Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_00235

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_00225 and AO353_00230 overlap by 89 nucleotidesAO353_00230 and AO353_00235 are separated by 65 nucleotidesAO353_00235 and AO353_00240 are separated by 42 nucleotidesAO353_00240 and AO353_00245 are separated by 141 nucleotidesAO353_00245 and AO353_00250 are separated by 92 nucleotides AO353_00225: AO353_00225 - terminase, at 41,662 to 43,713 _00225 AO353_00230: AO353_00230 - terminase, at 43,625 to 44,503 _00230 AO353_00235: AO353_00235 - transcriptional regulator, at 44,569 to 44,826 _00235 AO353_00240: AO353_00240 - hypothetical protein, at 44,869 to 45,048 _00240 AO353_00245: AO353_00245 - XRE family transcriptional regulator, at 45,190 to 45,537 _00245 AO353_00250: AO353_00250 - hypothetical protein, at 45,630 to 45,830 _00250 Position (kb) 44 45Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 43.577 kb on + strandat 43.577 kb on + strandat 43.577 kb on + strandat 43.577 kb on + strandat 43.577 kb on + strandat 43.578 kb on - strandat 43.613 kb on + strandat 43.613 kb on + strandat 43.613 kb on + strandat 43.613 kb on + strandat 43.614 kb on - strandat 43.614 kb on - strandat 43.614 kb on - strandat 43.614 kb on - strandat 43.769 kb on + strand, within AO353_00230at 43.769 kb on + strand, within AO353_00230at 43.769 kb on + strand, within AO353_00230at 43.769 kb on + strand, within AO353_00230at 43.769 kb on + strand, within AO353_00230at 43.769 kb on + strand, within AO353_00230at 43.770 kb on - strand, within AO353_00230at 43.770 kb on - strand, within AO353_00230at 43.770 kb on - strand, within AO353_00230at 43.770 kb on - strand, within AO353_00230at 43.770 kb on - strand, within AO353_00230at 43.770 kb on - strand, within AO353_00230at 43.770 kb on - strand, within AO353_00230at 43.770 kb on - strand, within AO353_00230at 43.770 kb on - strand, within AO353_00230at 43.770 kb on - strand, within AO353_00230at 43.770 kb on - strand, within AO353_00230at 43.770 kb on - strand, within AO353_00230at 43.770 kb on - strand, within AO353_00230at 43.770 kb on - strand, within AO353_00230at 43.949 kb on + strand, within AO353_00230at 43.949 kb on + strand, within AO353_00230at 43.950 kb on - strand, within AO353_00230at 43.970 kb on + strand, within AO353_00230at 43.971 kb on - strand, within AO353_00230at 43.971 kb on - strand, within AO353_00230at 43.971 kb on - strand, within AO353_00230at 43.985 kb on + strand, within AO353_00230at 43.985 kb on + strand, within AO353_00230at 43.985 kb on + strand, within AO353_00230at 43.986 kb on - strand, within AO353_00230at 44.045 kb on + strand, within AO353_00230at 44.045 kb on + strand, within AO353_00230at 44.048 kb on + strand, within AO353_00230at 44.049 kb on - strand, within AO353_00230at 44.049 kb on - strand, within AO353_00230at 44.049 kb on - strand, within AO353_00230at 44.049 kb on - strand, within AO353_00230at 44.049 kb on - strand, within AO353_00230at 44.072 kb on + strand, within AO353_00230at 44.072 kb on + strand, within AO353_00230at 44.072 kb on + strand, within AO353_00230at 44.073 kb on - strand, within AO353_00230at 44.073 kb on - strand, within AO353_00230at 44.082 kb on - strand, within AO353_00230at 44.082 kb on - strand, within AO353_00230at 44.082 kb on - strand, within AO353_00230at 44.375 kb on + strand, within AO353_00230at 44.375 kb on + strand, within AO353_00230at 44.375 kb on + strand, within AO353_00230at 44.375 kb on + strand, within AO353_00230at 44.376 kb on - strand, within AO353_00230at 44.376 kb on - strand, within AO353_00230at 44.376 kb on - strand, within AO353_00230at 44.413 kb on + strand, within AO353_00230at 44.414 kb on - strand, within AO353_00230at 44.434 kb on - strandat 44.624 kb on + strand, within AO353_00235at 44.625 kb on - strand, within AO353_00235at 44.625 kb on - strand, within AO353_00235at 44.647 kb on + strand, within AO353_00235at 44.647 kb on + strand, within AO353_00235at 44.647 kb on + strand, within AO353_00235at 44.647 kb on + strand, within AO353_00235at 44.648 kb on - strand, within AO353_00235at 44.648 kb on - strand, within AO353_00235at 45.092 kb on - strandat 45.092 kb on - strandat 45.092 kb on - strandat 45.092 kb on - strandat 45.092 kb on - strandat 45.092 kb on - strandat 45.092 kb on - strandat 45.092 kb on - strandat 45.092 kb on - strandat 45.092 kb on - strandat 45.092 kb on - strandat 45.092 kb on - strandat 45.095 kb on - strandat 45.095 kb on - strandat 45.095 kb on - strandat 45.095 kb on - strandat 45.095 kb on - strandat 45.095 kb on - strandat 45.095 kb on - strandat 45.148 kb on - strandat 45.148 kb on - strandat 45.148 kb on - strandat 45.148 kb on - strandat 45.148 kb on - strandat 45.148 kb on - strandat 45.148 kb on - strandat 45.192 kb on - strandat 45.604 kb on - strandat 45.604 kb on - strandat 45.604 kb on - strandat 45.630 kb on - strandat 45.630 kb on - strandat 45.684 kb on - strand, within AO353_00250at 45.684 kb on - strand, within AO353_00250at 45.684 kb on - strand, within AO353_00250at 45.684 kb on - strand, within AO353_00250at 45.684 kb on - strand, within AO353_00250at 45.684 kb on - strand, within AO353_00250at 45.684 kb on - strand, within AO353_00250at 45.684 kb on - strand, within AO353_00250at 45.684 kb on - strand, within AO353_00250

