Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS21535

Experiment: L-Proline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS21530 and ABZR86_RS21535 are separated by 1 nucleotidesABZR86_RS21535 and ABZR86_RS21540 are separated by 211 nucleotides ABZR86_RS21530: ABZR86_RS21530 - type II toxin-antitoxin system HipA family toxin, at 272,896 to 274,206 _RS21530 ABZR86_RS21535: ABZR86_RS21535 - hypothetical protein, at 274,208 to 274,576 _RS21535 ABZR86_RS21540: ABZR86_RS21540 - S9 family peptidase, at 274,788 to 276,824 _RS21540 Position (kb) 274 275Strain fitness (log2 ratio) -2 -1 0 1at 273.227 kb on + strand, within ABZR86_RS21530at 273.227 kb on + strand, within ABZR86_RS21530at 273.228 kb on - strand, within ABZR86_RS21530at 273.480 kb on + strand, within ABZR86_RS21530at 273.480 kb on + strand, within ABZR86_RS21530at 273.480 kb on + strand, within ABZR86_RS21530at 273.480 kb on + strand, within ABZR86_RS21530at 273.481 kb on - strand, within ABZR86_RS21530at 273.481 kb on - strand, within ABZR86_RS21530at 273.481 kb on - strand, within ABZR86_RS21530at 273.481 kb on - strand, within ABZR86_RS21530at 273.481 kb on - strand, within ABZR86_RS21530at 273.481 kb on - strand, within ABZR86_RS21530at 273.483 kb on + strand, within ABZR86_RS21530at 273.483 kb on + strand, within ABZR86_RS21530at 273.483 kb on + strand, within ABZR86_RS21530at 273.483 kb on + strand, within ABZR86_RS21530at 273.483 kb on + strand, within ABZR86_RS21530at 273.483 kb on + strand, within ABZR86_RS21530at 273.483 kb on + strand, within ABZR86_RS21530at 273.483 kb on + strand, within ABZR86_RS21530at 273.484 kb on - strand, within ABZR86_RS21530at 273.484 kb on - strand, within ABZR86_RS21530at 273.625 kb on - strand, within ABZR86_RS21530at 273.625 kb on - strand, within ABZR86_RS21530at 273.625 kb on - strand, within ABZR86_RS21530at 273.625 kb on - strand, within ABZR86_RS21530at 273.893 kb on + strand, within ABZR86_RS21530at 273.894 kb on - strand, within ABZR86_RS21530at 273.894 kb on - strand, within ABZR86_RS21530at 273.894 kb on - strand, within ABZR86_RS21530at 273.896 kb on + strand, within ABZR86_RS21530at 273.896 kb on + strand, within ABZR86_RS21530at 273.897 kb on - strand, within ABZR86_RS21530at 273.897 kb on - strand, within ABZR86_RS21530at 273.902 kb on + strand, within ABZR86_RS21530at 273.902 kb on + strand, within ABZR86_RS21530at 273.902 kb on + strand, within ABZR86_RS21530at 273.902 kb on + strand, within ABZR86_RS21530at 273.902 kb on + strand, within ABZR86_RS21530at 273.902 kb on + strand, within ABZR86_RS21530at 273.903 kb on - strand, within ABZR86_RS21530at 273.903 kb on - strand, within ABZR86_RS21530at 273.903 kb on - strand, within