Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS08890

Experiment: L-Proline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS08880 and ABZR86_RS08885 are separated by 7 nucleotidesABZR86_RS08885 and ABZR86_RS08890 are separated by 34 nucleotidesABZR86_RS08890 and ABZR86_RS08895 are separated by 16 nucleotidesABZR86_RS08895 and ABZR86_RS08900 are separated by 62 nucleotides ABZR86_RS08880: ABZR86_RS08880 - asparagine--tRNA ligase, at 1,982,606 to 1,984,006 _RS08880 ABZR86_RS08885: ABZR86_RS08885 - MalM family protein, at 1,984,014 to 1,984,892 _RS08885 ABZR86_RS08890: ABZR86_RS08890 - hypothetical protein, at 1,984,927 to 1,985,247 _RS08890 ABZR86_RS08895: ABZR86_RS08895 - SDR family oxidoreductase, at 1,985,264 to 1,986,055 _RS08895 ABZR86_RS08900: ABZR86_RS08900 - aldehyde dehydrogenase, at 1,986,118 to 1,987,569 _RS08900 Position (kb) 1984 1985 1986Strain fitness (log2 ratio) -1 0 1 2at 1984.191 kb on + strand, within ABZR86_RS08885at 1984.191 kb on + strand, within ABZR86_RS08885at 1984.191 kb on + strand, within ABZR86_RS08885at 1984.191 kb on + strand, within ABZR86_RS08885at 1984.192 kb on - strand, within ABZR86_RS08885at 1984.206 kb on + strand, within ABZR86_RS08885at 1984.290 kb on + strand, within ABZR86_RS08885at 1984.290 kb on + strand, within ABZR86_RS08885at 1984.291 kb on - strand, within ABZR86_RS08885at 1984.291 kb on - strand, within ABZR86_RS08885at 1984.291 kb on - strand, within ABZR86_RS08885at 1984.291 kb on - strand, within ABZR86_RS08885at 1984.383 kb on + strand, within ABZR86_RS08885at 1984.383 kb on + strand, within ABZR86_RS08885at 1984.383 kb on + strand, within ABZR86_RS08885at 1984.383 kb on + strand, within ABZR86_RS08885at 1984.384 kb on - strand, within ABZR86_RS08885at 1984.384 kb on - strand, within ABZR86_RS08885at 1984.384 kb on - strand, within ABZR86_RS08885at 1984.384 kb on - strand, within ABZR86_RS08885at 1984.384 kb on - strand, within ABZR86_RS08885at 1984.542 kb on + strand, within ABZR86_RS08885at 1984.542 kb on + strand, within ABZR86_RS08885at 1984.542 kb on + strand, within ABZR86_RS08885at 1984.543 kb on - strand, within ABZR86_RS08885at 1984.543 kb on - strand, within ABZR86_RS08885at 1984.543 kb on - strand, within ABZR86_RS08885at 1984.543 kb on - strand, within ABZR86_RS08885at 1984.575 kb on + strand, within ABZR86_RS08885at 1984.576 kb on - strand, within ABZR86_RS08885at 1984.576 kb on - strand, within ABZR86_RS08885at 1984.576 kb on - strand, within ABZR86_RS08885at 1984.576 kb on - strand, within ABZR86_RS08885at 1984.576 kb on - strand, within ABZR86_RS08885at 1984.576 kb on - strand, within ABZR86_RS08885at 1984.832 kb on + strandat 1984.833 kb on - strandat 1984.932 kb on + strandat 1984.932 kb on + strandat 1984.932 kb on + strandat 1984.932 kb on + strandat 1984.932 kb on + strandat 1984.932 kb on + strandat 1984.932 kb on + strandat 1984.932 kb on + strandat 1984.933 kb on - strandat 1984.939 kb on + strandat 1984.939 kb on + strandat 1984.939 kb on + strandat 1984.940 kb on - strandat 1984.940 kb on - strandat 1984.940 kb on - strandat 1984.940 kb on - strandat 1984.940 kb on - strandat 