Experiment: L-Proline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS04025 and ABZR86_RS04030 are separated by 852 nucleotides ABZR86_RS04030 and ABZR86_RS04035 are separated by 80 nucleotides
ABZR86_RS04025: ABZR86_RS04025 - hypothetical protein, at 886,301 to 886,795
_RS04025
ABZR86_RS04030: ABZR86_RS04030 - SDR family oxidoreductase, at 887,648 to 888,430
_RS04030
ABZR86_RS04035: ABZR86_RS04035 - LysR substrate-binding domain-containing protein, at 888,511 to 889,425
_RS04035
Position (kb) 887
888
889 Strain fitness (log2 ratio) -1
0
1
2 at 886.718 kb on + strand, within ABZR86_RS04025 at 886.719 kb on - strand, within ABZR86_RS04025 at 886.719 kb on - strand, within ABZR86_RS04025 at 886.794 kb on - strand at 886.794 kb on - strand at 886.963 kb on + strand at 887.060 kb on + strand at 887.060 kb on + strand at 887.061 kb on - strand at 887.061 kb on - strand at 887.105 kb on + strand at 887.105 kb on + strand at 887.106 kb on - strand at 887.144 kb on + strand at 887.145 kb on - strand at 887.150 kb on + strand at 887.150 kb on + strand at 887.150 kb on + strand at 887.151 kb on - strand at 887.151 kb on - strand at 887.151 kb on - strand at 887.151 kb on - strand at 887.209 kb on - strand at 887.209 kb on - strand at 887.432 kb on - strand at 887.432 kb on - strand at 887.502 kb on + strand at 887.502 kb on + strand at 887.503 kb on - strand at 887.611 kb on + strand at 887.612 kb on - strand at 887.612 kb on - strand at 887.892 kb on + strand, within ABZR86_RS04030 at 887.892 kb on + strand, within ABZR86_RS04030 at 887.892 kb on + strand, within ABZR86_RS04030 at 887.893 kb on - strand, within ABZR86_RS04030 at 887.987 kb on + strand, within ABZR86_RS04030 at 887.987 kb on + strand, within ABZR86_RS04030 at 887.987 kb on + strand, within ABZR86_RS04030 at 887.987 kb on + strand, within ABZR86_RS04030 at 887.988 kb on - strand, within ABZR86_RS04030 at 887.988 kb on - strand, within ABZR86_RS04030 at 888.105 kb on + strand, within ABZR86_RS04030 at 888.243 kb on - strand, within ABZR86_RS04030 at 888.243 kb on - strand, within ABZR86_RS04030 at 888.380 kb on + strand at 888.380 kb on + strand at 888.381 kb on - strand at 888.383 kb on - strand at 888.428 kb on + strand at 888.429 kb on - strand at 888.429 kb on - strand at 888.839 kb on + strand, within ABZR86_RS04035 at 888.856 kb on + strand, within ABZR86_RS04035 at 888.856 kb on + strand, within ABZR86_RS04035 at 888.856 kb on + strand, within ABZR86_RS04035 at 888.856 kb on + strand, within ABZR86_RS04035 at 888.856 kb on + strand, within ABZR86_RS04035 at 888.857 kb on - strand, within ABZR86_RS04035 at 888.857 kb on - strand, within ABZR86_RS04035 at 889.032 kb on + strand, within ABZR86_RS04035 at 889.232 kb on + strand, within ABZR86_RS04035 at 889.233 kb on - strand, within ABZR86_RS04035 at 889.233 kb on - strand, within ABZR86_RS04035 at 889.233 kb on - strand, within ABZR86_RS04035
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (C) remove 886,718 + ABZR86_RS04025 0.84 +0.2 886,719 - ABZR86_RS04025 0.84 +0.5 886,719 - ABZR86_RS04025 0.84 -0.5 886,794 - +0.5 886,794 - -0.2 886,963 + -0.4 887,060 + +2.3 887,060 + -1.6 887,061 - +0.7 887,061 - +0.9 887,105 + -0.0 887,105 + -1.5 887,106 - -0.3 887,144 + +1.0 887,145 - +0.0 887,150 + -1.2 887,150 + +1.0 887,150 + -0.4 887,151 - +0.4 887,151 - +0.1 887,151 - +0.0 887,151 - +0.1 887,209 - +0.7 887,209 - +0.3 887,432 - -1.2 887,432 - +0.9 887,502 + -0.9 887,502 + -0.4 887,503 - -1.3 887,611 + +0.6 887,612 - -0.3 887,612 - -0.9 887,892 + ABZR86_RS04030 0.31 +0.1 887,892 + ABZR86_RS04030 0.31 +0.6 887,892 + ABZR86_RS04030 0.31 +0.7 887,893 - ABZR86_RS04030 0.31 -0.7 887,987 + ABZR86_RS04030 0.43 +0.5 887,987 + ABZR86_RS04030 0.43 -0.0 887,987 + ABZR86_RS04030 0.43 -0.3 887,987 + ABZR86_RS04030 0.43 -0.1 887,988 - ABZR86_RS04030 0.43 +0.3 887,988 - ABZR86_RS04030 0.43 -0.9 888,105 + ABZR86_RS04030 0.58 +0.5 888,243 - ABZR86_RS04030 0.76 -0.6 888,243 - ABZR86_RS04030 0.76 +0.8 888,380 + +0.3 888,380 + +0.2 888,381 - +0.2 888,383 - -0.3 888,428 + +0.1 888,429 - -0.4 888,429 - +0.2 888,839 + ABZR86_RS04035 0.36 +1.0 888,856 + ABZR86_RS04035 0.38 -0.1 888,856 + ABZR86_RS04035 0.38 +0.9 888,856 + ABZR86_RS04035 0.38 +0.9 888,856 + ABZR86_RS04035 0.38 +0.6 888,856 + ABZR86_RS04035 0.38 +0.3 888,857 - ABZR86_RS04035 0.38 +0.6 888,857 - ABZR86_RS04035 0.38 -0.1 889,032 + ABZR86_RS04035 0.57 +1.1 889,232 + ABZR86_RS04035 0.79 +0.6 889,233 - ABZR86_RS04035 0.79 -0.4 889,233 - ABZR86_RS04035 0.79 +0.2 889,233 - ABZR86_RS04035 0.79 +0.1
Or see this region's nucleotide sequence