Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS00260

Experiment: L-Proline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS00255 and ABZR86_RS00260 are separated by 135 nucleotidesABZR86_RS00260 and ABZR86_RS00265 are separated by 142 nucleotides ABZR86_RS00255: ABZR86_RS00255 - LLM class flavin-dependent oxidoreductase, at 45,124 to 46,122 _RS00255 ABZR86_RS00260: ABZR86_RS00260 - DUF72 domain-containing protein, at 46,258 to 47,088 _RS00260 ABZR86_RS00265: ABZR86_RS00265 - PD40 domain-containing protein, at 47,231 to 48,214 _RS00265 Position (kb) 46 47 48Strain fitness (log2 ratio) -2 -1 0 1 2at 45.309 kb on + strand, within ABZR86_RS00255at 45.493 kb on + strand, within ABZR86_RS00255at 45.494 kb on - strand, within ABZR86_RS00255at 45.541 kb on + strand, within ABZR86_RS00255at 45.541 kb on + strand, within ABZR86_RS00255at 45.668 kb on - strand, within ABZR86_RS00255at 45.722 kb on - strand, within ABZR86_RS00255at 45.908 kb on - strand, within ABZR86_RS00255at 46.075 kb on + strandat 46.075 kb on + strandat 46.076 kb on - strandat 46.219 kb on + strandat 46.220 kb on - strandat 46.220 kb on - strandat 46.220 kb on - strandat 46.220 kb on - strandat 46.332 kb on - strandat 46.499 kb on + strand, within ABZR86_RS00260at 46.500 kb on - strand, within ABZR86_RS00260at 46.552 kb on - strand, within ABZR86_RS00260at 46.553 kb on + strand, within ABZR86_RS00260at 46.554 kb on - strand, within ABZR86_RS00260at 46.592 kb on + strand, within ABZR86_RS00260at 46.592 kb on + strand, within ABZR86_RS00260at 46.592 kb on + strand, within ABZR86_RS00260at 46.592 kb on + strand, within ABZR86_RS00260at 46.592 kb on + strand, within ABZR86_RS00260at 46.593 kb on - strand, within ABZR86_RS00260at 46.593 kb on - strand, within ABZR86_RS00260at 46.593 kb on - strand, within ABZR86_RS00260at 46.593 kb on - strand, within ABZR86_RS00260at 46.593 kb on - strand, within ABZR86_RS00260at 46.830 kb on - strand, within ABZR86_RS00260at 46.889 kb on + strand, within ABZR86_RS00260at 46.916 kb on + strand, within ABZR86_RS00260at 46.916 kb on + strand, within ABZR86_RS00260at 46.916 kb on + strand, within ABZR86_RS00260at 46.917 kb on - strand, within ABZR86_RS00260at 46.917 kb on - strand, within ABZR86_RS00260at 46.917 kb on - strand, within ABZR86_RS00260at 46.958 kb on + strand, within ABZR86_RS00260at 46.959 kb on - strand, within ABZR86_RS00260at 47.018 kb on + strandat 47.019 kb on - strandat 47.712 kb on - strand, within ABZR86_RS00265at 47.712 kb on - strand, within ABZR86_RS00265at 47.810 kb on + strand, within ABZR86_RS00265at 47.810 kb on + strand, within ABZR86_RS00265at 47.939 kb on + strand, within ABZR86_RS00265at 47.939 kb on + strand, within ABZR86_RS00265at 47.940 kb on - strand, within ABZR86_RS00265at 47.940 kb on - strand, within ABZR86_RS00265at 48.051 kb on - strand, within ABZR86_RS00265at 48.051 kb on - strand, within ABZR86_RS00265at 48.051 kb on - strand, within ABZR86_RS00265at 48.051 kb on - strand, within ABZR86_RS00265at 48.084 kb on - strand, within ABZR86_RS00265

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (C)
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45,309 + ABZR86_RS00255 0.19 +0.8
45,493 + ABZR86_RS00255 0.37 -0.4
45,494 - ABZR86_RS00255 0.37 +0.2
45,541 + ABZR86_RS00255 0.42 -0.1
45,541 + ABZR86_RS00255 0.42 -2.7
45,668 - ABZR86_RS00255 0.54 -0.6
45,722 - ABZR86_RS00255 0.60 +0.0
45,908 - ABZR86_RS00255 0.78 +1.0
46,075 + +0.0
46,075 + -0.2
46,076 - -0.4
46,219 + +2.1
46,220 - -2.0
46,220 - +0.7
46,220 - -0.3
46,220 - +0.4
46,332 - -0.2
46,499 + ABZR86_RS00260 0.29 +0.3
46,500 - ABZR86_RS00260 0.29 +0.3
46,552 - ABZR86_RS00260 0.35 -0.2
46,553 + ABZR86_RS00260 0.35 -0.8
46,554 - ABZR86_RS00260 0.36 +1.1
46,592 + ABZR86_RS00260 0.40 +0.6
46,592 + ABZR86_RS00260 0.40 +0.6
46,592 + ABZR86_RS00260 0.40 -0.5
46,592 + ABZR86_RS00260 0.40 +0.6
46,592 + ABZR86_RS00260 0.40 -0.3
46,593 - ABZR86_RS00260 0.40 +0.3
46,593 - ABZR86_RS00260 0.40 +0.2
46,593 - ABZR86_RS00260 0.40 +1.2
46,593 - ABZR86_RS00260 0.40 +0.3
46,593 - ABZR86_RS00260 0.40 +0.6
46,830 - ABZR86_RS00260 0.69 -2.1
46,889 + ABZR86_RS00260 0.76 +1.1
46,916 + ABZR86_RS00260 0.79 +2.1
46,916 + ABZR86_RS00260 0.79 +0.7
46,916 + ABZR86_RS00260 0.79 -0.3
46,917 - ABZR86_RS00260 0.79 +0.6
46,917 - ABZR86_RS00260 0.79 -0.4
46,917 - ABZR86_RS00260 0.79 +1.8
46,958 + ABZR86_RS00260 0.84 +0.4
46,959 - ABZR86_RS00260 0.84 +1.1
47,018 + +0.3
47,019 - +0.1
47,712 - ABZR86_RS00265 0.49 -1.5
47,712 - ABZR86_RS00265 0.49 +0.1
47,810 + ABZR86_RS00265 0.59 -0.3
47,810 + ABZR86_RS00265 0.59 -0.9
47,939 + ABZR86_RS00265 0.72 -0.5
47,939 + ABZR86_RS00265 0.72 -0.8
47,940 - ABZR86_RS00265 0.72 -0.2
47,940 - ABZR86_RS00265 0.72 -0.3
48,051 - ABZR86_RS00265 0.83 -0.4
48,051 - ABZR86_RS00265 0.83 +0.8
48,051 - ABZR86_RS00265 0.83 -0.5
48,051 - ABZR86_RS00265 0.83 +0.5
48,084 - ABZR86_RS00265 0.87 -0.2

Or see this region's nucleotide sequence