Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1724

Experiment: MoYLS4 with Tetracycline 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1722 and DvMF_1723 are separated by 269 nucleotidesDvMF_1723 and DvMF_1724 are separated by 109 nucleotidesDvMF_1724 and DvMF_1725 are separated by 70 nucleotidesDvMF_1725 and DvMF_1726 are separated by 369 nucleotides DvMF_1722: DvMF_1722 - phosphoribosylamine--glycine ligase (RefSeq), at 2,106,509 to 2,107,786 _1722 DvMF_1723: DvMF_1723 - phosphoribosylaminoimidazole carboxylase, catalytic subunit (RefSeq), at 2,108,056 to 2,108,556 _1723 DvMF_1724: DvMF_1724 - no description, at 2,108,666 to 2,108,806 _1724 DvMF_1725: DvMF_1725 - protein of unknown function UPF0150 (RefSeq), at 2,108,877 to 2,109,284 _1725 DvMF_1726: DvMF_1726 - hypothetical protein (RefSeq), at 2,109,654 to 2,109,977 _1726 Position (kb) 2108 2109Strain fitness (log2 ratio) -3 -2 -1 0 1at 2107.867 kb on + strandat 2108.100 kb on - strandat 2108.102 kb on + strandat 2108.102 kb on + strandat 2108.102 kb on + strandat 2108.110 kb on - strand, within DvMF_1723at 2108.110 kb on - strand, within DvMF_1723at 2108.403 kb on - strand, within DvMF_1723at 2108.413 kb on - strand, within DvMF_1723at 2108.583 kb on + strandat 2108.583 kb on + strandat 2108.917 kb on + strandat 2108.958 kb on - strand, within DvMF_1725at 2108.989 kb on + strand, within DvMF_1725at 2109.034 kb on + strand, within DvMF_1725at 2109.390 kb on - strandat 2109.571 kb on + strandat 2109.571 kb on + strandat 2109.721 kb on + strand, within DvMF_1726

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Tetracycline 0.0005 mg/ml
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2,107,867 + -0.1
2,108,100 - -0.4
2,108,102 + -2.7
2,108,102 + -2.6
2,108,102 + -2.1
2,108,110 - DvMF_1723 0.11 -1.9
2,108,110 - DvMF_1723 0.11 -3.2
2,108,403 - DvMF_1723 0.69 -3.6
2,108,413 - DvMF_1723 0.71 -2.9
2,108,583 + -0.3
2,108,583 + +0.0
2,108,917 + -0.2
2,108,958 - DvMF_1725 0.20 -2.3
2,108,989 + DvMF_1725 0.27 -0.3
2,109,034 + DvMF_1725 0.38 -0.7
2,109,390 - -0.1
2,109,571 + +0.4
2,109,571 + +0.1
2,109,721 + DvMF_1726 0.21 +0.0

Or see this region's nucleotide sequence