Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS11400

Experiment: L-Proline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS11395 and ABZR86_RS11400 are separated by 42 nucleotidesABZR86_RS11400 and ABZR86_RS11405 are separated by 38 nucleotidesABZR86_RS11405 and ABZR86_RS11410 overlap by 4 nucleotides ABZR86_RS11395: ABZR86_RS11395 - TcpQ domain-containing protein, at 2,544,975 to 2,545,442 _RS11395 ABZR86_RS11400: ABZR86_RS11400 - virB8 family protein, at 2,545,485 to 2,546,462 _RS11400 ABZR86_RS11405: ABZR86_RS11405 - TrbG/VirB9 family P-type conjugative transfer protein, at 2,546,501 to 2,547,229 _RS11405 ABZR86_RS11410: ABZR86_RS11410 - TrbI/VirB10 family protein, at 2,547,226 to 2,548,470 _RS11410 Position (kb) 2545 2546 2547Strain fitness (log2 ratio) -2 -1 0 1 2at 2544.610 kb on - strandat 2544.618 kb on + strandat 2544.622 kb on + strandat 2544.623 kb on - strandat 2544.623 kb on - strandat 2544.623 kb on - strandat 2544.646 kb on + strandat 2544.673 kb on - strandat 2544.673 kb on - strandat 2544.923 kb on - strandat 2544.957 kb on - strandat 2544.963 kb on + strandat 2545.012 kb on + strandat 2545.013 kb on - strandat 2545.131 kb on + strand, within ABZR86_RS11395at 2545.131 kb on + strand, within ABZR86_RS11395at 2545.131 kb on + strand, within ABZR86_RS11395at 2545.132 kb on - strand, within ABZR86_RS11395at 2545.140 kb on + strand, within ABZR86_RS11395at 2545.140 kb on + strand, within ABZR86_RS11395at 2545.141 kb on - strand, within ABZR86_RS11395at 2545.216 kb on - strand, within ABZR86_RS11395at 2545.216 kb on - strand, within ABZR86_RS11395at 2545.234 kb on - strand, within ABZR86_RS11395at 2545.243 kb on - strand, within ABZR86_RS11395at 2545.308 kb on + strand, within ABZR86_RS11395at 2545.308 kb on + strand, within ABZR86_RS11395at 2545.308 kb on + strand, within ABZR86_RS11395at 2545.308 kb on + strand, within ABZR86_RS11395at 2545.309 kb on - strand, within ABZR86_RS11395at 2545.309 kb on - strand, within ABZR86_RS11395at 2545.440 kb on + strandat 2545.440 kb on + strandat 2545.440 kb on + strandat 2545.440 kb on + strandat 2545.647 kb on + strand, within ABZR86_RS11400at 2545.647 kb on + strand, within ABZR86_RS11400at 2545.647 kb on + strand, within ABZR86_RS11400at 2545.647 kb on + strand, within ABZR86_RS11400at 2545.647 kb on + strand, within ABZR86_RS11400at 2545.648 kb on - strand, within ABZR86_RS11400at 2545.648 kb on - strand, within ABZR86_RS11400at 2545.677 kb on + strand, within ABZR86_RS11400at 2545.677 kb on + strand, within ABZR86_RS11400at 2545.678 kb on - strand, within ABZR86_RS11400at 2545.698 kb on + strand, within ABZR86_RS11400at 2545.930 kb on - strand, within ABZR86_RS11400at 2545.938 kb on + strand, within ABZR86_RS11400at 2545.938 kb on + strand, within ABZR86_RS11400at 2545.938 kb on + strand, within ABZR86_RS11400at 2545.939 kb on - strand, within ABZR86_RS11400at 2545.939 kb on - strand, within ABZR86_RS11400at 2546.046 kb on + strand, within ABZR86_RS11400at 2546.046 kb on + strand, within ABZR86_RS11400at 2546.047 kb on - strand, within ABZR86_RS11400at 2546.047 kb on - strand, within ABZR86_RS11400at 2546.433 kb on - strandat 2546.479 kb on - strandat 2546.552 kb on + strandat 2546.553 kb on - strandat 2546.553 kb on - strandat 2546.576 kb on + strand, within ABZR86_RS11405at 2546.577 kb on - strand, within ABZR86_RS11405at 2546.577 kb on - strand, within ABZR86_RS11405at 2546.645 kb on + strand, within ABZR86_RS11405at 2546.699 kb on + strand, within ABZR86_RS11405at 2546.700 kb on - strand, within ABZR86_RS11405at 2546.762 kb on + strand, within ABZR86_RS11405at 2546.762 kb on + strand, within ABZR86_RS11405at 2546.762 kb on + strand, within ABZR86_RS11405at 2546.763 kb on - strand, within ABZR86_RS11405at 2546.763 kb on - strand, within ABZR86_RS11405at 2546.763 kb on - strand, within ABZR86_RS11405at 2546.763 kb on - strand, within ABZR86_RS11405at 2546.834 kb on + strand, within