Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0170

Experiment: MoYLS4 with Tetracycline 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_R0009 and DvMF_0169 are separated by 90 nucleotidesDvMF_0169 and DvMF_0170 are separated by 377 nucleotidesDvMF_0170 and DvMF_0171 are separated by 437 nucleotides DvMF_R0009: DvMF_R0009 - tRNA-Ser (RefSeq), at 185,121 to 185,214 _R0009 DvMF_0169: DvMF_0169 - CMP/dCMP deaminase zinc-binding (RefSeq), at 185,305 to 185,832 _0169 DvMF_0170: DvMF_0170 - hypothetical protein (RefSeq), at 186,210 to 186,866 _0170 DvMF_0171: DvMF_0171 - beta-lactamase domain protein (RefSeq), at 187,304 to 188,914 _0171 Position (kb) 186 187Strain fitness (log2 ratio) -1 0 1at 186.216 kb on - strandat 186.216 kb on - strandat 186.258 kb on + strandat 186.266 kb on - strandat 186.266 kb on - strandat 186.266 kb on - strandat 186.365 kb on + strand, within DvMF_0170at 186.367 kb on - strand, within DvMF_0170at 186.411 kb on + strand, within DvMF_0170at 186.851 kb on + strandat 187.271 kb on + strandat 187.604 kb on - strand, within DvMF_0171

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Tetracycline 0.0005 mg/ml
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186,216 - -0.5
186,216 - -0.0
186,258 + -1.2
186,266 - +0.0
186,266 - -0.6
186,266 - -0.2
186,365 + DvMF_0170 0.24 -0.4
186,367 - DvMF_0170 0.24 +1.0
186,411 + DvMF_0170 0.31 -0.0
186,851 + +0.3
187,271 + -0.4
187,604 - DvMF_0171 0.19 -0.2

Or see this region's nucleotide sequence