Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS00220

Experiment: L-Proline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS00210 and ABZR86_RS00215 are separated by 124 nucleotidesABZR86_RS00215 and ABZR86_RS00220 are separated by 188 nucleotidesABZR86_RS00220 and ABZR86_RS00225 are separated by 314 nucleotides ABZR86_RS00210: ABZR86_RS00210 - VOC family protein, at 37,814 to 38,308 _RS00210 ABZR86_RS00215: ABZR86_RS00215 - biopolymer transporter ExbD, at 38,433 to 38,825 _RS00215 ABZR86_RS00220: ABZR86_RS00220 - DUF3014 domain-containing protein, at 39,014 to 39,889 _RS00220 ABZR86_RS00225: ABZR86_RS00225 - multidrug effflux MFS transporter, at 40,204 to 41,412 _RS00225 Position (kb) 39 40Strain fitness (log2 ratio) -2 -1 0 1 2at 38.231 kb on + strand, within ABZR86_RS00210at 38.231 kb on + strand, within ABZR86_RS00210at 38.231 kb on + strand, within ABZR86_RS00210at 38.231 kb on + strand, within ABZR86_RS00210at 38.231 kb on + strand, within ABZR86_RS00210at 38.232 kb on - strand, within ABZR86_RS00210at 38.232 kb on - strand, within ABZR86_RS00210at 38.232 kb on - strand, within ABZR86_RS00210at 38.232 kb on - strand, within ABZR86_RS00210at 38.235 kb on + strand, within ABZR86_RS00210at 38.235 kb on + strand, within ABZR86_RS00210at 38.235 kb on + strand, within ABZR86_RS00210at 38.235 kb on + strand, within ABZR86_RS00210at 38.236 kb on - strand, within ABZR86_RS00210at 38.236 kb on - strand, within ABZR86_RS00210at 38.236 kb on - strand, within ABZR86_RS00210at 38.236 kb on - strand, within ABZR86_RS00210at 38.435 kb on - strandat 38.504 kb on - strand, within ABZR86_RS00215at 38.905 kb on - strandat 39.092 kb on + strandat 39.092 kb on + strandat 39.092 kb on + strandat 39.092 kb on + strandat 39.092 kb on + strandat 39.092 kb on + strandat 39.093 kb on - strandat 39.093 kb on - strandat 39.093 kb on - strandat 39.093 kb on - strandat 39.096 kb on + strandat 39.097 kb on - strandat 39.097 kb on - strandat 39.097 kb on - strandat 39.488 kb on + strand, within ABZR86_RS00220at 39.488 kb on + strand, within ABZR86_RS00220at 39.488 kb on + strand, within ABZR86_RS00220at 39.488 kb on + strand, within ABZR86_RS00220at 39.488 kb on + strand, within ABZR86_RS00220at 39.489 kb on - strand, within ABZR86_RS00220at 39.536 kb on + strand, within ABZR86_RS00220at 39.537 kb on - strand, within ABZR86_RS00220at 39.545 kb on + strand, within ABZR86_RS00220at 39.546 kb on - strand, within ABZR86_RS00220at 39.548 kb on + strand, within ABZR86_RS00220at 39.549 kb on - strand, within ABZR86_RS00220at 39.569 kb on + strand, within ABZR86_RS00220at 39.570 kb on - strand, within ABZR86_RS00220at 39.682 kb on + strand, within ABZR86_RS00220at 39.682 kb on + strand, within ABZR86_RS00220at 39.686 kb on + strand, within ABZR86_RS00220at 39.686 kb on + strand, within ABZR86_RS00220at 39.686 kb on + strand, within ABZR86_RS00220at 39.686 kb on + strand, within ABZR86_RS00220at 39.686 kb on + strand, within ABZR86_RS00220at 39.686 kb on + strand, within ABZR86_RS00220at 39.686 kb on + strand, within ABZR86_RS00220at 39.686 kb on + strand, within ABZR86_RS00220at 39.686 kb on + strand, within ABZR86_RS00220at 39.687 kb on - strand, within ABZR86_RS00220at 39.687 kb on - strand, within ABZR86_RS00220at 39.687 kb on - strand, within ABZR86_RS00220at 39.689 kb on + strand, within ABZR86_RS00220at 39.690 kb on - strand, within ABZR86_RS00220at 40.025 kb on + strandat 40.210 kb on - strandat 40.279 kb on + strandat 40.279 kb on + strandat 40.279 kb on + strandat 40.279 kb on + strandat 40.280 kb on - strandat 40.280 kb on - strandat 40.280 kb on - strandat 40.280 kb on - strandat 40.280 kb on - strandat 40.280 kb on - strandat 40.329 kb on + strand, within ABZR86_RS00225at 40.429 kb on + strand, within ABZR86_RS00225at 40.429 kb on + strand, within ABZR86_RS00225at 40.430 kb on - strand, within ABZR86_RS00225at 40.576 kb on - strand, within ABZR86_RS00225at 40.719 kb on - strand, within ABZR86_RS00225at 40.719 kb on - strand, within ABZR86_RS00225at 40.719 kb on - strand, within ABZR86_RS00225at 40.838 kb on - strand, within ABZR86_RS00225at 40.838 kb on - strand, within ABZR86_RS00225at 40.838 kb on - strand, within ABZR86_RS00225at 40.888 kb on + strand, within ABZR86_RS00225at 40.889 kb on - strand, within ABZR86_RS00225