ABZR86_RS21530at 274.100 kb on + strandat 274.151 kb on + strandat 274.151 kb on + strandat 274.151 kb on + strandat 274.151 kb on + strandat 274.151 kb on + strandat 274.152 kb on - strandat 274.152 kb on - strandat 274.152 kb on - strandat 274.152 kb on - strandat 274.152 kb on - strandat 274.152 kb on - strandat 274.178 kb on + strandat 274.178 kb on + strandat 274.179 kb on - strandat 274.179 kb on - strandat 274.179 kb on - strandat 274.582 kb on + strandat 274.618 kb on - strandat 274.622 kb on - strandat 274.993 kb on + strand, within ABZR86_RS21540at 274.993 kb on + strand, within ABZR86_RS21540at 274.993 kb on + strand, within ABZR86_RS21540at 274.993 kb on + strand, within ABZR86_RS21540at 274.993 kb on + strand, within ABZR86_RS21540at 274.993 kb on + strand, within ABZR86_RS21540at 274.993 kb on + strand, within ABZR86_RS21540at 274.993 kb on + strand, within ABZR86_RS21540at 274.993 kb on + strand, within ABZR86_RS21540at 274.993 kb on + strand, within ABZR86_RS21540at 274.993 kb on + strand, within ABZR86_RS21540at 274.993 kb on + strand, within ABZR86_RS21540at 274.993 kb on + strand, within ABZR86_RS21540at 274.993 kb on + strand, within ABZR86_RS21540at 274.994 kb on - strand, within ABZR86_RS21540at 274.994 kb on - strand, within ABZR86_RS21540at 274.994 kb on - strand, within ABZR86_RS21540at 274.994 kb on - strand, within ABZR86_RS21540at 274.994 kb on - strand, within ABZR86_RS21540at 274.994 kb on - strand, within ABZR86_RS21540at 274.994 kb on - strand, within ABZR86_RS21540at 274.994 kb on - strand, within ABZR86_RS21540at 275.182 kb on + strand, within ABZR86_RS21540at 275.182 kb on + strand, within ABZR86_RS21540at 275.182 kb on + strand, within ABZR86_RS21540at 275.183 kb on - strand, within ABZR86_RS21540at 275.183 kb on - strand, within ABZR86_RS21540at 275.183 kb on - strand, within ABZR86_RS21540at 275.446 kb on + strand, within ABZR86_RS21540at 275.446 kb on + strand, within ABZR86_RS21540at 275.446 kb on + strand, within ABZR86_RS21540at 275.446 kb on + strand, within ABZR86_RS21540at 275.447 kb on - strand, within ABZR86_RS21540at 275.447 kb on - strand, within ABZR86_RS21540at 275.447 kb on - strand, within ABZR86_RS21540at 275.447 kb on - strand, within ABZR86_RS21540at 275.447 kb on - strand, within ABZR86_RS21540at 275.447 kb on - strand, within ABZR86_RS21540at 275.447 kb on - strand, within ABZR86_RS21540at 275.447 kb on - strand, within ABZR86_RS21540at 275.447 kb on - strand, within ABZR86_RS21540at 275.447 kb on - strand, within ABZR86_RS21540at 275.476 kb on + strand, within ABZR86_RS21540at 275.476 kb on + strand, within ABZR86_RS21540at 275.476 kb on + strand, within ABZR86_RS21540at 275.477 