1984.940 kb on - strandat 1984.940 kb on - strandat 1985.177 kb on - strand, within ABZR86_RS08890at 1985.227 kb on + strandat 1985.227 kb on + strandat 1985.227 kb on + strandat 1985.228 kb on - strandat 1985.228 kb on - strandat 1985.422 kb on + strand, within ABZR86_RS08895at 1985.422 kb on + strand, within ABZR86_RS08895at 1985.422 kb on + strand, within ABZR86_RS08895at 1985.423 kb on - strand, within ABZR86_RS08895at 1985.423 kb on - strand, within ABZR86_RS08895at 1985.423 kb on - strand, within ABZR86_RS08895at 1985.423 kb on - strand, within ABZR86_RS08895at 1985.828 kb on + strand, within ABZR86_RS08895at 1985.999 kb on + strandat 1985.999 kb on + strandat 1986.000 kb on - strandat 1986.000 kb on - strandat 1986.105 kb on + strandat 1986.106 kb on - strandat 1986.106 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (C)
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1,984,191 + ABZR86_RS08885 0.20 -0.5
1,984,191 + ABZR86_RS08885 0.20 -0.4
1,984,191 + ABZR86_RS08885 0.20 +0.7
1,984,191 + ABZR86_RS08885 0.20 -0.7
1,984,192 - ABZR86_RS08885 0.20 +0.1
1,984,206 + ABZR86_RS08885 0.22 +0.7
1,984,290 + ABZR86_RS08885 0.31 +0.0
1,984,290 + ABZR86_RS08885 0.31 -1.4
1,984,291 - ABZR86_RS08885 0.32 +0.1
1,984,291 - ABZR86_RS08885 0.32 +0.3
1,984,291 - ABZR86_RS08885 0.32 +0.5
1,984,291 - ABZR86_RS08885 0.32 -1.7
1,984,383 + ABZR86_RS08885 0.42 +0.6
1,984,383 + ABZR86_RS08885 0.42 -0.0
1,984,383 + ABZR86_RS08885 0.42 +0.0
1,984,383 + ABZR86_RS08885 0.42 +0.4
1,984,384 - ABZR86_RS08885 0.42 -0.1
1,984,384 - ABZR86_RS08885 0.42 -0.3
1,984,384 - ABZR86_RS08885 0.42 -0.0
1,984,384 - ABZR86_RS08885 0.42 -0.4
1,984,384 - ABZR86_RS08885 0.42 -0.8
1,984,542 + ABZR86_RS08885 0.60 +0.4
1,984,542 + ABZR86_RS08885 0.60 -0.1
1,984,542 + ABZR86_RS08885 0.60 +0.0
1,984,543 - ABZR86_RS08885 0.60 +0.4
1,984,543 - ABZR86_RS08885 0.60 +0.4
1,984,543 - ABZR86_RS08885 0.60 +0.1
1,984,543 - ABZR86_RS08885 0.60 -0.7
1,984,575 + ABZR86_RS08885 0.64 -0.1
1,984,576 - ABZR86_RS08885 0.64 -0.1
1,984,576 - ABZR86_RS08885 0.64 -0.2
1,984,576 - ABZR86_RS08885 0.64 +0.7
1,984,576 - ABZR86_RS08885 0.64 +0.1
1,984,576 - ABZR86_RS08885 0.64 -1.7
1,984,576 - ABZR86_RS08885 0.64 +0.2
1,984,832 + -0.3
1,984,833 - +1.1
1,984,932 + -0.4
1,984,932 + -0.0
1,984,932 + -0.7
1,984,932 + -0.5
1,984,932 + +0.1
1,984,932 + +0.5
1,984,932 + +0.6
1,984,932 + -0.6
1,984,933 - -0.5
1,984,939 + -0.2
1,984,939 + +0.4
1,984,939 + +1.0
1,984,940 - +0.1
1,984,940 - -0.1
1,984,940 - -0.2
1,984,940 - -0.0
1,984,940 - -1.2
1,984,940 - +0.3
1,984,940 - -0.0
1,985,177 - ABZR86_RS08890 0.78 +1.5
1,985,227 + -0.2
1,985,227 + +0.5
1,985,227 + -1.1
1,985,228 - +0.4
1,985,228 - +0.7
1,985,422 + ABZR86_RS08895 0.20 +1.9
1,985,422 + ABZR86_RS08895 0.20 -1.0
1,985,422 + ABZR86_RS08895 0.20 -1.1
1,985,423 - ABZR86_RS08895 0.20 -0.1
1,985,423 - ABZR86_RS08895 0.20 +1.5
1,985,423 - ABZR86_RS08895 0.20 -0.3
1,985,423 - ABZR86_RS08895 0.20 -0.1
1,985,828 + ABZR86_RS08895 0.71 +0.1
1,985,999 + +0.9
1,985,999 + -0.5
1,986,000 - -0.9
1,986,000 - -0.4
1,986,105 + -0.0
1,986,106 - +0.1
1,986,106 - -0.1

Or see this region's nucleotide sequence