Experiment: MoYLS4 with Tetracycline 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_3040 and DvMF_3041 overlap by 4 nucleotides DvMF_3041 and DvMF_3042 are separated by 104 nucleotides DvMF_3042 and DvMF_3043 are separated by 94 nucleotides
DvMF_3040: DvMF_3040 - coenzyme A binding protein (RefSeq), at 3,837,889 to 3,838,311
_3040
DvMF_3041: DvMF_3041 - protein of unknown function UPF0153 (RefSeq), at 3,838,308 to 3,838,835
_3041
DvMF_3042: DvMF_3042 - heat shock protein DnaJ domain protein (RefSeq), at 3,838,940 to 3,839,908
_3042
DvMF_3043: DvMF_3043 - protein of unknown function DUF6 transmembrane (RefSeq), at 3,840,003 to 3,840,974
_3043
Position (kb)
3838
3839
3840 Strain fitness (log2 ratio)
-1
0
1 at 3837.943 kb on - strand at 3838.586 kb on + strand, within DvMF_3041 at 3838.594 kb on - strand, within DvMF_3041 at 3839.067 kb on - strand, within DvMF_3042 at 3839.307 kb on - strand, within DvMF_3042 at 3839.601 kb on + strand, within DvMF_3042 at 3839.609 kb on - strand, within DvMF_3042 at 3839.691 kb on - strand, within DvMF_3042 at 3839.765 kb on - strand, within DvMF_3042 at 3840.090 kb on + strand at 3840.129 kb on + strand, within DvMF_3043 at 3840.129 kb on + strand, within DvMF_3043 at 3840.137 kb on - strand, within DvMF_3043 at 3840.147 kb on - strand, within DvMF_3043 at 3840.172 kb on - strand, within DvMF_3043 at 3840.436 kb on - strand, within DvMF_3043 at 3840.673 kb on + strand, within DvMF_3043 at 3840.698 kb on - strand, within DvMF_3043
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Tetracycline 0.0005 mg/ml remove 3,837,943 - +0.3 3,838,586 + DvMF_3041 0.53 -1.0 3,838,594 - DvMF_3041 0.54 -0.1 3,839,067 - DvMF_3042 0.13 -0.5 3,839,307 - DvMF_3042 0.38 +0.0 3,839,601 + DvMF_3042 0.68 -0.3 3,839,609 - DvMF_3042 0.69 -0.9 3,839,691 - DvMF_3042 0.78 +1.1 3,839,765 - DvMF_3042 0.85 -0.3 3,840,090 + -0.3 3,840,129 + DvMF_3043 0.13 -0.8 3,840,129 + DvMF_3043 0.13 +1.0 3,840,137 - DvMF_3043 0.14 -0.6 3,840,147 - DvMF_3043 0.15 -0.4 3,840,172 - DvMF_3043 0.17 -0.9 3,840,436 - DvMF_3043 0.45 -1.2 3,840,673 + DvMF_3043 0.69 -0.5 3,840,698 - DvMF_3043 0.72 -0.6
Or see this region's nucleotide sequence