490,203 + -0.8 490,203 + -0.0 490,203 + -2.0 490,203 + +1.2 490,204 - +2.1 490,204 - -1.6 490,204 - -0.4 490,204 - +1.0 490,204 - -0.4 490,205 + -0.0 490,205 + -0.4 490,205 + -1.6 490,205 + -0.8 490,205 + -2.0 490,205 + -0.6 490,205 + +1.0 490,205 + +0.7 490,205 + -0.6 490,205 + -0.4 490,205 + -0.0 490,205 + +2.0 490,205 + -1.6 490,206 - +1.8 490,206 - -0.7 490,206 - +0.6 490,206 - +0.6 490,206 - -1.0 490,206 - +2.8 490,206 - -0.0 490,206 - -1.0 490,206 - +2.3 490,206 - -0.0 490,206 - +1.0 490,206 - +1.6 490,206 - +0.1 490,206 - -0.0 490,263 - -0.0 490,274 + +2.3 490,274 + -1.0 490,323 + +1.6 490,324 - +1.8 490,324 - +0.5 490,324 - +0.6 490,324 - +1.6 490,324 - +1.0 490,324 - -0.4 490,368 + -0.4 490,368 + -1.6 490,368 + -1.6 490,368 + +0.6 490,369 - +2.6 490,369 - +1.4 490,369 - -1.4 490,369 - -0.8 490,369 - -0.6 490,374 + +2.6 490,374 + +1.0 490,375 - +1.0 490,375 - -0.0 490,375 - -0.0 490,390 + +0.2 490,390 + +1.2 490,391 - -0.8 490,391 - +1.6 490,391 - +1.6 490,391 - +1.6 490,391 - +2.0 490,391 - -0.8 490,475 + +1.0 490,523 + +0.7 490,523 + -1.0 490,523 + +1.6 490,523 + -2.0 490,524 - -0.8 490,524 - -0.9 490,524 - +1.4 490,524 - +0.6 490,524 - -0.0 490,524 - +1.0 490,526 + +2.0 490,526 + +1.3 490,526 + +0.6 490,526 + -0.0 490,526 + -0.6 490,526 + -0.7 490,527 - +2.1 490,527 - -0.4 490,527 - -1.0
Or see this region's nucleotide sequence