Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0585

Experiment: MoYLS4 with Tetracycline 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nthemC and DvMF_0585 are separated by 128 nucleotidesDvMF_0585 and DvMF_0586 are separated by 120 nucleotides DvMF_0584: hemC - porphobilinogen deaminase (RefSeq), at 691,772 to 692,725 hemC DvMF_0585: DvMF_0585 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 692,854 to 694,632 _0585 DvMF_0586: DvMF_0586 - transcriptional regulator, XRE family (RefSeq), at 694,753 to 695,766 _0586 Position (kb) 692 693 694 695Strain fitness (log2 ratio) -1 0 1at 692.794 kb on + strandat 693.485 kb on + strand, within DvMF_0585at 693.488 kb on - strand, within DvMF_0585at 693.493 kb on - strand, within DvMF_0585at 693.582 kb on + strand, within DvMF_0585at 693.614 kb on - strand, within DvMF_0585at 693.958 kb on - strand, within DvMF_0585at 694.479 kb on + strandat 694.764 kb on + strandat 694.772 kb on - strandat 695.191 kb on - strand, within DvMF_0586at 695.223 kb on - strand, within DvMF_0586at 695.287 kb on + strand, within DvMF_0586at 695.287 kb on + strand, within DvMF_0586at 695.305 kb on - strand, within DvMF_0586at 695.334 kb on + strand, within DvMF_0586at 695.352 kb on + strand, within DvMF_0586at 695.627 kb on + strand, within DvMF_0586

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Tetracycline 0.0005 mg/ml
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692,794 + +0.4
693,485 + DvMF_0585 0.35 -0.3
693,488 - DvMF_0585 0.36 -0.7
693,493 - DvMF_0585 0.36 -0.4
693,582 + DvMF_0585 0.41 -1.1
693,614 - DvMF_0585 0.43 -0.5
693,958 - DvMF_0585 0.62 -0.3
694,479 + -0.3
694,764 + +0.5
694,772 - -0.5
695,191 - DvMF_0586 0.43 -0.1
695,223 - DvMF_0586 0.46 -0.5
695,287 + DvMF_0586 0.53 +0.3
695,287 + DvMF_0586 0.53 -0.4
695,305 - DvMF_0586 0.54 -0.3
695,334 + DvMF_0586 0.57 -0.3
695,352 + DvMF_0586 0.59 -0.2
695,627 + DvMF_0586 0.86 -1.4

Or see this region's nucleotide sequence