kb on - strand, within ABZR86_RS21540at 275.477 kb on - strand, within ABZR86_RS21540at 275.497 kb on + strand, within ABZR86_RS21540at 275.524 kb on + strand, within ABZR86_RS21540at 275.525 kb on - strand, within ABZR86_RS21540at 275.525 kb on - strand, within ABZR86_RS21540at 275.533 kb on + strand, within ABZR86_RS21540at 275.533 kb on + strand, within ABZR86_RS21540at 275.534 kb on - strand, within ABZR86_RS21540at 275.534 kb on - strand, within ABZR86_RS21540at 275.539 kb on + strand, within ABZR86_RS21540at 275.539 kb on + strand, within ABZR86_RS21540at 275.539 kb on + strand, within ABZR86_RS21540at 275.539 kb on + strand, within ABZR86_RS21540at 275.539 kb on + strand, within ABZR86_RS21540at 275.539 kb on + strand, within ABZR86_RS21540at 275.540 kb on - strand, within ABZR86_RS21540at 275.540 kb on - strand, within ABZR86_RS21540at 275.540 kb on - strand, within ABZR86_RS21540at 275.540 kb on - strand, within ABZR86_RS21540at 275.540 kb on - strand, within ABZR86_RS21540at 275.540 kb on - strand, within ABZR86_RS21540

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (C)
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273,227 + ABZR86_RS21530 0.25 +0.4
273,227 + ABZR86_RS21530 0.25 +0.3
273,228 - ABZR86_RS21530 0.25 -0.6
273,480 + ABZR86_RS21530 0.45 -0.2
273,480 + ABZR86_RS21530 0.45 -0.2
273,480 + ABZR86_RS21530 0.45 -0.5
273,480 + ABZR86_RS21530 0.45 +0.2
273,481 - ABZR86_RS21530 0.45 +0.3
273,481 - ABZR86_RS21530 0.45 -0.9
273,481 - ABZR86_RS21530 0.45 -0.6
273,481 - ABZR86_RS21530 0.45 -0.6
273,481 - ABZR86_RS21530 0.45 +0.5
273,481 - ABZR86_RS21530 0.45 +0.9
273,483 + ABZR86_RS21530 0.45 +0.9
273,483 + ABZR86_RS21530 0.45 -0.5
273,483 + ABZR86_RS21530 0.45 +0.3
273,483 + ABZR86_RS21530 0.45 +1.6
273,483 + ABZR86_RS21530 0.45 +0.5
273,483 + ABZR86_RS21530 0.45 +0.7
273,483 + ABZR86_RS21530 0.45 +0.0
273,483 + ABZR86_RS21530 0.45 +0.9
273,484 - ABZR86_RS21530 0.45 +0.2
273,484 - ABZR86_RS21530 0.45 -0.4
273,625 - ABZR86_RS21530 0.56 -0.1
273,625 - ABZR86_RS21530 0.56 -0.6
273,625 - ABZR86_RS21530 0.56 +0.2
273,625 - ABZR86_RS21530 0.56 -0.4
273,893 + ABZR86_RS21530 0.76 +0.0
273,894 - ABZR86_RS21530 0.76 -2.3
273,894 - ABZR86_RS21530 0.76 -0.2
273,894 - ABZR86_RS21530 0.76 -0.3
273,896 + ABZR86_RS21530 0.76 +0.1
273,896 + ABZR86_RS21530 0.76 -0.4
273,897 - ABZR86_RS21530 0.76 +0.2
273,897 - ABZR86_RS21530 0.76 +0.4
273,902 + ABZR86_RS21530 0.77 -0.7
273,902 + ABZR86_RS21530 0.77 -0.5
273,902 + ABZR86_RS21530 0.77 +0.4
273,902 + ABZR86_RS21530 0.77 -0.2
273,902 + ABZR86_RS21530 0.77 -0.1
273,902 + ABZR86_RS21530 0.77 -0.1
273,903 - ABZR86_RS21530 0.77 -0.3
273,903 - ABZR86_RS21530 0.77 -0.8
273,903 - ABZR86_RS21530 0.77 -0.4
