Experiment: MoYLS4 with Tetracycline 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2438 and DvMF_2439 overlap by 4 nucleotides DvMF_2439 and DvMF_2440 are separated by 29 nucleotides DvMF_2440 and DvMF_2441 are separated by 14 nucleotides DvMF_2441 and DvMF_2442 are separated by 466 nucleotides
DvMF_2438: DvMF_2438 - type III secretion system apparatus protein YscQ/HrcQ (RefSeq), at 3,072,806 to 3,074,035
_2438
DvMF_2439: DvMF_2439 - type III secretion system protein (RefSeq), at 3,074,032 to 3,074,682
_2439
DvMF_2440: DvMF_2440 - anti-sigma-factor antagonist (RefSeq), at 3,074,712 to 3,075,047
_2440
DvMF_2441: DvMF_2441 - putative anti-sigma regulatory factor, serine/threonine protein kinase (RefSeq), at 3,075,062 to 3,075,478
_2441
DvMF_2442: DvMF_2442 - Lytic transglycosylase catalytic (RefSeq), at 3,075,945 to 3,076,682
_2442
Position (kb)
3074
3075
3076 Strain fitness (log2 ratio)
-1
0
1 at 3073.806 kb on + strand, within DvMF_2438 at 3073.999 kb on + strand at 3074.089 kb on - strand at 3074.484 kb on + strand, within DvMF_2439 at 3074.492 kb on - strand, within DvMF_2439 at 3074.624 kb on + strand at 3074.720 kb on + strand at 3074.720 kb on + strand at 3074.730 kb on + strand at 3074.865 kb on - strand, within DvMF_2440 at 3074.865 kb on - strand, within DvMF_2440 at 3074.911 kb on - strand, within DvMF_2440 at 3074.926 kb on + strand, within DvMF_2440 at 3075.539 kb on + strand at 3075.763 kb on + strand at 3075.881 kb on - strand at 3075.881 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Tetracycline 0.0005 mg/ml remove 3,073,806 + DvMF_2438 0.81 -0.5 3,073,999 + +0.1 3,074,089 - -0.9 3,074,484 + DvMF_2439 0.69 +0.3 3,074,492 - DvMF_2439 0.71 -0.7 3,074,624 + -0.2 3,074,720 + -0.7 3,074,720 + -0.3 3,074,730 + +0.2 3,074,865 - DvMF_2440 0.46 -0.2 3,074,865 - DvMF_2440 0.46 +0.3 3,074,911 - DvMF_2440 0.59 -0.0 3,074,926 + DvMF_2440 0.64 +0.5 3,075,539 + -0.7 3,075,763 + -0.2 3,075,881 - -0.6 3,075,881 - -0.0
Or see this region's nucleotide sequence