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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43,577 + -0.2
43,577 + +2.0
43,577 + +0.6
43,577 + +1.1
43,577 + +1.8
43,578 - +0.6
43,613 + +0.4
43,613 + +0.8
43,613 + -1.2
43,613 + +0.8
43,614 - +1.0
43,614 - +0.1
43,614 - +1.4
43,614 - +0.6
43,769 + AO353_00230 0.16 +0.3
43,769 + AO353_00230 0.16 -0.2
43,769 + AO353_00230 0.16 +1.8
43,769 + AO353_00230 0.16 +1.1
43,769 + AO353_00230 0.16 -0.1
43,769 + AO353_00230 0.16 -0.6
43,770 - AO353_00230 0.16 +1.4
43,770 - AO353_00230 0.16 -0.2
43,770 - AO353_00230 0.16 -1.2
43,770 - AO353_00230 0.16 +1.4
43,770 - AO353_00230 0.16 +0.5
43,770 - AO353_00230 0.16 +0.4
43,770 - AO353_00230 0.16 +0.4
43,770 - AO353_00230 0.16 -0.5
43,770 - AO353_00230 0.16 +1.2
43,770 - AO353_00230 0.16 +0.4
43,770 - AO353_00230 0.16 -0.9
43,770 - AO353_00230 0.16 +1.1
43,770 - AO353_00230 0.16 +2.4
43,770 - AO353_00230 0.16 -0.8
43,949 + AO353_00230 0.37 -0.2
43,949 + AO353_00230 0.37 +3.7
43,950 - AO353_00230 0.37 +1.8
43,970 + AO353_00230 0.39 +0.1
43,971 - AO353_00230 0.39 -0.2
43,971 - AO353_00230 0.39 +1.0
43,971 - AO353_00230 0.39 -0.2
43,985 + AO353_00230 0.41 -0.5
43,985 + AO353_00230 0.41 +0.8
43,985 + AO353_00230 0.41 +1.8
43,986 - AO353_00230 0.41 -1.0
44,045 + AO353_00230 0.48 -0.2
44,045 + AO353_00230 0.48 -0.2
44,048 + AO353_00230 0.48 -1.1
44,049 - AO353_00230 0.48 -0.8
44,049 - AO353_00230 0.48 -1.2
44,049 - AO353_00230 0.48 +0.8
44,049 - AO353_00230 0.48 -0.2
44,049 - AO353_00230 0.48 +0.2
44,072 + AO353_00230 0.51 -0.2
44,072 + AO353_00230 0.51 +0.6
44,072 + AO353_00230 0.51 -1.2
44,073 - AO353_00230 0.51 +0.4
44,073 - AO353_00230 0.51 +1.4
44,082 - AO353_00230 0.52 -0.2
44,082 - AO353_00230 0.52 +0.4
44,082 - AO353_00230 0.52 +1.1
44,375 + AO353_00230 0.85 -0.2
44,375 + AO353_00230 0.85 +0.6
44,375 + AO353_00230 0.85 -0.2
44,375 + AO353_00230 0.85 +0.8
44,376 - AO353_00230 0.85 -0.7
44,376 - AO353_00230 0.85 -1.2
44,376 - AO353_00230 0.85 -0.7
44,413 + AO353_00230 0.90 -0.6
44,414 - AO353_00230 0.90 -0.2
44,434 - +1.7
44,624 + AO353_00235 0.21 -0.2
44,625 - AO353_00235 0.22 -1.0
44,625 - AO353_00235 0.22 -0.9
44,647 + AO353_00235 0.30 -1.2
44,647 + AO353_00235 0.30 +0.4
44,647 + AO353_00235 0.30 -1.8
44,647 + AO353_00235 0.30 -1.8
44,648 - AO353_00235 0.31 +1.0
44,648 - AO353_00235 0.31 +1.1
45,092 - -0.0
45,092 - -0.5
45,092 - -0.8
45,092 - +0.3
45,092 - -1.5
45,092 - -0.2
45,092 - +0.1
45,092 - -0.2
45,092 - -0.2
45,092 - +0.8
45,092 - -0.2
45,092 - -0.2
45,095 - +0.1
45,095 - +0.8
45,095 - +0.8
45,095 - -0.4
45,095 - +1.1
45,095 - -1.2
45,095 - +0.4
45,148 - +0.4
45,148 - +1.8
45,148 - +0.2
45,148 - +0.5
45,148 - -2.5
45,148 - -0.8
45,148 - +1.6
45,192 - +0.1
45,604 - +0.8
45,604 - +0.8
45,604 - +0.8
45,630 - -0.8
45,630 - +1.4
45,684 - AO353_00250 0.27 -1.2
45,684 - AO353_00250 0.27 -2.8
45,684 - AO353_00250 0.27 -0.2
45,684 - AO353_00250 0.27 +0.6
45,684 - AO353_00250 0.27 -0.8
45,684 - AO353_00250 0.27 -0.2
45,684 - AO353_00250 0.27 -0.5
45,684 - AO353_00250 0.27 +0.8
45,684 - AO353_00250 0.27 +1.8

Or see this region's nucleotide sequence