Experiment: MoYLS4 with Tetracycline 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2442 and DvMF_R0068 are separated by 111 nucleotides DvMF_R0068 and DvMF_2443 are separated by 212 nucleotides DvMF_2443 and DvMF_2444 are separated by 6 nucleotides DvMF_2444 and DvMF_2445 are separated by 193 nucleotides
DvMF_2442: DvMF_2442 - Lytic transglycosylase catalytic (RefSeq), at 3,075,945 to 3,076,682
_2442
DvMF_R0068: DvMF_R0068 - tRNA-Phe (RefSeq), at 3,076,794 to 3,076,869
_R0068
DvMF_2443: DvMF_2443 - hypothetical protein (RefSeq), at 3,077,082 to 3,077,657
_2443
DvMF_2444: DvMF_2444 - short-chain dehydrogenase/reductase SDR (RefSeq), at 3,077,664 to 3,078,584
_2444
DvMF_2445: DvMF_2445 - HPP family protein (RefSeq), at 3,078,778 to 3,079,386
_2445
Position (kb)
3077
3078
3079 Strain fitness (log2 ratio)
-2
-1
0
1 at 3076.745 kb on - strand at 3076.747 kb on - strand at 3077.080 kb on + strand at 3077.136 kb on + strand at 3077.159 kb on - strand, within DvMF_2443 at 3077.238 kb on + strand, within DvMF_2443 at 3077.240 kb on - strand, within DvMF_2443 at 3077.252 kb on + strand, within DvMF_2443 at 3077.351 kb on - strand, within DvMF_2443 at 3077.496 kb on - strand, within DvMF_2443 at 3077.851 kb on + strand, within DvMF_2444 at 3077.870 kb on + strand, within DvMF_2444 at 3078.040 kb on + strand, within DvMF_2444 at 3078.145 kb on - strand, within DvMF_2444 at 3078.162 kb on + strand, within DvMF_2444 at 3078.384 kb on - strand, within DvMF_2444 at 3078.489 kb on + strand, within DvMF_2444 at 3078.664 kb on - strand at 3078.832 kb on + strand at 3079.005 kb on - strand, within DvMF_2445 at 3079.102 kb on - strand, within DvMF_2445 at 3079.318 kb on - strand, within DvMF_2445 at 3079.318 kb on - strand, within DvMF_2445 at 3079.323 kb on + strand, within DvMF_2445 at 3079.540 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Tetracycline 0.0005 mg/ml remove 3,076,745 - -0.6 3,076,747 - -1.0 3,077,080 + -0.1 3,077,136 + -0.5 3,077,159 - DvMF_2443 0.13 -0.4 3,077,238 + DvMF_2443 0.27 -0.1 3,077,240 - DvMF_2443 0.27 -0.3 3,077,252 + DvMF_2443 0.30 -0.2 3,077,351 - DvMF_2443 0.47 -0.6 3,077,496 - DvMF_2443 0.72 -0.8 3,077,851 + DvMF_2444 0.20 -0.3 3,077,870 + DvMF_2444 0.22 -0.3 3,078,040 + DvMF_2444 0.41 -0.3 3,078,145 - DvMF_2444 0.52 -0.1 3,078,162 + DvMF_2444 0.54 +0.7 3,078,384 - DvMF_2444 0.78 -1.3 3,078,489 + DvMF_2444 0.90 -2.3 3,078,664 - -0.3 3,078,832 + -0.1 3,079,005 - DvMF_2445 0.37 -0.5 3,079,102 - DvMF_2445 0.53 -0.8 3,079,318 - DvMF_2445 0.89 -0.7 3,079,318 - DvMF_2445 0.89 -0.5 3,079,323 + DvMF_2445 0.89 -0.7 3,079,540 + -0.6
Or see this region's nucleotide sequence