Experiment: L-Proline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS09175 and ABZR86_RS09180 are separated by 184 nucleotides ABZR86_RS09180 and ABZR86_RS09185 are separated by 31 nucleotides ABZR86_RS09185 and ABZR86_RS09190 are separated by 5 nucleotides ABZR86_RS09190 and ABZR86_RS09195 overlap by 4 nucleotides
ABZR86_RS09175: ABZR86_RS09175 - catecholate siderophore receptor Fiu, at 2,039,667 to 2,041,994
_RS09175
ABZR86_RS09180: ABZR86_RS09180 - Fe2+-dependent dioxygenase, at 2,042,179 to 2,042,859
_RS09180
ABZR86_RS09185: ABZR86_RS09185 - GspH/FimT family pseudopilin, at 2,042,891 to 2,043,481
_RS09185
ABZR86_RS09190: ABZR86_RS09190 - type IV pilin protein, at 2,043,487 to 2,043,918
_RS09190
ABZR86_RS09195: ABZR86_RS09195 - PilC/PilY family type IV pilus protein, at 2,043,915 to 2,048,165
_RS09195
Position (kb)
2042
2043
2044 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2041.908 kb on + strand at 2041.908 kb on + strand at 2041.909 kb on - strand at 2041.941 kb on + strand at 2041.942 kb on - strand at 2041.942 kb on - strand at 2041.943 kb on + strand at 2041.943 kb on + strand at 2041.944 kb on - strand at 2041.967 kb on + strand at 2041.967 kb on + strand at 2041.968 kb on - strand at 2042.028 kb on - strand at 2042.186 kb on + strand at 2042.186 kb on + strand at 2042.186 kb on + strand at 2042.186 kb on + strand at 2042.186 kb on + strand at 2042.187 kb on - strand at 2042.187 kb on - strand at 2042.187 kb on - strand at 2042.187 kb on - strand at 2042.190 kb on + strand at 2042.190 kb on + strand at 2042.190 kb on + strand at 2042.191 kb on - strand at 2042.191 kb on - strand at 2042.387 kb on - strand, within ABZR86_RS09180 at 2042.437 kb on + strand, within ABZR86_RS09180 at 2042.554 kb on + strand, within ABZR86_RS09180 at 2042.587 kb on + strand, within ABZR86_RS09180 at 2042.587 kb on + strand, within ABZR86_RS09180 at 2042.588 kb on - strand, within ABZR86_RS09180 at 2042.588 kb on - strand, within ABZR86_RS09180 at 2042.588 kb on - strand, within ABZR86_RS09180 at 2042.588 kb on - strand, within ABZR86_RS09180 at 2042.633 kb on - strand, within ABZR86_RS09180 at 2042.824 kb on + strand at 2043.171 kb on + strand, within ABZR86_RS09185 at 2043.171 kb on + strand, within ABZR86_RS09185 at 2043.205 kb on - strand, within ABZR86_RS09185 at 2043.209 kb on - strand, within ABZR86_RS09185 at 2043.210 kb on + strand, within ABZR86_RS09185 at 2043.210 kb on + strand, within ABZR86_RS09185 at 2043.211 kb on - strand, within ABZR86_RS09185 at 2043.211 kb on - strand, within ABZR86_RS09185 at 2043.322 kb on - strand, within ABZR86_RS09185 at 2043.650 kb on + strand, within ABZR86_RS09190 at 2043.650 kb on + strand, within ABZR86_RS09190 at 2043.650 kb on + strand, within ABZR86_RS09190 at 2043.651 kb on - strand, within ABZR86_RS09190 at 2043.651 kb on - strand, within ABZR86_RS09190 at 2043.651 kb on - strand, within ABZR86_RS09190 at 2043.651 kb on - strand, within ABZR86_RS09190 at 2043.651 kb on - strand, within ABZR86_RS09190 at 2043.651 kb on - strand, within ABZR86_RS09190 at 2043.651 kb on - strand, within ABZR86_RS09190 at 2043.653 kb on + strand, within ABZR86_RS09190 at 2043.654 kb on - strand, within ABZR86_RS09190 at 2043.714 kb on + strand, within ABZR86_RS09190 at 2043.726 kb on - strand, within ABZR86_RS09190 at 2043.807 kb on - strand, within ABZR86_RS09190 at 2043.923 kb on + strand at 2043.924 kb on - strand at 2044.318 kb on + strand at 2044.318 kb on + strand at 2044.460 kb on - strand, within ABZR86_RS09195
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (C) remove 2,041,908 + +0.9 2,041,908 + -0.1 2,041,909 - +0.1 2,041,941 + +0.0 2,041,942 - +0.7 2,041,942 - +0.5 2,041,943 + +0.5 2,041,943 + +0.1 2,041,944 - +0.5 2,041,967 + -1.1 2,041,967 + -0.4 2,041,968 - -0.1 2,042,028 - +0.0 2,042,186 + -0.1 2,042,186 + -0.1 2,042,186 + -0.2 2,042,186 + +0.5 2,042,186 + +0.1 2,042,187 - +0.7 2,042,187 - +0.4 2,042,187 - -0.7 2,042,187 - -0.1 2,042,190 + -0.8 2,042,190 + +0.7 2,042,190 + +0.1 2,042,191 - -0.4 2,042,191 - -1.4 2,042,387 - ABZR86_RS09180 0.31 +0.6 2,042,437 + ABZR86_RS09180 0.38 -0.2 2,042,554 + ABZR86_RS09180 0.55 -0.1 2,042,587 + ABZR86_RS09180 0.60 +0.1 2,042,587 + ABZR86_RS09180 0.60 +0.2 2,042,588 - ABZR86_RS09180 0.60 +0.1 2,042,588 - ABZR86_RS09180 0.60 +0.6 2,042,588 - ABZR86_RS09180 0.60 +1.1 2,042,588 - ABZR86_RS09180 0.60 +0.2 2,042,633 - ABZR86_RS09180 0.67 -0.1 2,042,824 + -0.4 2,043,171 + ABZR86_RS09185 0.47 +1.1 2,043,171 + ABZR86_RS09185 0.47 +2.2 2,043,205 - ABZR86_RS09185 0.53 -1.0 2,043,209 - ABZR86_RS09185 0.54 -0.1 2,043,210 + ABZR86_RS09185 0.54 +0.3 2,043,210 + ABZR86_RS09185 0.54 +0.0 2,043,211 - ABZR86_RS09185 0.54 -0.3 2,043,211 - ABZR86_RS09185 0.54 +0.8 2,043,322 - ABZR86_RS09185 0.73 +0.3 2,043,650 + ABZR86_RS09190 0.38 +0.6 2,043,650 + ABZR86_RS09190 0.38 +1.9 2,043,650 + ABZR86_RS09190 0.38 +0.7 2,043,651 - ABZR86_RS09190 0.38 +0.1 2,043,651 - ABZR86_RS09190 0.38 +1.0 2,043,651 - ABZR86_RS09190 0.38 -2.3 2,043,651 - ABZR86_RS09190 0.38 -0.6 2,043,651 - ABZR86_RS09190 0.38 -0.1 2,043,651 - ABZR86_RS09190 0.38 -0.7 2,043,651 - ABZR86_RS09190 0.38 -0.0 2,043,653 + ABZR86_RS09190 0.38 -0.1 2,043,654 - ABZR86_RS09190 0.39 +0.2 2,043,714 + ABZR86_RS09190 0.53 +0.5 2,043,726 - ABZR86_RS09190 0.55 +0.3 2,043,807 - ABZR86_RS09190 0.74 +1.1 2,043,923 + +0.4 2,043,924 - +0.7 2,044,318 + +0.0 2,044,318 + +0.3 2,044,460 - ABZR86_RS09195 0.13 +0.4
Or see this region's nucleotide sequence