Experiment: L-Proline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS08455 and ABZR86_RS08460 are separated by 4 nucleotides ABZR86_RS08460 and ABZR86_RS08465 are separated by 57 nucleotides ABZR86_RS08465 and ABZR86_RS08470 are separated by 423 nucleotides
ABZR86_RS08455: ABZR86_RS08455 - C39 family peptidase, at 1,887,838 to 1,888,524
_RS08455
ABZR86_RS08460: ABZR86_RS08460 - hypothetical protein, at 1,888,529 to 1,888,921
_RS08460
ABZR86_RS08465: ABZR86_RS08465 - hypothetical protein, at 1,888,979 to 1,889,908
_RS08465
ABZR86_RS08470: ABZR86_RS08470 - hypothetical protein, at 1,890,332 to 1,891,348
_RS08470
Position (kb) 1888
1889
1890 Strain fitness (log2 ratio) -1
0
1
2 at 1888.063 kb on + strand, within ABZR86_RS08455 at 1888.107 kb on - strand, within ABZR86_RS08455 at 1888.208 kb on + strand, within ABZR86_RS08455 at 1888.271 kb on + strand, within ABZR86_RS08455 at 1888.271 kb on + strand, within ABZR86_RS08455 at 1888.272 kb on - strand, within ABZR86_RS08455 at 1888.272 kb on - strand, within ABZR86_RS08455 at 1888.313 kb on + strand, within ABZR86_RS08455 at 1888.314 kb on - strand, within ABZR86_RS08455 at 1888.314 kb on - strand, within ABZR86_RS08455 at 1888.314 kb on - strand, within ABZR86_RS08455 at 1888.319 kb on + strand, within ABZR86_RS08455 at 1888.319 kb on + strand, within ABZR86_RS08455 at 1888.364 kb on + strand, within ABZR86_RS08455 at 1888.364 kb on + strand, within ABZR86_RS08455 at 1888.531 kb on - strand at 1888.650 kb on + strand, within ABZR86_RS08460 at 1888.691 kb on - strand, within ABZR86_RS08460 at 1888.836 kb on - strand, within ABZR86_RS08460 at 1888.836 kb on - strand, within ABZR86_RS08460 at 1889.581 kb on + strand, within ABZR86_RS08465 at 1889.581 kb on + strand, within ABZR86_RS08465 at 1889.582 kb on - strand, within ABZR86_RS08465 at 1890.200 kb on + strand at 1890.221 kb on + strand at 1890.222 kb on - strand at 1890.222 kb on - strand at 1890.336 kb on + strand at 1890.375 kb on + strand at 1890.454 kb on + strand, within ABZR86_RS08470 at 1890.457 kb on - strand, within ABZR86_RS08470 at 1890.564 kb on + strand, within ABZR86_RS08470 at 1890.714 kb on + strand, within ABZR86_RS08470 at 1890.715 kb on - strand, within ABZR86_RS08470 at 1890.715 kb on - strand, within ABZR86_RS08470 at 1890.843 kb on + strand, within ABZR86_RS08470
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (C) remove 1,888,063 + ABZR86_RS08455 0.33 -0.5 1,888,107 - ABZR86_RS08455 0.39 +0.9 1,888,208 + ABZR86_RS08455 0.54 +0.1 1,888,271 + ABZR86_RS08455 0.63 +0.9 1,888,271 + ABZR86_RS08455 0.63 -0.1 1,888,272 - ABZR86_RS08455 0.63 +0.6 1,888,272 - ABZR86_RS08455 0.63 +0.7 1,888,313 + ABZR86_RS08455 0.69 +1.9 1,888,314 - ABZR86_RS08455 0.69 +0.6 1,888,314 - ABZR86_RS08455 0.69 +0.2 1,888,314 - ABZR86_RS08455 0.69 -0.1 1,888,319 + ABZR86_RS08455 0.70 +0.1 1,888,319 + ABZR86_RS08455 0.70 -0.0 1,888,364 + ABZR86_RS08455 0.77 -1.3 1,888,364 + ABZR86_RS08455 0.77 +0.5 1,888,531 - -1.1 1,888,650 + ABZR86_RS08460 0.31 -0.0 1,888,691 - ABZR86_RS08460 0.41 +1.1 1,888,836 - ABZR86_RS08460 0.78 +0.0 1,888,836 - ABZR86_RS08460 0.78 -0.2 1,889,581 + ABZR86_RS08465 0.65 +1.2 1,889,581 + ABZR86_RS08465 0.65 +0.3 1,889,582 - ABZR86_RS08465 0.65 +0.1 1,890,200 + -0.8 1,890,221 + -0.4 1,890,222 - -0.2 1,890,222 - +1.1 1,890,336 + -1.2 1,890,375 + -0.4 1,890,454 + ABZR86_RS08470 0.12 +0.7 1,890,457 - ABZR86_RS08470 0.12 -0.1 1,890,564 + ABZR86_RS08470 0.23 +0.8 1,890,714 + ABZR86_RS08470 0.38 +0.3 1,890,715 - ABZR86_RS08470 0.38 +0.7 1,890,715 - ABZR86_RS08470 0.38 +0.1 1,890,843 + ABZR86_RS08470 0.50 +0.1
Or see this region's nucleotide sequence