Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2533

Experiment: MoYLS4 with Tetracycline 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2532 and DvMF_2533 are separated by 323 nucleotidesDvMF_2533 and DvMF_2534 are separated by 7 nucleotidesDvMF_2534 and DvMF_2535 are separated by 113 nucleotides DvMF_2532: DvMF_2532 - cytochrome c class III (RefSeq), at 3,194,419 to 3,196,350 _2532 DvMF_2533: DvMF_2533 - formate dehydrogenase, alpha subunit (RefSeq), at 3,196,674 to 3,199,706 _2533 DvMF_2534: DvMF_2534 - formate dehydrogenase beta subunit (RefSeq), at 3,199,714 to 3,200,466 _2534 DvMF_2535: DvMF_2535 - Methyltransferase type 11 (RefSeq), at 3,200,580 to 3,201,257 _2535 Position (kb) 3196 3197 3198 3199 3200Strain fitness (log2 ratio) -1 0 1at 3196.009 kb on - strand, within DvMF_2532at 3196.035 kb on + strand, within DvMF_2532at 3196.152 kb on - strand, within DvMF_2532at 3196.296 kb on + strandat 3196.361 kb on - strandat 3196.445 kb on - strandat 3196.761 kb on - strandat 3196.761 kb on - strandat 3196.821 kb on - strandat 3196.853 kb on + strandat 3197.160 kb on - strand, within DvMF_2533at 3197.193 kb on + strand, within DvMF_2533at 3197.392 kb on + strand, within DvMF_2533at 3197.418 kb on - strand, within DvMF_2533at 3197.645 kb on + strand, within DvMF_2533at 3197.713 kb on + strand, within DvMF_2533at 3197.753 kb on + strand, within DvMF_2533at 3197.881 kb on + strand, within DvMF_2533at 3197.900 kb on - strand, within DvMF_2533at 3198.073 kb on - strand, within DvMF_2533at 3198.214 kb on - strand, within DvMF_2533at 3198.224 kb on - strand, within DvMF_2533at 3198.396 kb on + strand, within DvMF_2533at 3198.500 kb on - strand, within DvMF_2533at 3198.635 kb on + strand, within DvMF_2533at 3198.635 kb on + strand, within DvMF_2533at 3198.643 kb on - strand, within DvMF_2533at 3198.806 kb on - strand, within DvMF_2533at 3198.886 kb on - strand, within DvMF_2533at 3198.913 kb on + strand, within DvMF_2533at 3199.001 kb on + strand, within DvMF_2533at 3199.011 kb on + strand, within DvMF_2533at 3199.220 kb on - strand, within DvMF_2533at 3199.248 kb on + strand, within DvMF_2533at 3199.248 kb on + strand, within DvMF_2533at 3199.249 kb on - strand, within DvMF_2533at 3199.256 kb on - strand, within DvMF_2533at 3199.256 kb on - strand, within DvMF_2533at 3199.268 kb on + strand, within DvMF_2533at 3199.302 kb on - strand, within DvMF_2533at 3199.419 kb on + strandat 3199.701 kb on + strandat 3199.755 kb on - strandat 3199.878 kb on + strand, within DvMF_2534at 3199.900 kb on + strand, within DvMF_2534at 3199.952 kb on + strand, within DvMF_2534at 3199.960 kb on - strand, within DvMF_2534at 3200.340 kb on - strand, within DvMF_2534at 3200.461 kb on + strandat 3200.461 kb on + strandat 3200.461 kb on + strandat 3200.469 kb on - strandat 3200.469 kb on - strandat 3200.498 kb on - strandat 3200.577 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Tetracycline 0.0005 mg/ml
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3,196,009 - DvMF_2532 0.82 -0.1
3,196,035 + DvMF_2532 0.84 +0.0
3,196,152 - DvMF_2532 0.90 -0.7
3,196,296 + -1.2
3,196,361 - -0.6
3,196,445 - -0.2
3,196,761 - -0.8
3,196,761 - -0.7
3,196,821 - -0.5
3,196,853 + -0.9
3,197,160 - DvMF_2533 0.16 -0.2
3,197,193 + DvMF_2533 0.17 -1.3
3,197,392 + DvMF_2533 0.24 -0.2
3,197,418 - DvMF_2533 0.25 +1.1
3,197,645 + DvMF_2533 0.32 -0.3
3,197,713 + DvMF_2533 0.34 -0.4
3,197,753 + DvMF_2533 0.36 -0.5
3,197,881 + DvMF_2533 0.40 -1.0
3,197,900 - DvMF_2533 0.40 -0.4
3,198,073 - DvMF_2533 0.46 -0.1
3,198,214 - DvMF_2533 0.51 -0.5
3,198,224 - DvMF_2533 0.51 -0.5
3,198,396 + DvMF_2533 0.57 -0.5
3,198,500 - DvMF_2533 0.60 -0.3
3,198,635 + DvMF_2533 0.65 -0.3
3,198,635 + DvMF_2533 0.65 -0.4
3,198,643 - DvMF_2533 0.65 +0.0
3,198,806 - DvMF_2533 0.70 -0.3
3,198,886 - DvMF_2533 0.73 -0.1
3,198,913 + DvMF_2533 0.74 -0.5
3,199,001 + DvMF_2533 0.77 -0.1
3,199,011 + DvMF_2533 0.77 -0.2
3,199,220 - DvMF_2533 0.84 -0.1
3,199,248 + DvMF_2533 0.85 -0.3
3,199,248 + DvMF_2533 0.85 -0.2
3,199,249 - DvMF_2533 0.85 -0.2
3,199,256 - DvMF_2533 0.85 -0.1
3,199,256 - DvMF_2533 0.85 -0.0
3,199,268 + DvMF_2533 0.86 -0.6
3,199,302 - DvMF_2533 0.87 -0.2
3,199,419 + -0.7
3,199,701 + +0.1
3,199,755 - -0.7
3,199,878 + DvMF_2534 0.22 -0.2
3,199,900 + DvMF_2534 0.25 -0.4
3,199,952 + DvMF_2534 0.32 +0.1
3,199,960 - DvMF_2534 0.33 -0.4
3,200,340 - DvMF_2534 0.83 -1.1
3,200,461 + -1.1
3,200,461 + -0.3
3,200,461 + +0.1
3,200,469 - -1.4
3,200,469 - -0.7
3,200,498 - -1.6
3,200,577 + -0.9

Or see this region's nucleotide sequence