274,100 + -0.4
274,151 + -0.3
274,151 + +0.1
274,151 + +0.5
274,151 + -0.0
274,151 + +0.1
274,152 - +0.0
274,152 - -0.4
274,152 - -0.7
274,152 - +0.8
274,152 - -0.6
274,152 - +0.5
274,178 + +0.4
274,178 + -0.2
274,179 - +0.3
274,179 - +1.0
274,179 - -0.4
274,582 + -0.1
274,618 - +0.5
274,622 - -0.2
274,993 + ABZR86_RS21540 0.10 +0.1
274,993 + ABZR86_RS21540 0.10 -0.3
274,993 + ABZR86_RS21540 0.10 -0.0
274,993 + ABZR86_RS21540 0.10 +0.7
274,993 + ABZR86_RS21540 0.10 -0.3
274,993 + ABZR86_RS21540 0.10 -1.0
274,993 + ABZR86_RS21540 0.10 +0.3
274,993 + ABZR86_RS21540 0.10 -0.1
274,993 + ABZR86_RS21540 0.10 -0.4
274,993 + ABZR86_RS21540 0.10 -0.4
274,993 + ABZR86_RS21540 0.10 -0.3
274,993 + ABZR86_RS21540 0.10 +0.3
274,993 + ABZR86_RS21540 0.10 -0.3
274,993 + ABZR86_RS21540 0.10 -0.2
274,994 - ABZR86_RS21540 0.10 +0.0
274,994 - ABZR86_RS21540 0.10 +0.6
274,994 - ABZR86_RS21540 0.10 -0.0
274,994 - ABZR86_RS21540 0.10 +0.4
274,994 - ABZR86_RS21540 0.10 +0.3
274,994 - ABZR86_RS21540 0.10 -0.2
274,994 - ABZR86_RS21540 0.10 -0.6
274,994 - ABZR86_RS21540 0.10 -0.2
275,182 + ABZR86_RS21540 0.19 +0.2
275,182 + ABZR86_RS21540 0.19 -0.4
275,182 + ABZR86_RS21540 0.19 +0.5
275,183 - ABZR86_RS21540 0.19 -0.6
275,183 - ABZR86_RS21540 0.19 -0.0
275,183 - ABZR86_RS21540 0.19 +0.7
275,446 + ABZR86_RS21540 0.32 -0.9
275,446 + ABZR86_RS21540 0.32 +0.1
275,446 + ABZR86_RS21540 0.32 -0.6
275,446 + ABZR86_RS21540 0.32 +0.5
275,447 - ABZR86_RS21540 0.32 +0.9
275,447 - ABZR86_RS21540 0.32 -0.4
275,447 - ABZR86_RS21540 0.32 -1.7
275,447 - ABZR86_RS21540 0.32 -0.1
275,447 - ABZR86_RS21540 0.32 -0.7
275,447 - ABZR86_RS21540 0.32 -0.5
275,447 - ABZR86_RS21540 0.32 -0.0
275,447 - ABZR86_RS21540 0.32 -0.0
275,447 - ABZR86_RS21540 0.32 +0.9
275,447 - ABZR86_RS21540 0.32 -0.1
275,476 + ABZR86_RS21540 0.34 +0.3
275,476 + ABZR86_RS21540 0.34 +0.6
275,476 + ABZR86_RS21540 0.34 -1.1
275,477 - ABZR86_RS21540 0.34 +1.3
275,477 - ABZR86_RS21540 0.34 +0.3
275,497 + ABZR86_RS21540 0.35 -0.3
275,524 + ABZR86_RS21540 0.36 -1.8
275,525 - ABZR86_RS21540 0.36 -0.3
275,525 - ABZR86_RS21540 0.36 -0.4
275,533 + ABZR86_RS21540 0.37 +0.4
275,533 + ABZR86_RS21540 0.37 -0.5
275,534 - ABZR86_RS21540 0.37 -0.9
275,534 - ABZR86_RS21540 0.37 -0.5
275,539 + ABZR86_RS21540 0.37 -0.8
275,539 + ABZR86_RS21540 0.37 -0.5
275,539 + ABZR86_RS21540 0.37 -0.8
275,539 + ABZR86_RS21540 0.37 -0.6
275,539 + ABZR86_RS21540 0.37 -2.3
275,539 + ABZR86_RS21540 0.37 -1.3
275,540 - ABZR86_RS21540 0.37 -0.0
275,540 - ABZR86_RS21540 0.37 -0.1
275,540 - ABZR86_RS21540 0.37 -0.1
275,540 - ABZR86_RS21540 0.37 +0.5
275,540 - ABZR86_RS21540 0.37 -0.2
275,540 - ABZR86_RS21540 0.37 -1.5

Or see this region's nucleotide sequence