ABZR86_RS11405at 2546.853 kb on - strand, within ABZR86_RS11405at 2546.940 kb on - strand, within ABZR86_RS11405at 2546.957 kb on + strand, within ABZR86_RS11405at 2547.009 kb on - strand, within ABZR86_RS11405at 2547.029 kb on + strand, within ABZR86_RS11405at 2547.029 kb on + strand, within ABZR86_RS11405at 2547.030 kb on - strand, within ABZR86_RS11405at 2547.030 kb on - strand, within ABZR86_RS11405at 2547.083 kb on + strand, within ABZR86_RS11405at 2547.164 kb on + strandat 2547.164 kb on + strandat 2547.165 kb on - strandat 2547.201 kb on + strandat 2547.201 kb on + strandat 2547.202 kb on - strandat 2547.244 kb on + strandat 2547.245 kb on - strandat 2547.245 kb on - strandat 2547.317 kb on - strandat 2547.328 kb on + strandat 2547.328 kb on + strandat 2547.328 kb on + strandat 2547.328 kb on + strandat 2547.329 kb on - strandat 2547.329 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (C)
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2,544,610 - +0.0
2,544,618 + -0.4
2,544,622 + -0.1
2,544,623 - +0.4
2,544,623 - +0.1
2,544,623 - +0.5
2,544,646 + -0.7
2,544,673 - +0.9
2,544,673 - +0.5
2,544,923 - +0.1
2,544,957 - -2.0
2,544,963 + -1.5
2,545,012 + -1.2
2,545,013 - -0.5
2,545,131 + ABZR86_RS11395 0.33 -0.2
2,545,131 + ABZR86_RS11395 0.33 -0.4
2,545,131 + ABZR86_RS11395 0.33 +0.6
2,545,132 - ABZR86_RS11395 0.34 -0.9
2,545,140 + ABZR86_RS11395 0.35 -0.3
2,545,140 + ABZR86_RS11395 0.35 +1.7
2,545,141 - ABZR86_RS11395 0.35 -0.6
2,545,216 - ABZR86_RS11395 0.51 +0.3
2,545,216 - ABZR86_RS11395 0.51 -0.2
2,545,234 - ABZR86_RS11395 0.55 +1.0
2,545,243 - ABZR86_RS11395 0.57 +0.9
2,545,308 + ABZR86_RS11395 0.71 -0.4
2,545,308 + ABZR86_RS11395 0.71 -0.7
2,545,308 + ABZR86_RS11395 0.71 -1.3
2,545,308 + ABZR86_RS11395 0.71 -1.1
2,545,309 - ABZR86_RS11395 0.71 +0.9
2,545,309 - ABZR86_RS11395 0.71 +0.4
2,545,440 + -0.1
2,545,440 + -1.2
2,545,440 + -0.3
2,545,440 + +2.1
2,545,647 + ABZR86_RS11400 0.17 +0.1
2,545,647 + ABZR86_RS11400 0.17 +0.4
2,545,647 + ABZR86_RS11400 0.17 +0.9
2,545,647 + ABZR86_RS11400 0.17 -1.5
2,545,647 + ABZR86_RS11400 0.17 +0.7
2,545,648 - ABZR86_RS11400 0.17 +0.3
2,545,648 - ABZR86_RS11400 0.17 +0.2
2,545,677 + ABZR86_RS11400 0.20 -0.6
2,545,677 + ABZR86_RS11400 0.20 -0.5
2,545,678 - ABZR86_RS11400 0.20 -0.2
2,545,698 + ABZR86_RS11400 0.22 -0.5
2,545,930 - ABZR86_RS11400 0.46 -0.3
2,545,938 + ABZR86_RS11400 0.46 +0.0
2,545,938 + ABZR86_RS11400 0.46 -0.2
2,545,938 + ABZR86_RS11400 0.46 +0.2
2,545,939 - ABZR86_RS11400 0.46 -0.8
2,545,939 - ABZR86_RS11400 0.46 -0.3
2,546,046 + ABZR86_RS11400 0.57 +1.4
2,546,046 + ABZR86_RS11400 0.57 +0.6
2,546,047 - ABZR86_RS11400 0.57 -0.1
2,546,047 - ABZR86_RS11400 0.57 -0.5
2,546,433 - +0.0
2,546,479 - +0.8
2,546,552 + +0.3
2,546,553 - +0.2
2,546,553 - +0.4
2,546,576 + ABZR86_RS11405 0.10 +0.6
2,546,577 - ABZR86_RS11405 0.10 +0.2
2,546,577 - ABZR86_RS11405 0.10 +0.4
2,546,645 + ABZR86_RS11405 0.20 +1.4
2,546,699 + ABZR86_RS11405 0.27 +1.1
2,546,700 - ABZR86_RS11405 0.27 -0.5
2,546,762 + ABZR86_RS11405 0.36 +0.1
2,546,762 + ABZR86_RS11405 0.36 +0.0
2,546,762 + ABZR86_RS11405 0.36 +0.7
2,546,763 - ABZR86_RS11405 0.36 -0.2
2,546,763 - ABZR86_RS11405 0.36 -0.1
2,546,763 - ABZR86_RS11405 0.36 +0.2
2,546,763 - ABZR86_RS11405 0.36 -0.2
2,546,834 + ABZR86_RS11405 0.46 +0.0
2,546,853 - ABZR86_RS11405 0.48 +0.1
2,546,940 - ABZR86_RS11405 0.60 +0.2
2,546,957 + ABZR86_RS11405 0.63 -1.2
2,547,009 - ABZR86_RS11405 0.70 +1.1
2,547,029 + ABZR86_RS11405 0.72 +0.1
2,547,029 + ABZR86_RS11405 0.72 +0.2
2,547,030 - ABZR86_RS11405 0.73 +0.8
2,547,030 - ABZR86_RS11405 0.73 +0.8
2,547,083 + ABZR86_RS11405 0.80 +0.1
2,547,164 + -1.1
2,547,164 + +0.2
2,547,165 - -0.0
2,547,201 + +0.2
2,547,201 + -0.2
2,547,202 - -0.7
2,547,244 + +0.3
2,547,245 - -0.8
2,547,245 - +0.1
2,547,317 - +0.6
2,547,328 + +0.3
2,547,328 + +0.0
2,547,328 + +0.1
2,547,328 + -0.7
2,547,329 - +0.0
2,547,329 - -0.4

Or see this region's nucleotide sequence