Experiment: MoYLS4 with Tetracycline 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1722 and DvMF_1723 are separated by 269 nucleotides DvMF_1723 and DvMF_1724 are separated by 109 nucleotides DvMF_1724 and DvMF_1725 are separated by 70 nucleotides DvMF_1725 and DvMF_1726 are separated by 369 nucleotides
DvMF_1722: DvMF_1722 - phosphoribosylamine--glycine ligase (RefSeq), at 2,106,509 to 2,107,786
_1722
DvMF_1723: DvMF_1723 - phosphoribosylaminoimidazole carboxylase, catalytic subunit (RefSeq), at 2,108,056 to 2,108,556
_1723
DvMF_1724: DvMF_1724 - no description, at 2,108,666 to 2,108,806
_1724
DvMF_1725: DvMF_1725 - protein of unknown function UPF0150 (RefSeq), at 2,108,877 to 2,109,284
_1725
DvMF_1726: DvMF_1726 - hypothetical protein (RefSeq), at 2,109,654 to 2,109,977
_1726
Position (kb)
2108
2109 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2107.867 kb on + strand at 2108.100 kb on - strand at 2108.102 kb on + strand at 2108.102 kb on + strand at 2108.102 kb on + strand at 2108.110 kb on - strand, within DvMF_1723 at 2108.110 kb on - strand, within DvMF_1723 at 2108.403 kb on - strand, within DvMF_1723 at 2108.413 kb on - strand, within DvMF_1723 at 2108.583 kb on + strand at 2108.583 kb on + strand at 2108.917 kb on + strand at 2108.958 kb on - strand, within DvMF_1725 at 2108.989 kb on + strand, within DvMF_1725 at 2109.034 kb on + strand, within DvMF_1725 at 2109.390 kb on - strand at 2109.571 kb on + strand at 2109.571 kb on + strand at 2109.721 kb on + strand, within DvMF_1726
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Tetracycline 0.0005 mg/ml remove 2,107,867 + -0.1 2,108,100 - -0.4 2,108,102 + -2.7 2,108,102 + -2.6 2,108,102 + -2.1 2,108,110 - DvMF_1723 0.11 -1.9 2,108,110 - DvMF_1723 0.11 -3.2 2,108,403 - DvMF_1723 0.69 -3.6 2,108,413 - DvMF_1723 0.71 -2.9 2,108,583 + -0.3 2,108,583 + +0.0 2,108,917 + -0.2 2,108,958 - DvMF_1725 0.20 -2.3 2,108,989 + DvMF_1725 0.27 -0.3 2,109,034 + DvMF_1725 0.38 -0.7 2,109,390 - -0.1 2,109,571 + +0.4 2,109,571 + +0.1 2,109,721 + DvMF_1726 0.21 +0.0
Or see this region's nucleotide sequence