Experiment: L-Isoleucine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4049 and Shewana3_4050 are separated by 276 nucleotides Shewana3_4050 and Shewana3_4051 are separated by 128 nucleotides
Shewana3_4049: Shewana3_4049 - glutathione S-transferase domain-containing protein (RefSeq), at 4,865,141 to 4,865,788
_4049
Shewana3_4050: Shewana3_4050 - hypothetical protein (RefSeq), at 4,866,065 to 4,866,595
_4050
Shewana3_4051: Shewana3_4051 - oligopeptidase A (RefSeq), at 4,866,724 to 4,868,763
_4051
Position (kb)
4866
4867 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4865.307 kb on - strand, within Shewana3_4049 at 4865.323 kb on - strand, within Shewana3_4049 at 4865.407 kb on + strand, within Shewana3_4049 at 4865.419 kb on + strand, within Shewana3_4049 at 4865.866 kb on - strand at 4865.866 kb on - strand at 4865.881 kb on - strand at 4865.881 kb on - strand at 4866.144 kb on + strand, within Shewana3_4050 at 4866.156 kb on + strand, within Shewana3_4050 at 4866.212 kb on + strand, within Shewana3_4050 at 4866.225 kb on - strand, within Shewana3_4050 at 4866.230 kb on - strand, within Shewana3_4050 at 4866.423 kb on - strand, within Shewana3_4050 at 4866.423 kb on - strand, within Shewana3_4050 at 4866.423 kb on - strand, within Shewana3_4050 at 4866.515 kb on - strand, within Shewana3_4050 at 4866.599 kb on - strand at 4866.625 kb on + strand at 4866.633 kb on - strand at 4866.721 kb on + strand at 4866.743 kb on - strand at 4866.805 kb on - strand at 4866.912 kb on + strand at 4867.196 kb on + strand, within Shewana3_4051 at 4867.286 kb on - strand, within Shewana3_4051
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (C) remove 4,865,307 - Shewana3_4049 0.26 -0.1 4,865,323 - Shewana3_4049 0.28 +0.6 4,865,407 + Shewana3_4049 0.41 +0.9 4,865,419 + Shewana3_4049 0.43 +1.0 4,865,866 - +0.2 4,865,866 - +0.3 4,865,881 - +1.0 4,865,881 - -1.6 4,866,144 + Shewana3_4050 0.15 +0.2 4,866,156 + Shewana3_4050 0.17 -1.7 4,866,212 + Shewana3_4050 0.28 +0.3 4,866,225 - Shewana3_4050 0.30 -3.0 4,866,230 - Shewana3_4050 0.31 -1.8 4,866,423 - Shewana3_4050 0.67 -1.3 4,866,423 - Shewana3_4050 0.67 -0.2 4,866,423 - Shewana3_4050 0.67 +0.1 4,866,515 - Shewana3_4050 0.85 +0.2 4,866,599 - +0.7 4,866,625 + +0.2 4,866,633 - +0.7 4,866,721 + +0.3 4,866,743 - -0.0 4,866,805 - -3.2 4,866,912 + -0.2 4,867,196 + Shewana3_4051 0.23 -0.4 4,867,286 - Shewana3_4051 0.28 +0.2
Or see this region's nucleotide sequence