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (C)
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38,231 + ABZR86_RS00210 0.84 -1.3
38,231 + ABZR86_RS00210 0.84 -0.0
38,231 + ABZR86_RS00210 0.84 -1.1
38,231 + ABZR86_RS00210 0.84 -1.0
38,231 + ABZR86_RS00210 0.84 -0.4
38,232 - ABZR86_RS00210 0.84 -0.7
38,232 - ABZR86_RS00210 0.84 +1.0
38,232 - ABZR86_RS00210 0.84 -0.3
38,232 - ABZR86_RS00210 0.84 -0.2
38,235 + ABZR86_RS00210 0.85 -0.2
38,235 + ABZR86_RS00210 0.85 +0.2
38,235 + ABZR86_RS00210 0.85 -2.5
38,235 + ABZR86_RS00210 0.85 +0.3
38,236 - ABZR86_RS00210 0.85 -0.6
38,236 - ABZR86_RS00210 0.85 +0.4
38,236 - ABZR86_RS00210 0.85 -0.5
38,236 - ABZR86_RS00210 0.85 -0.6
38,435 - +0.3
38,504 - ABZR86_RS00215 0.18 +1.4
38,905 - +0.5
39,092 + -0.5
39,092 + -0.5
39,092 + +1.5
39,092 + +0.3
39,092 + -0.9
39,092 + +0.1
39,093 - -0.6
39,093 - +0.3
39,093 - +0.6
39,093 - -0.0
39,096 + -0.5
39,097 - +0.3
39,097 - -0.1
39,097 - -1.2
39,488 + ABZR86_RS00220 0.54 -0.5
39,488 + ABZR86_RS00220 0.54 +0.2
39,488 + ABZR86_RS00220 0.54 +1.7
39,488 + ABZR86_RS00220 0.54 +2.4
39,488 + ABZR86_RS00220 0.54 +0.0
39,489 - ABZR86_RS00220 0.54 -0.2
39,536 + ABZR86_RS00220 0.60 -2.5
39,537 - ABZR86_RS00220 0.60 -0.3
39,545 + ABZR86_RS00220 0.61 +0.8
39,546 - ABZR86_RS00220 0.61 -0.5
39,548 + ABZR86_RS00220 0.61 -0.1
39,549 - ABZR86_RS00220 0.61 -0.3
39,569 + ABZR86_RS00220 0.63 +0.2
39,570 - ABZR86_RS00220 0.63 -1.2
39,682 + ABZR86_RS00220 0.76 -0.2
39,682 + ABZR86_RS00220 0.76 -0.1
39,686 + ABZR86_RS00220 0.77 +0.1
39,686 + ABZR86_RS00220 0.77 +0.1
39,686 + ABZR86_RS00220 0.77 -0.2
39,686 + ABZR86_RS00220 0.77 -0.1
39,686 + ABZR86_RS00220 0.77 +0.1
39,686 + ABZR86_RS00220 0.77 -0.1
39,686 + ABZR86_RS00220 0.77 -0.3
39,686 + ABZR86_RS00220 0.77 +0.0
39,686 + ABZR86_RS00220 0.77 -0.2
39,687 - ABZR86_RS00220 0.77 -0.7
39,687 - ABZR86_RS00220 0.77 -0.6
39,687 - ABZR86_RS00220 0.77 -0.2
39,689 + ABZR86_RS00220 0.77 -0.7
39,690 - ABZR86_RS00220 0.77 -0.1
40,025 + +0.0
40,210 - -0.2
40,279 + +0.3
40,279 + +0.3
40,279 + -0.3
40,279 + +0.7
40,280 - +0.4
40,280 - +0.1
40,280 - +0.1
40,280 - -0.4
40,280 - +1.0
40,280 - -0.4
40,329 + ABZR86_RS00225 0.10 -0.2
40,429 + ABZR86_RS00225 0.19 +0.1
40,429 + ABZR86_RS00225 0.19 -0.3
40,430 - ABZR86_RS00225 0.19 -0.9
40,576 - ABZR86_RS00225 0.31 -0.3
40,719 - ABZR86_RS00225 0.43 +0.2
40,719 - ABZR86_RS00225 0.43 -0.0
40,719 - ABZR86_RS00225 0.43 +0.3
40,838 - ABZR86_RS00225 0.52 -0.0
40,838 - ABZR86_RS00225 0.52 -0.4
40,838 - ABZR86_RS00225 0.52 -0.4
40,888 + ABZR86_RS00225 0.57 +0.3
40,889 - ABZR86_RS00225 0.57 +0.6

Or see this region's nucleotide sequence