Strain Fitness in Shewanella sp. ANA-3 around Shewana3_4139

Experiment: L-Isoleucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_4138 and Shewana3_4139 are separated by 9 nucleotides Shewana3_4138: Shewana3_4138 - chromosome segregation DNA-binding protein (RefSeq), at 4,970,492 to 4,971,370 _4138 Shewana3_4139: Shewana3_4139 - chromosome segregation ATPase (RefSeq), at 4,971,380 to 4,972,168 _4139 Position (kb) 4971 4972 4973Strain fitness (log2 ratio) -2 -1 0 1at 4970.609 kb on - strand, within Shewana3_4138at 4970.617 kb on + strand, within Shewana3_4138at 4970.625 kb on - strand, within Shewana3_4138at 4970.720 kb on - strand, within Shewana3_4138at 4970.789 kb on + strand, within Shewana3_4138at 4970.797 kb on - strand, within Shewana3_4138at 4970.822 kb on - strand, within Shewana3_4138at 4970.828 kb on - strand, within Shewana3_4138at 4971.339 kb on - strandat 4971.352 kb on - strandat 4971.395 kb on - strandat 4971.518 kb on - strand, within Shewana3_4139at 4971.607 kb on + strand, within Shewana3_4139at 4971.691 kb on + strand, within Shewana3_4139at 4971.714 kb on - strand, within Shewana3_4139at 4972.028 kb on - strand, within Shewana3_4139at 4972.178 kb on - strandat 4972.178 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (C)
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4,970,609 - Shewana3_4138 0.13 -1.4
4,970,617 + Shewana3_4138 0.14 -1.9
4,970,625 - Shewana3_4138 0.15 -0.3
4,970,720 - Shewana3_4138 0.26 -0.7
4,970,789 + Shewana3_4138 0.34 -1.6
4,970,797 - Shewana3_4138 0.35 -0.4
4,970,822 - Shewana3_4138 0.38 -1.1
4,970,828 - Shewana3_4138 0.38 -0.7
4,971,339 - +0.5
4,971,352 - -0.5
4,971,395 - -0.3
4,971,518 - Shewana3_4139 0.17 +0.1
4,971,607 + Shewana3_4139 0.29 -2.1
4,971,691 + Shewana3_4139 0.39 -2.4
4,971,714 - Shewana3_4139 0.42 +0.4
4,972,028 - Shewana3_4139 0.82 -0.6
4,972,178 - +0.5
4,972,178 - -0.6

Or see this region's nucleotide sequence